Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002322 Vanilla planifolia HOM05D004950 ORTHO05D004838 2.5e-214 748.8 479 100.0
Os04g0450900 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 1.6e-38 164.9 464 33.0
Zm00001eb081260 Zea mays HOM05D020839 ORTHO05D004838 6.4e-32 142.9 474 27.0
Zm00001eb199080 Zea mays HOM05D004950 ORTHO05D004838 5.4e-31 139.8 334 35.0
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 4.7e-27 126.7 461 28.2
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 2.4e-26 124.4 471 31.8
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 5.2e-26 123.2 529 33.1
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 8.9e-26 122.5 370 28.9
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 2.0e-25 121.3 398 29.1
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 3.4e-25 120.6 510 32.2
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 5.8e-25 119.8 474 31.6
Os08g0481100 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 9.9e-25 119.0 359 35.1
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 1.7e-24 118.2 473 28.5
Zm00001eb423860 Zea mays HOM05D020839 ORTHO05D004838 6.4e-24 116.3 476 29.2
Os03g0189300 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 1.2e-22 112.1 330 33.6
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 4.6e-22 110.2 471 31.6
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 8.7e-21 105.9 469 30.7
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 1.1e-20 105.5 499 32.1
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 5.6e-20 103.2 485 31.3
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 7.3e-20 102.8 486 31.3
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 1.6e-19 101.7 476 31.7
HPP92_016777 Vanilla planifolia HOM05D004950 ORTHO05D004838 4.8e-19 100.1 152 43.4
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 8.1e-19 99.4 410 26.1
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 5.3e-18 96.7 385 33.2
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 9.0e-18 95.9 492 32.1
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 9.0e-18 95.9 516 28.3
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 1.5e-17 95.1 250 33.2
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 7.6e-17 92.8 207 34.3
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 7.6e-17 92.8 207 34.3
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 7.6e-17 92.8 207 34.3
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 7.6e-17 92.8 288 30.2
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 1.3e-16 92.0 475 32.0
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 1.3e-16 92.0 195 36.4
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 2.2e-16 91.3 487 24.6
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 2.9e-16 90.9 492 24.8
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 3.8e-16 90.5 235 31.5
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 9.3e-15 85.9 221 29.4
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 1.2e-14 85.5 488 29.9
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 1.6e-14 85.1 418 31.1
Zm00001eb182800 Zea mays HOM05D020839 ORTHO05D004838 2.7e-14 84.3 436 28.4
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 3.5e-14 84.0 405 29.9
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 4.6e-14 83.6 249 31.3
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 6.0e-14 83.2 169 34.3
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 6.0e-14 83.2 557 24.4
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 6.0e-14 83.2 203 33.5
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 1.0e-13 82.4 344 32.3
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 1.0e-13 82.4 200 35.5
Os02g0572600 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 1.3e-13 82.0 473 25.8
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 2.3e-13 81.3 253 29.2
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 2.3e-13 81.3 236 28.8
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 3.9e-13 80.5 283 27.6
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 1.1e-12 79.0 321 27.1
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 1.5e-12 78.6 506 28.1
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 3.3e-12 77.4 476 29.4
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 3.3e-12 77.4 193 33.2
HPP92_005989 Vanilla planifolia HOM05D060657 ORTHO05D004838 3.3e-12 77.4 177 33.9
Sed0023595 Sechium edule HOM05D004950 ORTHO05D004838 4.3e-12 77.0 256 27.7
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 9.6e-12 75.9 230 33.0
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 1.3e-11 75.5 247 29.1
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 1.3e-11 75.5 188 33.5
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 1.3e-11 75.5 435 29.2
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.3e-11 75.5 280 27.1
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 1.3e-11 75.5 194 32.5
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 1.6e-11 75.1 172 36.0
Zm00001eb244690 Zea mays HOM05D020839 ORTHO05D004838 1.6e-11 75.1 428 24.8
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 2.1e-11 74.7 343 30.9
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 2.8e-11 74.3 275 28.4
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 2.8e-11 74.3 356 26.4
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 6.2e-11 73.2 238 28.2
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 8.1e-11 72.8 241 27.8
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 1.1e-10 72.4 166 33.7
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 1.1e-10 72.4 411 25.5
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 1.4e-10 72.0 545 25.3
HPP92_016776 Vanilla planifolia HOM05D060657 ORTHO05D004838 3.1e-10 70.9 171 36.3
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 1.2e-09 68.9 523 32.3
HanXRQChr14g0445051 Helianthus annuus HOM05D004950 ORTHO05D004838 1.5e-09 68.6 153 35.3
CDE10G1056 Ceratophyllum demersum HOM05D002657 ORTHO05D004838 2.0e-09 68.2 122 42.6
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 4.5e-09 67.0 266 25.9
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 9.9e-09 65.9 384 32.3
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 9.9e-09 65.9 237 30.0
ATR0684G198 Amborella trichopoda HOM05D002657 ORTHO05D003059 1.7e-08 65.1 116 39.7
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 1.7e-08 65.1 277 28.2
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 1.7e-08 65.1 127 34.6
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 2.2e-08 64.7 390 23.1
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 3.8e-08 63.9 237 28.7
Dinv17247 Davidia involucrata HOM05D002657 ORTHO05D003059 8.4e-08 62.8 252 26.2
Gohir.A11G051150 Gossypium hirsutum HOM05D004950 ORTHO05D004838 8.4e-08 62.8 283 25.1
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 8.4e-08 62.8 302 25.8
MD01G1237800 Malus domestica HOM05D002657 ORTHO05D003059 1.1e-07 62.4 216 29.2
PGR042G1453 Punica granatum HOM05D002657 ORTHO05D003059 1.1e-07 62.4 289 27.7
Ca_24433_v3 Cicer arietinum L. HOM05D002657 ORTHO05D003059 1.4e-07 62.0 221 30.3
Aqoxy3G02354 Aquilegia oxysepala HOM05D002657 ORTHO05D003059 1.9e-07 61.6 243 27.2
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 2.4e-07 61.2 144 31.2
CDE12G0025 Ceratophyllum demersum HOM05D002657 ORTHO05D003059 2.4e-07 61.2 308 26.6
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 2.4e-07 61.2 241 26.1
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 2.4e-07 61.2 266 24.8
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 3.2e-07 60.8 176 29.5
Gohir.A11G204800 Gossypium hirsutum HOM05D004950 ORTHO05D004838 3.2e-07 60.8 282 25.2
Nn1g05150 Nelumbo nucifera HOM05D002657 ORTHO05D003059 3.2e-07 60.8 251 26.7
Solyc11g010210.1 Solanum lycopersicum HOM05D004950 ORTHO05D004838 3.2e-07 60.8 266 24.8
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 4.2e-07 60.5 236 28.4
PSO782G1876 Papaver somniferum HOM05D002657 ORTHO05D003059 4.2e-07 60.5 129 34.9
LjContig00222g0028031 Lotus japonicus HOM05D002657 ORTHO05D003059 5.5e-07 60.1 219 30.6
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 7.1e-07 59.7 281 26.0
COL.COLO4_15190 Corchorus olitorius HOM05D002657 ORTHO05D003059 9.3e-07 59.3 244 26.2
Nn5g30016 Nelumbo nucifera HOM05D002657 ORTHO05D004838 1.2e-06 58.9 271 25.5
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 1.6e-06 58.5 203 28.6
PSO063G0986 Papaver somniferum HOM05D002657 ORTHO05D003059 1.6e-06 58.5 249 26.1
Gohir.D08G241100 Gossypium hirsutum HOM05D002657 ORTHO05D003059 2.1e-06 58.2 207 31.4
Aa31LG6G15210 Aethionema arabicum HOM05D004950 ORTHO05D004838 2.7e-06 57.8 127 34.6
CSS0046927 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 2.7e-06 57.8 537 33.0
Thecc.05G219100 Theobroma cacao HOM05D002657 ORTHO05D003059 2.7e-06 57.8 175 33.7
CDE06G2427 Ceratophyllum demersum HOM05D002657 ORTHO05D003059 3.5e-06 57.4 284 26.1
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 3.5e-06 57.4 274 33.6
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 4.6e-06 57.0 198 28.8
Nitab4.5_0000571g0050 Nicotiana tabacum HOM05D004950 ORTHO05D004838 6.0e-06 56.6 244 25.0
Psat2g189280 Pisum sativum HOM05D002657 ORTHO05D003059 6.0e-06 56.6 213 28.6
Dinv08856 Davidia involucrata HOM05D004950 ORTHO05D004838 7.9e-06 56.2 294 35.4
TPR.G19616 Trifolium pratense HOM05D002657 ORTHO05D003059 7.9e-06 56.2 209 32.1


User provided reference genes

Program Settings