Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.0e-220 767.7 365 100.0
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 5.6e-153 544.7 366 67.8
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 3.2e-148 528.9 366 66.9
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 5.0e-146 521.5 367 66.5
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 6.2e-144 514.6 368 65.2
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 9.8e-142 507.3 366 63.9
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 9.8e-142 507.3 364 62.4
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.2e-141 506.1 367 62.4
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 2.9e-141 505.8 365 62.5
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 2.9e-141 505.8 369 62.9
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 3.7e-141 505.4 357 63.6
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.9e-140 503.1 366 63.9
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.2e-140 502.3 367 61.9
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 5.4e-140 501.5 367 61.6
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 7.1e-140 501.1 287 79.4
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 2.1e-139 499.6 367 63.5
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 7.8e-139 497.7 359 62.1
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 5.1e-138 495.0 359 63.8
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 1.5e-137 493.4 351 63.2
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.6e-137 491.5 367 62.7
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.2e-136 490.3 365 61.4
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 5.2e-135 485.0 364 61.0
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.9e-135 484.2 367 61.3
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.9e-135 484.2 367 61.3
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 1.2e-134 483.8 358 62.6
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 1.2e-134 483.8 369 60.2
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.5e-134 483.4 362 62.2
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.5e-134 483.4 364 61.3
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 2.0e-134 483.0 366 60.9
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.6e-134 482.6 358 61.2
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 2.6e-134 482.6 367 61.6
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 4.4e-134 481.9 365 62.2
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.8e-134 481.5 367 61.0
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.3e-133 480.3 365 61.1
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.7e-133 479.9 361 60.9
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.7e-133 479.9 362 60.2
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 1.7e-133 479.9 364 59.6
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.7e-133 479.9 366 60.7
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 2.9e-133 479.2 366 60.7
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 2.9e-133 479.2 363 61.4
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 6.4e-133 478.0 361 60.9
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 6.4e-133 478.0 366 60.7
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 8.3e-133 477.6 369 58.8
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 8.3e-133 477.6 362 61.6
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.4e-132 476.9 366 60.7
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.4e-132 476.9 367 58.9
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 1.9e-132 476.5 369 60.4
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.9e-132 476.5 366 59.6
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 5.4e-132 474.9 361 59.6
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 9.2e-132 474.2 366 60.7
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 1.6e-131 473.4 335 63.3
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 2.7e-131 472.6 345 61.7
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 4.6e-131 471.9 360 59.7
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 7.8e-131 471.1 348 60.1
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.3e-130 470.3 364 59.1
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.3e-130 470.3 341 61.0
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 2.3e-130 469.5 364 59.6
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.1e-130 468.4 408 55.9
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 6.6e-130 468.0 371 59.3
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 8.6e-130 467.6 344 62.2
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-129 467.2 362 58.8
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.1e-129 467.2 363 59.8
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.5e-129 466.8 344 62.5
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.5e-129 466.8 341 60.4
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.9e-129 466.5 350 61.4
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 5.6e-129 464.9 364 59.3
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 7.3e-129 464.5 341 59.8
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 7.3e-129 464.5 363 59.5
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 9.6e-129 464.2 357 58.3
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 9.6e-129 464.2 363 59.0
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 9.6e-129 464.2 363 57.0
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.1e-128 463.0 347 60.8
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 2.8e-128 462.6 366 58.7
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 2.8e-128 462.6 364 59.1
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 8.1e-128 461.1 363 58.7
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.1e-127 460.7 361 59.0
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.8e-127 459.9 311 66.2
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 3.1e-127 459.1 354 60.2
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 3.1e-127 459.1 457 50.3
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 5.2e-127 458.4 358 58.4
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 8.9e-127 457.6 320 63.1
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 2.0e-126 456.4 326 62.0
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 4.4e-126 455.3 357 60.8
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 5.8e-126 454.9 347 59.1
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 5.8e-126 454.9 319 63.3
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 5.8e-126 454.9 319 63.0
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 7.6e-126 454.5 358 56.4
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 2.2e-125 453.0 362 56.9
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 3.8e-125 452.2 358 57.3
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 4.9e-125 451.8 359 58.5
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 8.4e-125 451.1 348 58.0
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 9.3e-124 447.6 365 55.9
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.6e-123 445.3 367 57.5
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 6.0e-123 444.9 451 50.3
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.0e-122 444.1 361 56.2
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.7e-122 443.4 361 56.0
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.7e-122 443.4 361 56.0
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.7e-122 443.4 361 56.0
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.6e-122 441.4 367 57.2
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 8.7e-122 441.0 361 55.4
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.1e-121 440.7 362 55.2
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 1.9e-121 439.9 361 55.4
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.9e-121 439.9 359 56.5
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.3e-120 437.2 358 55.3
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 4.8e-120 435.3 326 61.0
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 4.2e-116 422.2 364 55.2
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.7e-114 416.8 371 56.1
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 4.3e-113 412.1 315 61.9
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 2.6e-110 402.9 354 54.2
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.8e-106 390.2 361 53.5
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 2.3e-106 389.8 276 62.3
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 5.1e-106 388.7 276 62.0
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.3e-105 386.0 334 54.2
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 4.3e-105 385.6 276 61.6
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 5.1e-98 362.1 270 60.7
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 8.2e-96 354.8 268 60.1
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 6.9e-95 351.7 366 48.1
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 2.9e-93 346.3 290 55.2
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.1e-92 344.4 322 55.3
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.1e-87 327.8 363 46.8
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 6.9e-87 325.1 231 61.0
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 2.0e-86 323.6 363 48.2
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.0e-86 323.6 360 45.6
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.4e-84 317.4 232 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 3.6e-83 312.8 354 46.0
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 6.1e-83 312.0 248 58.1
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.0e-82 311.2 258 56.6
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 7.7e-78 295.0 236 56.8
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.0e-77 294.7 289 50.9
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.9e-77 293.1 208 63.9
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 3.3e-73 279.6 221 57.9
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 6.5e-69 265.4 194 61.9
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.7e-66 255.4 168 66.7
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 8.8e-66 255.0 214 57.9
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.4e-65 252.7 187 62.0
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.2e-52 209.9 155 62.6
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 2.6e-49 200.3 158 57.6
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 2.6e-49 200.3 246 42.7
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 5.2e-42 176.0 145 57.9
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 7.0e-39 165.6 229 40.6
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.7e-24 116.7 102 52.9
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 2.4e-23 114.0 107 46.7
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 4.1e-23 113.2 97 56.7
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 5.4e-23 112.8 102 50.0
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.0e-21 107.1 112 49.1
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.6e-11 74.7 142 30.3
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 3.5e-06 57.0 55 43.6


User provided reference genes

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