Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002564 Vanilla planifolia HOM05D003231 ORTHO05D428418 1.8e-226 788.9 397 100.0
HPP92_002548 Vanilla planifolia HOM05D003231 ORTHO05D003865 5.5e-21 106.3 96 66.7
Nn7g36616 Nelumbo nucifera HOM05D003231 ORTHO05D003865 1.6e-12 78.2 103 44.7
MELO3C003645.2 Cucumis melo HOM05D003231 ORTHO05D003865 1.0e-11 75.5 105 41.9
Sed0011155 Sechium edule HOM05D003231 ORTHO05D003865 1.0e-11 75.5 105 41.9
ClCG05G017420 Citrullus lanatus HOM05D003231 ORTHO05D003865 2.3e-11 74.3 105 40.0
Sed0022904 Sechium edule HOM05D003231 ORTHO05D003865 2.3e-11 74.3 105 40.0
CsaV3_3G046920 Cucumis sativus L. HOM05D003231 ORTHO05D003865 4.0e-11 73.6 105 41.0
MBI16_g23305_MAGBIO Magnolia biondii HOM05D003231 ORTHO05D003865 5.2e-11 73.2 103 42.7
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 6.7e-11 72.8 97 48.5
Aqoxy7G04165 Aquilegia oxysepala HOM05D003231 ORTHO05D003865 8.8e-11 72.4 103 42.7
MBI18_g03888_MAGBIO Magnolia biondii HOM05D003231 ORTHO05D003865 2.6e-10 70.9 88 47.7
TWI63G1568 Tripterygium wilfordii HOM05D003231 ORTHO05D003865 3.3e-10 70.5 95 44.2
CANSAT25G1032 Cannabis sativa HOM05D003231 ORTHO05D003865 5.7e-10 69.7 84 45.2
Dinv06253 Davidia involucrata HOM05D003231 ORTHO05D003865 5.7e-10 69.7 103 40.8
GSVIVG01022781001 Vitis vinifera HOM05D003231 ORTHO05D003865 5.7e-10 69.7 102 42.2
CiPaw.07G214900 Carya illinoinensis HOM05D003231 ORTHO05D003865 7.5e-10 69.3 103 41.7
Glyma.06G075600 Glycine max HOM05D003231 ORTHO05D003865 7.5e-10 69.3 103 40.8
Potri.006G281400 Populus trichocarpa HOM05D003231 ORTHO05D003865 7.5e-10 69.3 88 44.3
Rhsim04G0219000 Rhododendron simsii HOM05D003231 ORTHO05D003865 7.5e-10 69.3 95 43.2
Sabra06G0217300 Salix brachista HOM05D003231 ORTHO05D003865 7.5e-10 69.3 88 43.2
DCAR_019594 Daucus carota HOM05D003231 ORTHO05D003865 9.7e-10 68.9 103 40.8
TWI32G0035 Tripterygium wilfordii HOM05D003231 ORTHO05D003865 9.7e-10 68.9 95 44.2
VMungo0647G2491 Vigna mungo HOM05D003231 ORTHO05D003865 9.7e-10 68.9 103 39.8
Zm00001eb247840 Zea mays HOM05D003231 ORTHO05D003865 9.7e-10 68.9 96 41.7
Cfa013246 Carpinus fangiana HOM05D003231 ORTHO05D003865 1.3e-09 68.6 105 41.9
Potri.006G281200 Populus trichocarpa HOM05D003231 ORTHO05D003865 1.3e-09 68.6 88 43.2
vmacro07258 Vaccinium macrocarpon HOM05D003231 ORTHO05D003865 1.3e-09 68.6 91 42.9
Zm00001eb066590 Zea mays HOM05D003231 ORTHO05D003865 1.3e-09 68.6 99 41.4
Carub.0007s0944 Capsella rubella HOM05D003231 ORTHO05D003865 1.7e-09 68.2 88 40.9
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 1.7e-09 68.2 85 45.9
Gohir.A06G108000 Gossypium hirsutum HOM05D003231 ORTHO05D003865 1.7e-09 68.2 94 40.4
Gohir.D06G110100 Gossypium hirsutum HOM05D003231 ORTHO05D003865 1.7e-09 68.2 94 40.4
Gorai.010G125100 Gossypium raimondii HOM05D003231 ORTHO05D003865 1.7e-09 68.2 94 40.4
Aa31LG2G19240 Aethionema arabicum HOM05D003231 ORTHO05D003865 2.2e-09 67.8 103 38.8
CANSAT25G0033 Cannabis sativa HOM05D003231 ORTHO05D003865 2.2e-09 67.8 95 42.1
Eucgr.D01078 Eucalyptus grandis HOM05D003231 ORTHO05D003865 2.2e-09 67.8 103 41.7
Nn7g37407 Nelumbo nucifera HOM05D003231 ORTHO05D003865 2.2e-09 67.8 103 39.8
Os02g0631000 Oryza sativa ssp. japonica HOM05D003231 ORTHO05D003865 2.2e-09 67.8 96 40.6
Sp7g28960 Schrenkiella parvula HOM05D003231 ORTHO05D003865 2.2e-09 67.8 85 42.4
arahy.Tifrunner.gnm1.ann1.1UP6DU Arachis hypogaea HOM05D003231 ORTHO05D003865 2.8e-09 67.4 91 44.0
CSS0026000 Camellia sinensis var. sinensis HOM05D003231 ORTHO05D003865 2.8e-09 67.4 103 39.8
Haze_21690 Corylus avellana HOM05D003231 ORTHO05D003865 2.8e-09 67.4 105 40.0
CARHR238990 Cardamine hirsuta HOM05D003231 ORTHO05D003865 3.7e-09 67.0 88 39.8
Medtr1g010010 Medicago truncatula HOM05D003231 ORTHO05D003865 3.7e-09 67.0 103 37.9
Phvul.001G057800 Phaseolus vulgaris HOM05D003231 ORTHO05D003865 3.7e-09 67.0 103 38.8
Rhsim08G0224200 Rhododendron simsii HOM05D003231 ORTHO05D003865 3.7e-09 67.0 83 45.8
Sabra06G0217400 Salix brachista HOM05D003231 ORTHO05D003865 3.7e-09 67.0 92 41.3
Ciclev10011920m.g Citrus clementina HOM05D003231 ORTHO05D003865 4.8e-09 66.6 95 44.2
DCAR_021019 Daucus carota HOM05D003231 ORTHO05D003865 4.8e-09 66.6 95 43.2
Thhalv10025341m.g Eutrema salsugineum HOM05D003231 ORTHO05D003865 4.8e-09 66.6 85 41.2
Lj1g0002631 Lotus japonicus HOM05D003231 ORTHO05D003865 4.8e-09 66.6 103 38.8
Manes.16G138400 Manihot esculenta HOM05D003231 ORTHO05D003865 4.8e-09 66.6 105 39.0
Nitab4.5_0000299g0150 Nicotiana tabacum HOM05D003231 ORTHO05D003865 4.8e-09 66.6 91 42.9
PGSC0003DMG400024848 Solanum tuberosum HOM05D003231 ORTHO05D003865 4.8e-09 66.6 91 42.9
Sopen04g026770 Solanum pennellii HOM05D003231 ORTHO05D003865 6.3e-09 66.2 91 42.9
AL7G20980 Arabidopsis lyrata HOM05D003231 ORTHO05D003865 8.2e-09 65.9 88 38.6
AT4G31080 Arabidopsis thaliana HOM05D003231 ORTHO05D003865 8.2e-09 65.9 88 38.6
Cpa.g.sc148.16 Carica papaya HOM05D003231 ORTHO05D003865 8.2e-09 65.9 103 38.8
Glyma.11G175328 Glycine max HOM05D003231 ORTHO05D003865 8.2e-09 65.9 103 38.8
Glyma.17G201100 Glycine max HOM05D003231 ORTHO05D003865 8.2e-09 65.9 103 38.8
Gohir.A13G181800 Gossypium hirsutum HOM05D003231 ORTHO05D003865 8.2e-09 65.9 103 35.9
Thecc.09G002000 Theobroma cacao HOM05D003231 ORTHO05D003865 8.2e-09 65.9 85 43.5
CiPaw.08G017500 Carya illinoinensis HOM05D003231 ORTHO05D003865 1.1e-08 65.5 103 38.8
Gohir.D13G185500 Gossypium hirsutum HOM05D003231 ORTHO05D003865 1.1e-08 65.5 103 35.9
Gorai.013G211500 Gossypium raimondii HOM05D003231 ORTHO05D003865 1.1e-08 65.5 103 35.9
Actinidia23641 Actinidia chinensis HOM05D003231 ORTHO05D003865 1.4e-08 65.1 103 37.9
arahy.Tifrunner.gnm1.ann1.BPJ3T6 Arachis hypogaea HOM05D003231 ORTHO05D003865 1.4e-08 65.1 91 42.9
MSTRG.10658 Avicennia marina HOM05D003231 ORTHO05D003865 1.4e-08 65.1 103 40.8
FAN15G1275 Fragaria x ananassa HOM05D003231 ORTHO05D003865 1.4e-08 65.1 85 43.5
Sopen06g009630 Solanum pennellii HOM05D003231 ORTHO05D003865 1.4e-08 65.1 91 42.9
THA.LOC104803575 Tarenaya hassleriana HOM05D003231 ORTHO05D003865 1.4e-08 65.1 103 36.9
Atru.chr7.2716 Acer truncatum HOM05D003231 ORTHO05D003865 1.8e-08 64.7 95 42.1
CAN.G963.1 Capsicum annuum HOM05D003231 ORTHO05D003865 1.8e-08 64.7 91 40.7
Glyma.14G132600 Glycine max HOM05D003231 ORTHO05D003865 1.8e-08 64.7 103 37.9
Lalb_Chr11g0064081 Lupinus albus HOM05D003231 ORTHO05D003865 1.8e-08 64.7 104 40.4
Nitab4.5_0010241g0010 Nicotiana tabacum HOM05D003231 ORTHO05D003865 1.8e-08 64.7 91 41.8
Solyc04g064810.4 Solanum lycopersicum HOM05D003231 ORTHO05D003865 1.8e-08 64.7 91 41.8
Ciclev10011811m.g Citrus clementina HOM05D003231 ORTHO05D003865 2.4e-08 64.3 85 45.9
Glyma.04G074400 Glycine max HOM05D003231 ORTHO05D003865 2.4e-08 64.3 85 43.5
MD15G1110400 Malus domestica HOM05D003231 ORTHO05D003865 2.4e-08 64.3 105 35.2
RcHm_v2.0_Chr6g0312251 Rosa chinensis HOM05D003231 ORTHO05D003865 2.4e-08 64.3 85 42.4
SGA_v2.0_scaffold464G52005 Striga asiatica HOM05D003231 ORTHO05D003865 2.4e-08 64.3 95 42.1
ATR0693G374 Amborella trichopoda HOM05D003231 ORTHO05D003865 3.1e-08 63.9 95 42.1
SalBow6G3063 Salvia bowleyana HOM05D003231 ORTHO05D003865 3.1e-08 63.9 88 40.9
TAR362G1099 Trochodendron aralioides HOM05D003231 ORTHO05D003865 3.1e-08 63.9 103 37.9
CARHR117760 Cardamine hirsuta HOM05D003231 ORTHO05D003865 4.1e-08 63.5 87 43.7
Ca_12882_v3 Cicer arietinum L. HOM05D003231 ORTHO05D003865 4.1e-08 63.5 95 38.9
FvH4_2g30651 Fragaria vesca HOM05D003231 ORTHO05D003865 4.1e-08 63.5 85 43.5
FAN24G1616 Fragaria x ananassa HOM05D003231 ORTHO05D003865 4.1e-08 63.5 85 43.5
Manes.01G174800 Manihot esculenta HOM05D003231 ORTHO05D003865 4.1e-08 63.5 105 37.1
Manes.07G090400 Manihot esculenta HOM05D003231 ORTHO05D003865 4.1e-08 63.5 105 37.1
QL12p024649 Quercus lobata HOM05D003231 ORTHO05D003865 4.1e-08 63.5 91 39.6
TAR362G1253 Trochodendron aralioides HOM05D003231 ORTHO05D003865 4.1e-08 63.5 95 41.1
vmacro00794 Vaccinium macrocarpon HOM05D003231 ORTHO05D003865 4.1e-08 63.5 80 43.8
BcaB03g12675 Brassica carinata HOM05D003231 ORTHO05D003865 5.3e-08 63.2 85 40.0
Carub.0004s0366 Capsella rubella HOM05D003231 ORTHO05D003865 5.3e-08 63.2 87 43.7
Duzib150G0378 Durio zibethinus HOM05D003231 ORTHO05D003865 5.3e-08 63.2 103 35.9
Os04g0672900 Oryza sativa ssp. japonica HOM05D003231 ORTHO05D003865 5.3e-08 63.2 99 37.4
C03p88290 Brassica napus HOM05D003231 ORTHO05D003865 7.0e-08 62.8 92 38.0
CAN.G744.15 Capsicum annuum HOM05D003231 ORTHO05D003865 7.0e-08 62.8 91 40.7
Lalb_Chr23g0268911 Lupinus albus HOM05D003231 ORTHO05D003865 7.0e-08 62.8 103 36.9
Psat6g031880 Pisum sativum HOM05D003231 ORTHO05D003865 7.0e-08 62.8 103 36.9
AL4G14680 Arabidopsis lyrata HOM05D003231 ORTHO05D003865 9.1e-08 62.4 87 43.7
AT2G24330 Arabidopsis thaliana HOM05D003231 ORTHO05D003865 9.1e-08 62.4 87 43.7
BcaC01g01114 Brassica carinata HOM05D003231 ORTHO05D003865 9.1e-08 62.4 85 38.8
A08p18890 Brassica napus HOM05D003231 ORTHO05D003865 9.1e-08 62.4 85 38.8
BraA08t33850Z Brassica rapa HOM05D003231 ORTHO05D003865 9.1e-08 62.4 85 38.8
Duzib168G0939 Durio zibethinus HOM05D003231 ORTHO05D003865 1.2e-07 62.0 103 35.9
ECA236G1370 Erigeron canadensis HOM05D003231 ORTHO05D003865 1.2e-07 62.0 105 38.1
Hma1.2p1_0080F.1_g042200 Hydrangea macrophylla HOM05D003231 ORTHO05D003865 1.2e-07 62.0 103 36.9
Zm00001eb185310 Zea mays HOM05D003231 ORTHO05D003865 1.2e-07 62.0 82 43.9
Hma1.2p1_1544F.1_g289870 Hydrangea macrophylla HOM05D003231 ORTHO05D003865 1.6e-07 61.6 103 36.9
Lj2A622G59 Lonicera japonica HOM05D003231 ORTHO05D003865 1.6e-07 61.6 88 39.8
Lj2A622T60 Lonicera japonica HOM05D003231 ORTHO05D003865 1.6e-07 61.6 103 35.9
arahy.Tifrunner.gnm1.ann1.GT9AC6 Arachis hypogaea HOM05D003231 ORTHO05D003865 2.0e-07 61.2 103 35.9
Prupe.1G462700 Prunus persica HOM05D003231 ORTHO05D003865 2.0e-07 61.2 105 33.3
BolC3t21138H Brassica oleracea HOM05D003231 ORTHO05D003865 2.6e-07 60.8 85 38.8
HanXRQChr15g0494411 Helianthus annuus HOM05D003231 ORTHO05D003865 2.6e-07 60.8 105 36.2
Phvul.009G100100 Phaseolus vulgaris HOM05D003231 ORTHO05D003865 2.6e-07 60.8 85 43.5
PGR044G0019 Punica granatum HOM05D003231 ORTHO05D003865 2.6e-07 60.8 105 38.1
VMungo1309G1009 Vigna mungo HOM05D003231 ORTHO05D003865 2.6e-07 60.8 103 35.9
Ca_15680_v3 Cicer arietinum L. HOM05D003231 ORTHO05D003865 3.5e-07 60.5 95 40.0
Cc01_g06730 Coffea canephora HOM05D003231 ORTHO05D003865 3.5e-07 60.5 91 38.5
Lalb_Chr24g0402411 Lupinus albus HOM05D003231 ORTHO05D003865 3.5e-07 60.5 94 39.4
MD08G1133800 Malus domestica HOM05D003231 ORTHO05D003865 3.5e-07 60.5 85 40.0
Solyc06g054650.3 Solanum lycopersicum HOM05D003231 ORTHO05D003865 3.5e-07 60.5 91 37.4
Sopen06g019710 Solanum pennellii HOM05D003231 ORTHO05D003865 3.5e-07 60.5 91 37.4
COL.COLO4_18634 Corchorus olitorius HOM05D003231 ORTHO05D003865 5.9e-07 59.7 103 35.0
Dinv37392 Davidia involucrata HOM05D003231 ORTHO05D003865 5.9e-07 59.7 103 34.0
Lalb_Chr08g0243641 Lupinus albus HOM05D003231 ORTHO05D003865 5.9e-07 59.7 85 40.0
PSO210G3455 Papaver somniferum HOM05D003231 ORTHO05D003865 7.7e-07 59.3 103 35.0
PSO447G0312 Papaver somniferum HOM05D003231 ORTHO05D003865 7.7e-07 59.3 103 35.0
Medtr3g108690 Medicago truncatula HOM05D003231 ORTHO05D003865 1.0e-06 58.9 85 42.4
THA.LOC104819916 Tarenaya hassleriana HOM05D003231 ORTHO05D003865 1.3e-06 58.5 103 35.0
ATR0796G223 Amborella trichopoda HOM05D003231 ORTHO05D003865 1.7e-06 58.2 108 33.3
Psat5g025840 Pisum sativum HOM05D003231 ORTHO05D003865 1.7e-06 58.2 88 38.6
ECA240G4580 Erigeron canadensis HOM05D003231 ORTHO05D003865 2.2e-06 57.8 103 35.0
Lj5g0000952 Lotus japonicus HOM05D003231 ORTHO05D003865 2.9e-06 57.4 85 41.2
Sp4g03330 Schrenkiella parvula HOM05D003231 ORTHO05D003865 2.9e-06 57.4 87 40.2
Aa31LG7G12420 Aethionema arabicum HOM05D003231 ORTHO05D003865 5.0e-06 56.6 85 37.6
A04p18620 Brassica napus HOM05D003231 ORTHO05D003865 5.0e-06 56.6 87 40.2
Dinv09240 Davidia involucrata HOM05D003231 ORTHO05D003865 5.0e-06 56.6 103 33.0
Migut.K00422 Erythranthe guttata HOM05D003231 ORTHO05D003865 5.0e-06 56.6 95 37.9
HanXRQChr13g0388921 Helianthus annuus HOM05D003231 ORTHO05D003865 8.5e-06 55.8 103 34.0
Lsat_1_v5_gn_7_103361 Lactuca sativa HOM05D003231 ORTHO05D003865 8.5e-06 55.8 105 33.3
TPR.G12121 Trifolium pratense HOM05D003231 ORTHO05D003865 8.5e-06 55.8 103 37.9


User provided reference genes

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