Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002371 Vanilla planifolia HOM05D030214 ORTHO05D030715 3.7e-173 611.7 361 100.0
HPP92_027598 Vanilla planifolia HOM05D030214 ORTHO05D030715 2.4e-164 582.4 361 97.2
HPP92_004354 Vanilla planifolia HOM05D030214 ORTHO05D030715 7.9e-75 285.0 304 53.6
CDE05G1355 Ceratophyllum demersum HOM05D025293 ORTHO05D023580 6.8e-18 95.9 251 31.5
BcaC01g01854 Brassica carinata HOM05D001986 ORTHO05D002283 1.4e-15 88.2 343 38.5
CDE08G0154 Ceratophyllum demersum HOM05D025293 ORTHO05D023580 3.1e-15 87.0 248 28.6
A06p20450 Brassica napus HOM05D001986 ORTHO05D002283 5.4e-15 86.3 328 38.1
BraA06t25120Z Brassica rapa HOM05D001986 ORTHO05D002283 5.4e-15 86.3 328 38.1
HPP92_004345 Vanilla planifolia HOM05D030214 ORTHO05D030715 2.7e-14 84.0 71 56.3
CANSAT56G3655 Cannabis sativa HOM05D001986 ORTHO05D002283 4.5e-14 83.2 348 38.8
Gorai.010G198700 Gossypium raimondii HOM05D001986 ORTHO05D002283 5.9e-14 82.8 265 31.7
THA.LOC104810716 Tarenaya hassleriana HOM05D001986 ORTHO05D002283 7.7e-14 82.4 325 27.4
Thecc.10G023300 Theobroma cacao HOM05D001986 ORTHO05D002283 6.5e-13 79.3 278 27.3
C03p71360 Brassica napus HOM05D001986 ORTHO05D002283 8.6e-13 79.0 356 36.5
Manes.07G126800 Manihot esculenta HOM05D001986 ORTHO05D002283 2.5e-12 77.4 278 27.0
BolC3t19418H Brassica oleracea HOM05D001986 ORTHO05D002283 4.2e-12 76.6 349 37.0
COL.COLO4_25637 Corchorus olitorius HOM05D001986 ORTHO05D002283 5.5e-12 76.3 258 29.8
Lj1A952T45 Lonicera japonica HOM05D001986 ORTHO05D002283 7.2e-12 75.9 275 41.8
AT3G47080 Arabidopsis thaliana HOM05D001986 ORTHO05D002283 9.5e-12 75.5 359 36.5
AT2G29670 Arabidopsis thaliana HOM05D001986 ORTHO05D002283 1.2e-11 75.1 409 34.2
Os10g0501900 Oryza sativa ssp. japonica HOM05D030098 ORTHO05D030327 1.2e-11 75.1 177 31.6
CDE09G1146 Ceratophyllum demersum HOM05D001986 ORTHO05D002283 3.6e-11 73.6 272 41.5
Gohir.D06G169050 Gossypium hirsutum HOM05D001986 ORTHO05D002283 6.1e-11 72.8 256 29.3
PGR142G2445 Punica granatum HOM05D001986 ORTHO05D002283 6.1e-11 72.8 343 36.4
Gohir.D06G174450 Gossypium hirsutum HOM05D001986 ORTHO05D002283 8.0e-11 72.4 266 26.3
BcaC01g02248 Brassica carinata HOM05D001986 ORTHO05D002283 1.4e-10 71.6 281 26.0
PSO135G0701 Papaver somniferum HOM05D025293 ORTHO05D023580 1.4e-10 71.6 244 25.8
PSO384G4924 Papaver somniferum HOM05D025293 ORTHO05D023580 3.0e-10 70.5 241 24.9
AL5G26320 Arabidopsis lyrata HOM05D001986 ORTHO05D002283 4.0e-10 70.1 371 35.8
Gohir.A06G178600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 4.0e-10 70.1 261 24.1
GSVIVG01032859001 Vitis vinifera HOM05D001986 ORTHO05D002283 4.0e-10 70.1 314 39.2
arahy.Tifrunner.gnm1.ann1.LF558K Arachis hypogaea HOM05D001986 ORTHO05D002283 5.2e-10 69.7 272 28.3
arahy.Tifrunner.gnm1.ann1.R531TT Arachis hypogaea HOM05D001986 ORTHO05D002283 5.2e-10 69.7 271 28.8
Nn2g11423 Nelumbo nucifera HOM05D001986 ORTHO05D002283 6.8e-10 69.3 443 28.7
Sed0017568 Sechium edule HOM05D001986 ORTHO05D002283 8.8e-10 68.9 363 33.3
Gohir.A10G233500 Gossypium hirsutum HOM05D001986 ORTHO05D002283 1.2e-09 68.6 298 38.6
unitig_60.g25680 Utricularia gibba HOM05D001986 ORTHO05D002283 1.2e-09 68.6 270 25.9
MBI14_g09431_MAGBIO Magnolia biondii HOM05D001986 ORTHO05D002283 1.5e-09 68.2 207 27.1
Hund15968 Selenicereus undatus HOM05D001986 ORTHO05D002283 2.0e-09 67.8 287 25.8
Gohir.A06G164250 Gossypium hirsutum HOM05D001986 ORTHO05D002283 2.6e-09 67.4 273 27.5
Gorai.011G283500 Gossypium raimondii HOM05D001986 ORTHO05D002283 3.4e-09 67.0 292 38.7
Gohir.D10G245800 Gossypium hirsutum HOM05D001986 ORTHO05D002283 5.7e-09 66.2 295 38.6
Rhsim13G0071200 Rhododendron simsii HOM05D001986 ORTHO05D002283 5.7e-09 66.2 408 28.9
AL4G24440 Arabidopsis lyrata HOM05D001986 ORTHO05D002283 7.5e-09 65.9 407 33.7
Aa31LG1G18880 Aethionema arabicum HOM05D001986 ORTHO05D002283 9.8e-09 65.5 269 24.2
Lj6g0026977 Lotus japonicus HOM05D001986 ORTHO05D002283 9.8e-09 65.5 261 26.4
CDE02G2111 Ceratophyllum demersum HOM05D001986 ORTHO05D002283 1.3e-08 65.1 291 25.4
Duzib114G0515 Durio zibethinus HOM05D001986 ORTHO05D002283 1.3e-08 65.1 284 27.8
Migut.F01415 Erythranthe guttata HOM05D001986 ORTHO05D002283 1.3e-08 65.1 246 24.8
HanXRQChr01g0011391 Helianthus annuus HOM05D001986 ORTHO05D002283 1.7e-08 64.7 322 23.3
AUR62001672 Chenopodium quinoa HOM05D001986 ORTHO05D002283 2.2e-08 64.3 314 23.9
Atru.chr12.3 Acer truncatum HOM05D001986 ORTHO05D002283 2.8e-08 63.9 255 27.1
Aqoxy7G00052 Aquilegia oxysepala HOM05D025293 ORTHO05D023580 2.8e-08 63.9 225 30.7
LjContig00357g0025074 Lotus japonicus HOM05D001986 ORTHO05D002283 2.8e-08 63.9 287 27.5
Sc10g0002220 Simmondsia chinensis HOM05D001986 ORTHO05D002283 3.7e-08 63.5 257 24.5
TWI53G0575 Tripterygium wilfordii HOM05D001986 ORTHO05D002283 3.7e-08 63.5 284 24.3
BcaB01g00948 Brassica carinata HOM05D001986 ORTHO05D002283 6.3e-08 62.8 270 26.7
BNapus_Darmor_BZH_scaffold_82p00010 Brassica napus HOM05D001986 ORTHO05D002283 8.3e-08 62.4 240 25.4
Thhalv10010262m.g Eutrema salsugineum HOM05D001986 ORTHO05D002283 1.1e-07 62.0 309 25.9
Medtr5g082130 Medicago truncatula HOM05D001986 ORTHO05D002283 1.1e-07 62.0 263 28.5
TWI09G0091 Tripterygium wilfordii HOM05D001986 ORTHO05D002283 1.1e-07 62.0 279 24.4
Carub.0004s1077 Capsella rubella HOM05D001986 ORTHO05D002283 1.4e-07 61.6 138 27.5
MD01G1148600 Malus domestica HOM05D001986 ORTHO05D002283 1.8e-07 61.2 395 33.9
Ah.16g103290 Amaranthus hybridus HOM05D001986 ORTHO05D002283 2.4e-07 60.8 345 35.4
FAN03G1061 Fragaria x ananassa HOM05D001986 ORTHO05D002283 2.4e-07 60.8 382 34.3
Manes.10G016300 Manihot esculenta HOM05D001986 ORTHO05D002283 2.4e-07 60.8 272 27.2
BcaC07g42456 Brassica carinata HOM05D001986 ORTHO05D002283 4.1e-07 60.1 124 67.7
FAN06G0884 Fragaria x ananassa HOM05D001986 ORTHO05D002283 4.1e-07 60.1 382 34.8
PSO801G0225 Papaver somniferum HOM05D001986 ORTHO05D002283 4.1e-07 60.1 380 29.2
Os05g0202200 Oryza sativa ssp. japonica HOM05D030098 ORTHO05D030327 5.4e-07 59.7 55 54.5
Prupe.2G247500 Prunus persica HOM05D001986 ORTHO05D002283 5.4e-07 59.7 389 33.9
THA.LOC104826292 Tarenaya hassleriana HOM05D001986 ORTHO05D002283 5.4e-07 59.7 140 30.0
FvH4_7g24140 Fragaria vesca HOM05D001986 ORTHO05D002283 7.0e-07 59.3 382 34.8
QL01p037599 Quercus lobata HOM05D001986 ORTHO05D002283 7.0e-07 59.3 410 32.2
Sp5g14650 Schrenkiella parvula HOM05D001986 ORTHO05D002283 7.0e-07 59.3 303 24.4
CARHR007000 Cardamine hirsuta HOM05D001986 ORTHO05D002283 9.2e-07 58.9 401 31.4
PSO339G3837 Papaver somniferum HOM05D001986 ORTHO05D002283 9.2e-07 58.9 122 29.5
Sabra10G0147400 Salix brachista HOM05D001986 ORTHO05D002283 9.2e-07 58.9 312 26.6
Solyc05g052700.4 Solanum lycopersicum HOM05D001986 ORTHO05D002283 9.2e-07 58.9 269 27.1
CARHR123000 Cardamine hirsuta HOM05D001986 ORTHO05D002283 1.2e-06 58.5 138 27.5
AT1G07280 Arabidopsis thaliana HOM05D001986 ORTHO05D002283 1.6e-06 58.2 139 28.1
AUR62020109 Chenopodium quinoa HOM05D001986 ORTHO05D002283 1.6e-06 58.2 129 27.1
Lalb_Chr17g0346671 Lupinus albus HOM05D001986 ORTHO05D002283 1.6e-06 58.2 265 25.3
PSO339G2754 Papaver somniferum HOM05D001986 ORTHO05D002283 1.6e-06 58.2 319 23.2
RcHm_v2.0_Chr1g0369571 Rosa chinensis HOM05D001986 ORTHO05D002283 1.6e-06 58.2 379 34.0
Sopen05g031220 Solanum pennellii HOM05D001986 ORTHO05D002283 1.6e-06 58.2 245 26.9
CARHR155680 Cardamine hirsuta HOM05D001986 ORTHO05D002283 2.0e-06 57.8 285 25.3
CiPaw.14G060200 Carya illinoinensis HOM05D001986 ORTHO05D002283 2.0e-06 57.8 120 68.3
PGSC0003DMG400027128 Solanum tuberosum HOM05D001986 ORTHO05D002283 2.0e-06 57.8 264 26.5
THA.LOC104800724 Tarenaya hassleriana HOM05D001986 ORTHO05D002283 2.0e-06 57.8 138 29.0
TPR.G19848 Trifolium pratense HOM05D001986 ORTHO05D002283 2.0e-06 57.8 264 25.4
ATR0618G436 Amborella trichopoda HOM05D001986 ORTHO05D002283 2.7e-06 57.4 340 23.8
BraA06t25648Z Brassica rapa HOM05D001986 ORTHO05D002283 2.7e-06 57.4 237 24.9
TAR369G0464 Trochodendron aralioides HOM05D001986 ORTHO05D002283 3.5e-06 57.0 140 27.9
TAR369G0921 Trochodendron aralioides HOM05D001986 ORTHO05D002283 3.5e-06 57.0 140 27.9
GSVIVG01024773001 Vitis vinifera HOM05D001986 ORTHO05D002283 3.5e-06 57.0 122 30.3
Sp1g06030 Schrenkiella parvula HOM05D001986 ORTHO05D002283 4.5e-06 56.6 138 28.3
TAR623G0633 Trochodendron aralioides HOM05D001986 ORTHO05D002283 4.5e-06 56.6 352 23.3
arahy.Tifrunner.gnm1.ann1.ARK6P9 Arachis hypogaea HOM05D001986 ORTHO05D002283 7.8e-06 55.8 139 28.8
arahy.Tifrunner.gnm1.ann1.NG6CAB Arachis hypogaea HOM05D001986 ORTHO05D002283 7.8e-06 55.8 139 28.8
CSS0017587 Camellia sinensis var. sinensis HOM05D001986 ORTHO05D002283 7.8e-06 55.8 291 23.7
Potri.009G044200 Populus trichocarpa HOM05D001986 ORTHO05D002283 7.8e-06 55.8 147 27.2


User provided reference genes

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