Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 4.3e-187 657.9 347 100.0
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 2.2e-90 336.7 378 55.6
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 6.4e-90 335.1 378 54.8
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 2.3e-87 326.6 377 52.8
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 3.0e-87 326.2 378 50.8
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 1.1e-86 324.3 371 54.7
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 7.3e-86 321.6 375 54.1
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.1e-85 320.1 378 52.9
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 8.0e-85 318.2 352 50.0
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 5.8e-83 312.0 393 47.3
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 1.3e-82 310.8 375 53.3
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 2.2e-82 310.1 355 53.8
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 8.3e-82 308.1 380 54.2
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 8.3e-82 308.1 369 52.3
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 5.4e-81 305.4 373 50.1
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 2.7e-80 303.1 347 51.9
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 1.0e-79 301.2 331 55.3
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 2.3e-79 300.1 327 55.4
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 3.9e-79 299.3 373 51.2
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 3.9e-79 299.3 353 52.1
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 1.1e-78 297.7 384 45.8
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 2.5e-78 296.6 328 56.1
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 2.5e-78 296.6 393 49.6
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 3.3e-78 296.2 345 52.2
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 4.3e-78 295.8 373 52.8
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 7.3e-78 295.0 353 50.1
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 1.6e-77 293.9 375 49.6
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 2.1e-77 293.5 392 45.9
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 2.1e-77 293.5 400 45.2
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 3.6e-77 292.7 367 49.6
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 6.2e-77 292.0 325 53.5
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 1.1e-76 291.2 376 48.7
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 1.4e-76 290.8 374 48.9
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 4.0e-76 289.3 393 47.8
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 5.2e-76 288.9 387 47.8
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.0e-75 287.0 327 53.5
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 2.0e-75 287.0 193 71.0
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 4.4e-75 285.8 369 49.9
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 5.8e-75 285.4 353 49.9
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 2.2e-74 283.5 377 47.5
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 2.9e-74 283.1 349 51.0
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 3.7e-74 282.7 348 52.9
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 8.3e-74 281.6 383 48.6
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 1.9e-73 280.4 387 49.4
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.9e-73 280.4 375 49.6
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 3.2e-73 279.6 390 47.7
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 7.1e-73 278.5 318 52.2
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 9.2e-73 278.1 388 47.2
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 1.6e-72 277.3 371 49.1
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.1e-72 276.9 397 47.9
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 3.5e-72 276.2 376 46.0
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 4.6e-72 275.8 375 48.5
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 1.3e-71 274.2 396 45.2
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 1.7e-71 273.9 380 49.5
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 2.3e-71 273.5 409 42.5
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 1.5e-70 270.8 391 45.0
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.5e-70 270.0 402 45.5
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 2.5e-70 270.0 379 44.3
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 2.5e-70 270.0 355 49.0
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 4.3e-70 269.2 381 46.7
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 1.6e-69 267.3 395 44.3
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 2.8e-69 266.5 388 43.0
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.7e-69 265.8 388 48.5
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 8.1e-69 265.0 389 45.8
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 1.1e-68 264.6 375 46.7
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.8e-68 263.8 369 48.5
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 4.0e-68 262.7 345 51.6
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 4.0e-68 262.7 354 47.2
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 5.2e-68 262.3 391 48.1
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 2.2e-66 256.9 305 53.4
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 4.9e-66 255.8 310 52.6
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 7.1e-65 251.9 395 43.0
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 1.6e-64 250.8 363 47.9
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 1.6e-64 250.8 391 45.0
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.3e-63 247.7 326 50.3
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.7e-63 247.3 371 45.3
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 1.7e-63 247.3 370 46.2
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 3.0e-63 246.5 351 46.4
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 5.1e-63 245.7 304 48.7
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 4.3e-62 242.7 359 43.7
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 5.6e-62 242.3 372 45.2
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 9.6e-62 241.5 313 49.5
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.3e-61 241.1 301 51.2
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 2.1e-61 240.4 312 49.0
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 3.6e-61 239.6 317 48.6
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.1e-60 236.5 353 43.1
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 4.0e-60 236.1 318 47.8
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 4.0e-60 236.1 318 47.8
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 1.5e-59 234.2 379 42.7
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 2.6e-59 233.4 306 49.0
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 3.4e-59 233.0 318 47.2
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 3.4e-59 233.0 362 44.2
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 4.4e-59 232.6 373 44.5
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 7.6e-59 231.9 306 49.0
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 2.9e-58 229.9 262 51.5
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 8.4e-58 228.4 369 44.7
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.1e-57 228.0 351 43.0
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 2.4e-57 226.9 173 64.7
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 3.2e-57 226.5 314 47.1
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 4.2e-57 226.1 397 41.3
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.5e-54 217.6 165 64.2
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 1.9e-54 217.2 361 41.0
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 6.9e-52 208.8 326 40.8
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 3.2e-49 199.9 232 47.8
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 2.5e-46 190.3 293 46.4
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 2.1e-45 187.2 349 40.1
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 1.9e-41 174.1 287 49.1
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 2.1e-40 170.6 140 59.3
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 6.7e-39 165.6 279 48.4
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 2.5e-38 163.7 177 48.6
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 2.5e-38 163.7 177 48.6
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.9e-33 147.5 106 61.3
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 3.5e-32 143.3 90 72.2
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 3.3e-30 136.7 109 58.7
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 2.2e-29 134.0 139 51.8
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 2.2e-26 124.0 160 40.6
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 5.0e-26 122.9 240 45.8
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.6e-24 116.7 91 59.3
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 1.4e-23 114.8 155 39.4
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 8.8e-23 112.1 279 36.2
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 1.7e-18 97.8 150 34.7
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.2e-18 97.4 64 68.8
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 3.2e-17 93.6 82 51.2
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 8.8e-15 85.5 62 62.9
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 3.3e-14 83.6 134 40.3
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 8.2e-13 79.0 62 58.1
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.6e-11 73.9 63 57.1
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 8.5e-10 68.9 227 33.9
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 3.2e-09 67.0 171 37.4
Zm00001eb041580 Zea mays HOM05D042183 ORTHO05D001571 1.2e-08 65.1 47 63.8
Zm00001eb079560 Zea mays HOM05D042183 ORTHO05D006559 6.1e-08 62.8 47 59.6
Zm00001eb225300 Zea mays HOM05D042183 ORTHO05D006559 1.0e-07 62.0 47 61.7
CBR_g41404 Chara braunii HOM05D002505 ORTHO05D006559 4.4e-06 56.6 72 34.7
QL04p094472 Quercus lobata HOM05D002505 ORTHO05D006559 4.4e-06 56.6 31 77.4


User provided reference genes

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