Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.9e-72 275.8 143 100.0
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 5.1e-70 267.7 143 97.9
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 1.7e-41 172.9 107 79.4
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 2.9e-41 172.2 108 78.7
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 5.0e-41 171.4 112 79.5
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 5.0e-41 171.4 107 81.3
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 5.0e-41 171.4 107 81.3
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 1.1e-40 170.2 109 77.1
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.1e-40 170.2 117 74.4
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 1.5e-40 169.9 113 76.1
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 2.5e-40 169.1 104 82.7
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 2.5e-40 169.1 104 82.7
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 2.5e-40 169.1 113 74.3
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 4.2e-40 168.3 109 77.1
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 4.2e-40 168.3 108 77.8
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 5.5e-40 167.9 113 73.5
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 7.2e-40 167.5 130 67.7
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 7.2e-40 167.5 112 78.6
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 7.2e-40 167.5 108 77.8
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 9.5e-40 167.2 116 72.4
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 1.2e-39 166.8 107 80.4
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 1.2e-39 166.8 108 78.7
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.2e-39 166.8 123 71.5
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 1.6e-39 166.4 112 75.0
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 1.6e-39 166.4 108 75.9
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 2.1e-39 166.0 112 76.8
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 2.1e-39 166.0 113 73.5
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 2.1e-39 166.0 131 69.5
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 2.8e-39 165.6 112 75.9
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 4.7e-39 164.9 112 74.1
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 6.1e-39 164.5 121 67.8
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 8.0e-39 164.1 107 76.6
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 8.0e-39 164.1 107 77.6
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 1.0e-38 163.7 107 77.6
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.0e-38 163.7 121 66.9
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 1.0e-38 163.7 122 70.5
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 1.0e-38 163.7 122 71.3
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 1.0e-38 163.7 107 73.8
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 1.0e-38 163.7 111 74.8
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 1.4e-38 163.3 108 75.9
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 1.4e-38 163.3 109 76.1
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 1.4e-38 163.3 104 76.9
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 1.4e-38 163.3 107 73.8
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 1.4e-38 163.3 112 73.2
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 1.8e-38 162.9 124 69.4
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 3.0e-38 162.2 109 73.4
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 5.2e-38 161.4 103 78.6
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 5.2e-38 161.4 126 67.5
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 5.2e-38 161.4 108 72.2
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 5.2e-38 161.4 112 72.3
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 6.8e-38 161.0 107 74.8
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 8.9e-38 160.6 122 71.3
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 1.2e-37 160.2 126 67.5
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 2.0e-37 159.5 108 75.9
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 2.0e-37 159.5 108 75.9
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 2.0e-37 159.5 107 74.8
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 2.6e-37 159.1 109 74.3
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 2.6e-37 159.1 107 72.0
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 3.4e-37 158.7 116 67.2
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 3.4e-37 158.7 115 70.4
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 4.4e-37 158.3 120 65.0
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 4.4e-37 158.3 115 69.6
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 5.7e-37 157.9 122 67.2
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 7.5e-37 157.5 112 71.4
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 1.3e-36 156.8 107 72.9
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 1.3e-36 156.8 120 64.2
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 1.7e-36 156.4 123 68.3
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 1.7e-36 156.4 109 71.6
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 2.2e-36 156.0 121 69.4
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 2.2e-36 156.0 120 67.5
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 2.8e-36 155.6 111 71.2
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 3.7e-36 155.2 105 74.3
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 6.3e-36 154.5 130 64.6
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 6.3e-36 154.5 127 63.0
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 8.3e-36 154.1 116 66.4
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 8.3e-36 154.1 123 67.5
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 1.4e-35 153.3 107 74.8
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 2.4e-35 152.5 119 69.7
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 9.2e-35 150.6 112 67.0
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 3.5e-34 148.7 112 63.4
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 3.5e-34 148.7 122 67.2
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 4.5e-34 148.3 107 72.0
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 4.5e-34 148.3 107 72.0
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 1.3e-33 146.7 104 72.1
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 1.3e-33 146.7 120 65.0
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 1.7e-33 146.4 108 66.7
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 2.3e-33 146.0 113 63.7
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 2.3e-33 146.0 113 66.4
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 2.9e-33 145.6 105 66.7
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 3.8e-33 145.2 113 62.8
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 3.8e-33 145.2 105 70.5
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 3.8e-33 145.2 107 68.2
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 5.0e-33 144.8 112 67.9
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 5.0e-33 144.8 163 53.4
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 6.6e-33 144.4 112 62.5
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 6.6e-33 144.4 112 67.0
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 8.6e-33 144.1 107 68.2
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 8.6e-33 144.1 123 61.0
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 8.6e-33 144.1 120 64.2
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 1.5e-32 143.3 110 64.5
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.9e-32 142.9 109 68.8
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 1.6e-31 139.8 114 62.3
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 3.6e-31 138.7 112 64.3
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 4.7e-31 138.3 113 61.1
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 1.4e-30 136.7 113 58.4
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 1.4e-30 136.7 120 62.5
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 3.0e-30 135.6 107 61.7
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 3.0e-30 135.6 163 50.9
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 3.0e-30 135.6 113 60.2
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 5.2e-30 134.8 104 64.4
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 5.2e-30 134.8 95 72.6
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 6.8e-30 134.4 113 60.2
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 6.8e-30 134.4 113 60.2
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 6.8e-30 134.4 113 60.2
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 6.8e-30 134.4 105 62.9
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 8.9e-30 134.0 107 61.7
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 8.9e-30 134.0 107 61.7
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 8.9e-30 134.0 106 62.3
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 1.2e-29 133.7 104 65.4
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 1.5e-29 133.3 104 63.5
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 1.5e-29 133.3 122 59.0
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 2.0e-29 132.9 104 64.4
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 2.6e-29 132.5 103 60.2
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 4.4e-29 131.7 104 63.5
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 4.4e-29 131.7 104 63.5
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 4.4e-29 131.7 104 63.5
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 4.4e-29 131.7 104 63.5
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 4.4e-29 131.7 104 63.5
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 5.8e-29 131.3 104 63.5
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 5.8e-29 131.3 107 63.6
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 3.7e-28 128.6 108 63.0
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 3.7e-28 128.6 99 64.6
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 1.8e-27 126.3 95 65.3
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 9.2e-27 124.0 107 61.7
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 2.7e-26 122.5 103 63.1
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 2.0e-21 106.3 85 62.4
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 5.4e-19 98.2 103 45.6
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 3.1e-14 82.4 87 51.7
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 4.0e-14 82.0 68 63.2
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 5.1e-09 65.1 86 50.0
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 8.6e-09 64.3 101 39.6
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 1.5e-08 63.5 86 48.8
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 2.5e-08 62.8 101 41.6
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 2.5e-08 62.8 96 41.7
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 4.3e-08 62.0 103 38.8
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 4.3e-08 62.0 103 38.8
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 7.3e-08 61.2 103 38.8
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 1.2e-07 60.5 99 39.4
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 1.6e-07 60.1 103 36.9
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 1.6e-07 60.1 103 39.8
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 2.1e-07 59.7 102 38.2
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 2.1e-07 59.7 102 38.2
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 3.6e-07 58.9 101 38.6
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 3.6e-07 58.9 101 39.6
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 4.7e-07 58.5 104 38.5
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 6.2e-07 58.2 103 37.9
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 6.2e-07 58.2 101 37.6
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 8.1e-07 57.8 101 39.6
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 8.1e-07 57.8 103 37.9
Gohir.A04G018500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.1e-06 57.4 101 37.6
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.1e-06 57.4 99 35.4
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 1.1e-06 57.4 99 35.4
Zm00001eb041420 Zea mays HOM05D001962 ORTHO05D002236 1.4e-06 57.0 46 58.7
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 1.8e-06 56.6 101 37.6
Thhalv10011871m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 1.8e-06 56.6 103 38.8
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 1.8e-06 56.6 61 52.5
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 1.8e-06 56.6 101 36.6
CARHR040840 Cardamine hirsuta HOM05D004888 ORTHO05D005792 2.4e-06 56.2 103 39.8
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 2.4e-06 56.2 101 36.6
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 3.1e-06 55.8 101 37.6
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 5.2e-06 55.1 103 35.9
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 5.2e-06 55.1 95 35.8
Actinidia05101 Actinidia chinensis HOM05D004888 ORTHO05D005792 6.8e-06 54.7 101 37.6
AL1G58480 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 6.8e-06 54.7 101 34.7
Cpa.g.sc97.18 Carica papaya HOM05D004888 ORTHO05D005792 6.8e-06 54.7 93 38.7
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 6.8e-06 54.7 101 36.6
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 6.8e-06 54.7 102 36.3
Atru.chr2.3374 Acer truncatum HOM05D004888 ORTHO05D005792 8.9e-06 54.3 102 35.3
A03p41780 Brassica napus HOM05D001160 ORTHO05D005792 8.9e-06 54.3 101 36.6
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 8.9e-06 54.3 101 34.7
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 8.9e-06 54.3 101 38.6
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 8.9e-06 54.3 101 38.6
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 8.9e-06 54.3 101 35.6
Zm00001eb106080 Zea mays HOM05D004888 ORTHO05D005792 8.9e-06 54.3 105 35.2


User provided reference genes

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