Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002575 Vanilla planifolia HOM05D003080 ORTHO05D037504 1.8e-31 138.7 72 100.0
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.8e-31 138.7 72 100.0
HPP92_002573 Vanilla planifolia HOM05D003080 ORTHO05D003601 1.4e-20 102.4 51 100.0
HPP92_005436 Vanilla planifolia HOM05D003080 ORTHO05D003601 3.0e-18 94.7 57 80.7
HPP92_005440 Vanilla planifolia HOM05D003080 ORTHO05D003601 3.0e-18 94.7 57 80.7
Aqoxy2G01477 Aquilegia oxysepala HOM05D003080 ORTHO05D003601 3.1e-15 84.7 51 84.3
CAN.G812.34 Capsicum annuum HOM05D003080 ORTHO05D003601 4.1e-15 84.3 68 66.2
ATR0829G217 Amborella trichopoda HOM05D003080 ORTHO05D003601 6.9e-15 83.6 48 81.2
PSO017G1687 Papaver somniferum HOM05D003080 ORTHO05D003601 6.9e-15 83.6 48 83.3
PSO675G5135 Papaver somniferum HOM05D003080 ORTHO05D003601 6.9e-15 83.6 48 83.3
TAR629G0895 Trochodendron aralioides HOM05D003080 ORTHO05D003601 6.9e-15 83.6 68 64.7
Duzib068G1377 Durio zibethinus HOM05D003080 ORTHO05D003601 2.0e-14 82.0 68 64.7
Peaxi162Scf00125g01116 Petunia axillaris HOM05D003080 ORTHO05D003601 2.6e-14 81.6 68 64.7
AagrBONN_evm.TU.Sc2ySwM_344.571 Anthoceros agrestis HOM05D003080 ORTHO05D000077 3.4e-14 81.3 65 64.6
CiPaw.12G069600 Carya illinoinensis HOM05D003080 ORTHO05D003601 3.4e-14 81.3 71 62.0
CiPaw.12G069700 Carya illinoinensis HOM05D003080 ORTHO05D003601 3.4e-14 81.3 71 62.0
Gohir.A03G000025 Gossypium hirsutum HOM05D003080 ORTHO05D003601 3.4e-14 81.3 68 63.2
Gohir.D03G176901 Gossypium hirsutum HOM05D003080 ORTHO05D003601 3.4e-14 81.3 68 63.2
Gorai.003G186200 Gossypium raimondii HOM05D003080 ORTHO05D003601 3.4e-14 81.3 68 63.2
Mapoly0083s0033 Marchantia polymorpha HOM05D003080 ORTHO05D003601 3.4e-14 81.3 48 77.1
GSVIVG01013003001 Vitis vinifera HOM05D003080 ORTHO05D003601 3.4e-14 81.3 65 67.7
Pp3c15_23390 Physcomitrium patens HOM05D003080 ORTHO05D003601 4.5e-14 80.9 68 64.7
QL12p000156 Quercus lobata HOM05D003080 ORTHO05D003601 4.5e-14 80.9 71 62.0
SalBow1G6542 Salvia bowleyana HOM05D003080 ORTHO05D037504 4.5e-14 80.9 51 74.5
SalBow1G7829 Salvia bowleyana HOM05D003080 ORTHO05D037504 4.5e-14 80.9 51 74.5
MD06G1024700 Malus domestica HOM05D003080 ORTHO05D003601 7.7e-14 80.1 68 64.7
MD16G1281300 Malus domestica HOM05D003080 ORTHO05D003601 7.7e-14 80.1 68 64.7
TAR375G0586 Trochodendron aralioides HOM05D003080 ORTHO05D003601 7.7e-14 80.1 68 63.2
Aa31LG9G7430 Aethionema arabicum HOM05D003080 ORTHO05D003601 1.0e-13 79.7 68 61.8
FvH4_5g23350 Fragaria vesca HOM05D003080 ORTHO05D003601 1.0e-13 79.7 68 63.2
FAN04G1945 Fragaria x ananassa HOM05D003080 ORTHO05D003601 1.0e-13 79.7 68 63.2
FAN08G2865 Fragaria x ananassa HOM05D003080 ORTHO05D003601 1.0e-13 79.7 68 63.2
FAN13G0052 Fragaria x ananassa HOM05D003080 ORTHO05D003601 1.0e-13 79.7 68 63.2
FAN18G1293 Fragaria x ananassa HOM05D003080 ORTHO05D003601 1.0e-13 79.7 68 63.2
FAN18G2386 Fragaria x ananassa HOM05D003080 ORTHO05D003601 1.0e-13 79.7 68 63.2
Phvul.004G155700 Phaseolus vulgaris HOM05D003080 ORTHO05D003601 1.0e-13 79.7 68 63.2
RcHm_v2.0_Chr7g0212291 Rosa chinensis HOM05D003080 ORTHO05D003601 1.0e-13 79.7 68 63.2
THA.LOC104798451 Tarenaya hassleriana HOM05D003080 ORTHO05D003601 1.0e-13 79.7 68 61.8
Aqoxy2G04028 Aquilegia oxysepala HOM05D003080 ORTHO05D003601 1.3e-13 79.3 45 82.2
Pp3c9_24880 Physcomitrium patens HOM05D003080 ORTHO05D003601 1.3e-13 79.3 68 63.2
Sabra03G0066700 Salix brachista HOM05D003080 ORTHO05D003601 1.3e-13 79.3 68 63.2
COL.COLO4_16915 Corchorus olitorius HOM05D003080 ORTHO05D003601 1.7e-13 79.0 68 61.8
Duzib205G1813 Durio zibethinus HOM05D003080 ORTHO05D003601 1.7e-13 79.0 68 61.8
Eucgr.E01309 Eucalyptus grandis HOM05D003080 ORTHO05D003601 1.7e-13 79.0 54 68.5
Gohir.D11G030700 Gossypium hirsutum HOM05D003080 ORTHO05D003601 1.7e-13 79.0 68 60.3
Gorai.007G033600 Gossypium raimondii HOM05D003080 ORTHO05D003601 1.7e-13 79.0 68 60.3
Phvul.002G134000 Phaseolus vulgaris HOM05D003080 ORTHO05D003601 1.7e-13 79.0 68 63.2
SGA_v2.0_scaffold111G31384 Striga asiatica HOM05D003080 ORTHO05D003601 1.7e-13 79.0 48 79.2
Atru.chr6.1549 Acer truncatum HOM05D003080 ORTHO05D003601 2.2e-13 78.6 68 63.2
BcaB04g18516 Brassica carinata HOM05D003080 ORTHO05D003601 2.2e-13 78.6 68 60.3
CARHR225910 Cardamine hirsuta HOM05D003080 ORTHO05D003601 2.2e-13 78.6 68 60.3
Thhalv10000920m.g Eutrema salsugineum HOM05D003080 ORTHO05D003601 2.2e-13 78.6 48 75.0
Nn1g01895 Nelumbo nucifera HOM05D003080 ORTHO05D003601 2.2e-13 78.6 68 61.8
THA.LOC104806178 Tarenaya hassleriana HOM05D003080 ORTHO05D003601 2.2e-13 78.6 68 60.3
VMungo0464G1943 Vigna mungo HOM05D003080 ORTHO05D003601 2.2e-13 78.6 68 61.8
AL7G35140 Arabidopsis lyrata HOM05D003080 ORTHO05D003601 2.9e-13 78.2 68 60.3
AT4G19006 Arabidopsis thaliana HOM05D003080 ORTHO05D003601 2.9e-13 78.2 68 60.3
CDE02G2942 Ceratophyllum demersum HOM05D003080 ORTHO05D003601 2.9e-13 78.2 68 60.3
Haze_08126 Corylus avellana HOM05D003080 ORTHO05D003601 2.9e-13 78.2 51 72.5
Lalb_Chr16g0380961 Lupinus albus HOM05D003080 ORTHO05D003601 2.9e-13 78.2 68 61.8
Nitab4.5_0009986g0010 Nicotiana tabacum HOM05D003080 ORTHO05D003601 2.9e-13 78.2 68 60.3
Psat2g140000 Pisum sativum HOM05D003080 ORTHO05D003601 2.9e-13 78.2 48 79.2
Potri.003G098400 Populus trichocarpa HOM05D003080 ORTHO05D003601 2.9e-13 78.2 48 77.1
Sed0013712 Sechium edule HOM05D003080 ORTHO05D003601 2.9e-13 78.2 68 61.8
ClCG10G001210 Citrullus lanatus HOM05D003080 ORTHO05D003601 3.8e-13 77.8 68 61.8
Duzib084G0141 Durio zibethinus HOM05D003080 ORTHO05D003601 3.8e-13 77.8 68 60.3
Lsat_1_v5_gn_3_21060 Lactuca sativa HOM05D003080 ORTHO05D003601 3.8e-13 77.8 68 61.8
Nn4g26616 Nelumbo nucifera HOM05D003080 ORTHO05D003601 3.8e-13 77.8 68 60.3
Solyc09g090720.3 Solanum lycopersicum HOM05D003080 ORTHO05D003601 3.8e-13 77.8 68 60.3
Sopen09g033660 Solanum pennellii HOM05D003080 ORTHO05D003601 3.8e-13 77.8 68 60.3
PGSC0003DMG400024449 Solanum tuberosum HOM05D003080 ORTHO05D003601 3.8e-13 77.8 68 60.3
SGA_v2.0_scaffold144G35861 Striga asiatica HOM05D003080 ORTHO05D003601 3.8e-13 77.8 48 77.1
Thecc.03G311900 Theobroma cacao HOM05D003080 ORTHO05D003601 3.8e-13 77.8 68 60.3
Aa31LG6G1710 Aethionema arabicum HOM05D003080 ORTHO05D003601 5.0e-13 77.4 54 66.7
BcaC01g00588 Brassica carinata HOM05D003080 ORTHO05D003601 5.0e-13 77.4 68 58.8
C03p81670 Brassica napus HOM05D003080 ORTHO05D003601 5.0e-13 77.4 68 58.8
BolC3t20437H Brassica oleracea HOM05D003080 ORTHO05D003601 5.0e-13 77.4 68 58.8
CDE11G0146 Ceratophyllum demersum HOM05D003080 ORTHO05D003601 5.0e-13 77.4 68 58.8
Gohir.D08G173700 Gossypium hirsutum HOM05D003080 ORTHO05D003601 5.0e-13 77.4 68 60.3
Hma1.2p1_1819F.1_g304080 Hydrangea macrophylla HOM05D003080 ORTHO05D003601 5.0e-13 77.4 49 75.5
MBI04_g20977_MAGBIO Magnolia biondii HOM05D003080 ORTHO05D003601 5.0e-13 77.4 68 60.3
Sed0008477 Sechium edule HOM05D003080 ORTHO05D003601 5.0e-13 77.4 68 63.2
Zm00001eb025130 Zea mays HOM05D003080 ORTHO05D003601 5.0e-13 77.4 66 59.1
Carub.0007s2215 Capsella rubella HOM05D003080 ORTHO05D003601 6.5e-13 77.0 68 58.8
Cpa.g.sc2151.1 Carica papaya HOM05D003080 ORTHO05D003601 6.5e-13 77.0 68 60.3
Ciclev10001468m.g Citrus clementina HOM05D003080 ORTHO05D003601 6.5e-13 77.0 68 61.8
Thhalv10025439m.g Eutrema salsugineum HOM05D003080 ORTHO05D003601 6.5e-13 77.0 68 58.8
Glyma.09G210000 Glycine max HOM05D003080 ORTHO05D003601 6.5e-13 77.0 68 60.3
HanXRQChr03g0082021 Helianthus annuus HOM05D003080 ORTHO05D003601 6.5e-13 77.0 68 60.3
Medtr5g027960 Medicago truncatula HOM05D003080 ORTHO05D003601 6.5e-13 77.0 68 60.3
arahy.Tifrunner.gnm1.ann1.M4FFXQ Arachis hypogaea HOM05D003080 ORTHO05D003601 8.5e-13 76.6 68 60.3
arahy.Tifrunner.gnm1.ann1.VHU77H Arachis hypogaea HOM05D003080 ORTHO05D003601 8.5e-13 76.6 68 60.3
A08p14090 Brassica napus HOM05D003080 ORTHO05D003601 8.5e-13 76.6 68 58.8
BraA08t33403Z Brassica rapa HOM05D003080 ORTHO05D003601 8.5e-13 76.6 68 58.8
CsaV3_3G001250 Cucumis sativus L. HOM05D003080 ORTHO05D003601 8.5e-13 76.6 68 60.3
Lj8C318G18 Lonicera japonica HOM05D003080 ORTHO05D003601 8.5e-13 76.6 48 75.0
Manes.15G192600 Manihot esculenta HOM05D003080 ORTHO05D003601 8.5e-13 76.6 48 77.1
Manes.17G014700 Manihot esculenta HOM05D003080 ORTHO05D003601 8.5e-13 76.6 48 77.1
Prupe.5G025900 Prunus persica HOM05D003080 ORTHO05D003601 8.5e-13 76.6 68 60.3
PGR042G1922 Punica granatum HOM05D003080 ORTHO05D003601 8.5e-13 76.6 54 68.5
TWI60G0391 Tripterygium wilfordii HOM05D003080 ORTHO05D003601 8.5e-13 76.6 68 60.3
TWI81G0619 Tripterygium wilfordii HOM05D003080 ORTHO05D003601 8.5e-13 76.6 48 75.0
Zm00001eb225010 Zea mays HOM05D003080 ORTHO05D003601 8.5e-13 76.6 68 57.4
EL10Ac5g11933 Beta vulgaris HOM05D003080 ORTHO05D003601 1.1e-12 76.3 68 58.8
CANSAT21G2083 Cannabis sativa HOM05D003080 ORTHO05D003601 1.1e-12 76.3 68 60.3
MELO3C013814.2 Cucumis melo HOM05D003080 ORTHO05D003601 1.1e-12 76.3 48 75.0
Dinv29020 Davidia involucrata HOM05D003080 ORTHO05D003601 1.1e-12 76.3 68 60.3
HanXRQChr06g0172911 Helianthus annuus HOM05D003080 ORTHO05D003601 1.1e-12 76.3 68 60.3
HanXRQChr13g0404831 Helianthus annuus HOM05D003080 ORTHO05D003601 1.1e-12 76.3 68 60.3
Hma1.2p1_1460F.1_g285000 Hydrangea macrophylla HOM05D003080 ORTHO05D003601 1.1e-12 76.3 48 75.0
Lsat_1_v5_gn_6_73301 Lactuca sativa HOM05D003080 ORTHO05D003601 1.1e-12 76.3 68 60.3
SalBow8G0471 Salvia bowleyana HOM05D003080 ORTHO05D003601 1.1e-12 76.3 68 60.3
unitig_0.g2212 Utricularia gibba HOM05D003080 ORTHO05D003601 1.1e-12 76.3 68 60.3
Aqoxy2G02748 Aquilegia oxysepala HOM05D003080 ORTHO05D003601 1.4e-12 75.9 64 60.9
AL8G13060 Arabidopsis lyrata HOM05D003080 ORTHO05D003601 1.4e-12 75.9 48 72.9
AT5G45620 Arabidopsis thaliana HOM05D003080 ORTHO05D003601 1.4e-12 75.9 48 72.9
Carub.0008s0240 Capsella rubella HOM05D003080 ORTHO05D003601 1.4e-12 75.9 48 72.9
Glyma.01G011100 Glycine max HOM05D003080 ORTHO05D003601 1.4e-12 75.9 68 60.3
Gohir.A08G152800 Gossypium hirsutum HOM05D003080 ORTHO05D003601 1.4e-12 75.9 48 72.9
Gorai.004G181400 Gossypium raimondii HOM05D003080 ORTHO05D003601 1.4e-12 75.9 68 58.8
AUR62027324 Chenopodium quinoa HOM05D003080 ORTHO05D003601 1.9e-12 75.5 65 61.5
Migut.E01326 Erythranthe guttata HOM05D003080 ORTHO05D003601 1.9e-12 75.5 68 58.8
Gohir.A11G028500 Gossypium hirsutum HOM05D003080 ORTHO05D003601 1.9e-12 75.5 68 58.8
Potri.001G135200 Populus trichocarpa HOM05D003080 ORTHO05D003601 1.9e-12 75.5 68 60.3
Hund11106 Selenicereus undatus HOM05D003080 ORTHO05D003601 1.9e-12 75.5 68 58.8
CSS0050250 Camellia sinensis var. sinensis HOM05D003080 ORTHO05D003601 2.5e-12 75.1 68 60.3
Ca_25159_v3 Cicer arietinum L. HOM05D003080 ORTHO05D003601 2.5e-12 75.1 68 58.8
Cc08_g03830 Coffea canephora HOM05D003080 ORTHO05D003601 2.5e-12 75.1 68 60.3
Dinv06912 Davidia involucrata HOM05D003080 ORTHO05D003601 2.5e-12 75.1 48 72.9
Sp2g10510 Schrenkiella parvula HOM05D003080 ORTHO05D003601 2.5e-12 75.1 48 70.8
MSTRG.13899 Avicennia marina HOM05D003080 ORTHO05D003601 3.2e-12 74.7 68 57.4
Lalb_Chr05g0215681 Lupinus albus HOM05D003080 ORTHO05D003601 3.2e-12 74.7 68 57.4
Oeu027878.2 Olea europaea HOM05D003080 ORTHO05D003601 3.2e-12 74.7 68 60.3
CARHR176400 Cardamine hirsuta HOM05D003080 ORTHO05D003601 4.2e-12 74.3 68 57.4
AUR62007408 Chenopodium quinoa HOM05D003080 ORTHO05D003601 4.2e-12 74.3 68 58.8
Lalb_Chr09g0325361 Lupinus albus HOM05D003080 ORTHO05D003601 4.2e-12 74.3 68 58.8
Actinidia14774 Actinidia chinensis HOM05D003080 ORTHO05D003601 5.5e-12 73.9 68 57.4
Actinidia18141 Actinidia chinensis HOM05D003080 ORTHO05D003601 5.5e-12 73.9 68 57.4
A06p46480 Brassica napus HOM05D003080 ORTHO05D003601 5.5e-12 73.9 68 57.4
BraA06t27521Z Brassica rapa HOM05D003080 ORTHO05D003601 5.5e-12 73.9 68 57.4
Oeu031075.3 Olea europaea HOM05D003080 ORTHO05D003601 5.5e-12 73.9 49 71.4
Hund14335 Selenicereus undatus HOM05D003080 ORTHO05D003601 5.5e-12 73.9 48 70.8
Sc01g0006010 Simmondsia chinensis HOM05D003080 ORTHO05D003601 5.5e-12 73.9 68 58.8
Actinidia29279 Actinidia chinensis HOM05D003080 ORTHO05D003601 7.2e-12 73.6 68 57.4
BcaC06g31533 Brassica carinata HOM05D003080 ORTHO05D003601 7.2e-12 73.6 59 59.3
CSS0021453 Camellia sinensis var. sinensis HOM05D003080 ORTHO05D003601 7.2e-12 73.6 68 58.8
Nitab4.5_0001769g0140 Nicotiana tabacum HOM05D003080 ORTHO05D003601 7.2e-12 73.6 68 57.4
vmacro14210 Vaccinium macrocarpon HOM05D003080 ORTHO05D003601 7.2e-12 73.6 49 69.4
Eucgr.D02637 Eucalyptus grandis HOM05D003080 ORTHO05D003601 9.4e-12 73.2 69 58.0
Lj7A123G21 Lonicera japonica HOM05D003080 ORTHO05D003601 9.4e-12 73.2 68 55.9
TPR.G19451 Trifolium pratense HOM05D003080 ORTHO05D003601 9.4e-12 73.2 68 58.8
BcaC06g34415 Brassica carinata HOM05D003080 ORTHO05D003601 1.2e-11 72.8 68 55.9
C07p28740 Brassica napus HOM05D003080 ORTHO05D003601 1.2e-11 72.8 68 55.9
BolC7t43412H Brassica oleracea HOM05D003080 ORTHO05D003601 1.2e-11 72.8 68 55.9
PGR031G1048 Punica granatum HOM05D003080 ORTHO05D003601 1.2e-11 72.8 54 68.5
DCAR_008205 Daucus carota HOM05D003080 ORTHO05D003601 1.6e-11 72.4 68 58.8
Nitab4.5_0001998g0060 Nicotiana tabacum HOM05D003080 ORTHO05D003601 1.6e-11 72.4 68 55.9
Nitab4.5_0002738g0030 Nicotiana tabacum HOM05D003080 ORTHO05D003601 1.6e-11 72.4 68 55.9
Lj2g0002525 Lotus japonicus HOM05D003080 ORTHO05D003601 2.7e-11 71.6 68 57.4
Nitab4.5_0000745g0020 Nicotiana tabacum HOM05D003080 ORTHO05D003601 2.7e-11 71.6 68 57.4
Rhsim07G0134200 Rhododendron simsii HOM05D003080 ORTHO05D003601 3.6e-11 71.2 68 54.4
Os03g0214600 Oryza sativa ssp. japonica HOM05D003080 ORTHO05D003601 4.6e-11 70.9 68 58.8
Peaxi162Scf00164g00215 Petunia axillaris HOM05D003080 ORTHO05D003601 4.6e-11 70.9 68 55.9
Os01g0511300 Oryza sativa ssp. japonica HOM05D003080 ORTHO05D003601 1.0e-10 69.7 68 55.9
THA.LOC104798508 Tarenaya hassleriana HOM05D003080 ORTHO05D003601 1.0e-10 69.7 68 51.5
DCAR_000654 Daucus carota HOM05D003080 ORTHO05D003601 1.8e-10 68.9 68 54.4
MSTRG.1792 Avicennia marina HOM05D003080 ORTHO05D003601 2.3e-10 68.6 67 55.2
ECA240G2349 Erigeron canadensis HOM05D003080 ORTHO05D003601 3.0e-10 68.2 47 63.8
Solyc05g053140.3 Solanum lycopersicum HOM05D003080 ORTHO05D003601 3.0e-10 68.2 68 55.9
Sopen05g031650 Solanum pennellii HOM05D003080 ORTHO05D003601 3.0e-10 68.2 68 55.9
PGSC0003DMG400027201 Solanum tuberosum HOM05D003080 ORTHO05D003601 3.0e-10 68.2 68 55.9
CAN.G305.29 Capsicum annuum HOM05D003080 ORTHO05D003601 3.9e-10 67.8 48 68.8
Rhsim11G0028300 Rhododendron simsii HOM05D003080 ORTHO05D003601 3.9e-10 67.8 68 52.9
vmacro00239 Vaccinium macrocarpon HOM05D003080 ORTHO05D003601 1.1e-09 66.2 68 51.5
DCAR_004589 Daucus carota HOM05D003080 ORTHO05D003601 2.0e-09 65.5 48 62.5
TPR.G12225 Trifolium pratense HOM05D003080 ORTHO05D003601 9.7e-09 63.2 65 52.3
Ah.07g201350 Amaranthus hybridus HOM05D003080 ORTHO05D003601 8.2e-08 60.1 67 47.8
Ah.12g055960 Amaranthus hybridus HOM05D003080 ORTHO05D003601 1.1e-07 59.7 47 57.4
SMO356G0440 Selaginella moellendorffii HOM05D003080 ORTHO05D003601 1.2e-06 56.2 41 63.4
CBR_g12752 Chara braunii HOM05D003080 ORTHO05D003601 2.6e-06 55.1 45 48.9


User provided reference genes

Program Settings