Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 4.0e-60 234.6 119 100.0
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.4e-59 231.5 119 98.3
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 3.0e-23 112.1 94 60.6
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 3.9e-23 111.7 107 54.2
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 5.1e-23 111.3 93 61.3
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 5.1e-23 111.3 93 62.4
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 8.7e-23 110.5 94 59.6
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.5e-22 109.8 94 60.6
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.5e-22 109.0 93 54.8
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 5.7e-22 107.8 94 58.5
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.6e-21 106.3 100 57.0
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 3.1e-20 102.1 95 57.9
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 3.1e-20 102.1 93 57.0
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 5.3e-20 101.3 93 52.7
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.2e-19 100.1 93 57.0
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 1.2e-19 100.1 106 50.9
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 2.0e-19 99.4 106 47.2
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.0e-19 99.4 93 49.5
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 3.4e-19 98.6 93 52.7
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 4.5e-19 98.2 93 47.3
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 7.7e-19 97.4 90 51.1
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 7.7e-19 97.4 90 51.1
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.0e-18 97.1 93 55.9
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.0e-18 97.1 93 53.8
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.0e-18 97.1 93 52.7
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 2.2e-18 95.9 94 55.3
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 3.8e-18 95.1 94 57.4
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 6.5e-18 94.4 85 61.2
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 8.5e-18 94.0 93 51.6
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 8.5e-18 94.0 89 52.8
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.1e-17 93.6 92 52.2
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.4e-17 93.2 97 51.5
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.4e-17 93.2 91 52.7
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 1.4e-17 93.2 85 56.5
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 1.9e-17 92.8 93 50.5
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.9e-17 92.8 90 52.2
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.9e-17 92.8 75 64.0
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.5e-17 92.4 82 59.8
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.5e-17 92.4 97 50.5
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.5e-17 92.4 97 50.5
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 2.5e-17 92.4 89 53.9
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.5e-17 92.4 93 52.7
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.2e-17 92.0 97 50.5
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 3.2e-17 92.0 93 49.5
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 4.2e-17 91.7 93 50.5
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 7.2e-17 90.9 97 49.5
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 7.2e-17 90.9 93 53.8
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 7.2e-17 90.9 95 52.6
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 9.4e-17 90.5 97 50.5
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 9.4e-17 90.5 97 49.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 9.4e-17 90.5 81 54.3
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 9.4e-17 90.5 94 51.1
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 9.4e-17 90.5 93 49.5
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.2e-16 90.1 93 49.5
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.2e-16 90.1 92 51.1
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.2e-16 90.1 95 52.6
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.2e-16 90.1 93 51.6
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.2e-16 90.1 93 51.6
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.6e-16 89.7 93 50.5
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.6e-16 89.7 92 50.0
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.6e-16 89.7 97 50.5
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 2.1e-16 89.4 108 50.0
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.7e-16 89.0 98 50.0
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 3.6e-16 88.6 96 51.0
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 3.6e-16 88.6 93 49.5
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 4.6e-16 88.2 80 55.0
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 4.6e-16 88.2 93 52.7
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 4.6e-16 88.2 89 51.7
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 6.1e-16 87.8 93 49.5
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 6.1e-16 87.8 94 50.0
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 7.9e-16 87.4 97 48.5
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 7.9e-16 87.4 89 53.9
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 7.9e-16 87.4 104 50.0
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.0e-15 87.0 92 52.2
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.0e-15 87.0 81 54.3
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 1.0e-15 87.0 68 64.7
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.0e-15 87.0 91 49.5
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.0e-15 87.0 97 49.5
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.8e-15 86.3 93 51.6
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.8e-15 86.3 93 52.7
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 1.8e-15 86.3 106 44.3
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.8e-15 86.3 88 51.1
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.0e-15 85.5 97 48.5
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 3.0e-15 85.5 106 46.2
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 3.0e-15 85.5 97 48.5
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 3.0e-15 85.5 93 49.5
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 3.9e-15 85.1 80 53.8
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 3.9e-15 85.1 89 52.8
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.1e-15 84.7 90 52.2
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 6.7e-15 84.3 106 46.2
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.1e-14 83.6 103 46.6
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 1.5e-14 83.2 93 47.3
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-14 83.2 93 47.3
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.5e-14 83.2 89 48.3
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 4.3e-14 81.6 79 51.9
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 4.3e-14 81.6 89 49.4
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 5.7e-14 81.3 107 44.9
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 5.7e-14 81.3 85 52.9
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 5.7e-14 81.3 100 45.0
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 7.4e-14 80.9 94 50.0
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 9.7e-14 80.5 93 46.2
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 9.7e-14 80.5 74 50.0
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 9.7e-14 80.5 91 49.5
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.3e-13 80.1 97 45.4
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.3e-13 80.1 97 45.4
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.7e-13 79.7 93 49.5
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 2.8e-13 79.0 93 44.1
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 4.8e-13 78.2 90 47.8
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 4.8e-13 78.2 72 54.2
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 4.8e-13 78.2 93 45.2
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.8e-13 78.2 95 47.4
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 4.8e-13 78.2 90 47.8
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 6.3e-13 77.8 85 49.4
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.3e-13 77.8 95 46.3
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 8.2e-13 77.4 75 54.7
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 1.1e-12 77.0 88 46.6
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 1.1e-12 77.0 93 45.2
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 1.4e-12 76.6 80 47.5
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.8e-12 76.3 71 52.1
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 2.4e-12 75.9 75 49.3
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 2.4e-12 75.9 53 69.8
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 3.1e-12 75.5 85 43.5
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 3.1e-12 75.5 93 48.4
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.1e-12 75.5 91 47.3
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 5.3e-12 74.7 71 50.7
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 9.1e-12 73.9 84 45.2
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 2.0e-11 72.8 57 61.4
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 2.6e-11 72.4 88 46.6
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 3.4e-11 72.0 88 45.5
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 4.5e-11 71.6 92 43.5
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 4.5e-11 71.6 53 66.0
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 1.0e-10 70.5 72 52.8
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.9e-10 68.9 97 45.4
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 2.9e-10 68.9 92 41.3
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 3.8e-10 68.6 93 43.0
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 5.0e-10 68.2 61 57.4
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 5.0e-10 68.2 95 41.1
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.9e-09 66.2 92 43.5
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.5e-09 65.9 87 41.4
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 5.5e-09 64.7 77 46.8
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 7.2e-09 64.3 93 38.7
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 9.4e-09 63.9 78 50.0
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.6e-08 63.2 63 47.6
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 7.9e-08 60.8 72 48.6
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 2.3e-07 59.3 70 42.9
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 3.0e-07 58.9 92 41.3
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 5.1e-07 58.2 73 41.1
SalBow6G5095 Salvia bowleyana HOM05D004289 ORTHO05D005141 6.7e-07 57.8 89 36.0
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.8e-07 57.4 93 38.7
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.8e-07 57.4 93 38.7
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 8.8e-07 57.4 93 38.7
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.1e-06 57.0 109 35.8
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 1.5e-06 56.6 93 38.7
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 2.0e-06 56.2 107 35.5
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 2.6e-06 55.8 31 90.3
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.6e-06 55.8 72 45.8
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 3.3e-06 55.5 30 93.3
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.4e-06 55.1 79 44.3
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.4e-06 55.1 79 44.3
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 4.4e-06 55.1 109 35.8
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 5.7e-06 54.7 67 43.3
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 5.7e-06 54.7 92 41.3
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 5.7e-06 54.7 76 42.1
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 7.4e-06 54.3 81 38.3
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 7.4e-06 54.3 107 34.6
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.7e-06 53.9 77 46.8


User provided reference genes

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