Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 3.0e-229 798.1 394 100.0
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.0e-160 570.5 390 68.2
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.4e-157 560.1 386 68.1
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 9.9e-156 553.9 389 67.4
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.9e-154 549.7 389 66.8
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.1e-153 546.2 389 66.6
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 3.5e-153 545.4 385 66.8
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 6.0e-153 544.7 386 66.3
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 3.3e-151 538.9 390 66.2
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 4.3e-151 538.5 387 66.4
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 7.3e-151 537.7 385 66.5
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 7.3e-151 537.7 368 69.6
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.3e-150 537.0 390 65.4
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 1.6e-150 536.6 390 66.2
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 2.4e-149 532.7 385 66.5
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 3.1e-149 532.3 390 65.1
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.6e-148 529.3 393 65.1
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.6e-148 529.3 393 65.1
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.6e-148 529.3 385 65.5
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 4.5e-148 528.5 385 65.5
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 5.8e-148 528.1 385 65.7
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 7.6e-148 527.7 390 65.4
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.3e-147 526.9 391 65.2
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 2.2e-147 526.2 392 64.8
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 2.2e-147 526.2 390 64.6
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 4.9e-147 525.0 393 65.4
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 6.4e-147 524.6 385 65.5
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 1.4e-146 523.5 385 65.7
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 1.9e-146 523.1 390 63.3
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 2.4e-146 522.7 390 64.9
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 3.2e-146 522.3 390 65.1
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 4.2e-146 521.9 390 64.4
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 5.4e-146 521.5 390 62.8
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 7.1e-146 521.2 385 64.4
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 9.3e-146 520.8 430 60.7
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.2e-145 520.4 385 64.4
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 2.1e-145 519.6 385 63.9
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 2.1e-145 519.6 390 65.1
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 2.1e-145 519.6 385 65.2
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 2.7e-145 519.2 390 64.4
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.5e-145 518.8 371 67.1
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 4.6e-145 518.5 385 64.9
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 6.0e-145 518.1 378 65.3
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.3e-144 516.2 408 63.0
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.3e-144 516.2 387 64.3
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.5e-143 513.5 390 64.1
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.9e-143 513.1 390 64.1
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 2.5e-143 512.7 396 63.6
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.3e-143 512.3 385 63.9
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 5.6e-143 511.5 390 63.8
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 7.4e-143 511.1 390 62.8
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 7.4e-143 511.1 391 62.9
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 9.6e-143 510.8 383 64.2
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.6e-142 510.0 390 62.3
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 2.1e-142 509.6 387 63.3
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.7e-142 508.8 385 63.9
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 3.7e-142 508.8 385 63.6
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 3.7e-142 508.8 390 63.6
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 3.7e-142 508.8 390 62.3
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 4.8e-142 508.4 390 63.8
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 1.4e-141 506.9 392 62.2
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 2.4e-141 506.1 390 62.1
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 4.0e-141 505.4 390 62.3
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 5.3e-141 505.0 386 62.2
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 2.0e-140 503.1 386 63.0
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 9.9e-140 500.7 390 62.8
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.7e-139 500.0 391 61.1
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 2.9e-139 499.2 364 66.5
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 3.8e-139 498.8 390 60.8
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 6.4e-139 498.0 391 61.1
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 8.4e-139 497.7 390 61.0
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.1e-138 497.3 386 61.9
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 2.4e-138 496.1 370 65.1
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 5.5e-138 495.0 390 61.0
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 5.5e-138 495.0 420 58.1
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 9.3e-138 494.2 390 61.3
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 9.3e-138 494.2 391 61.1
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 9.3e-138 494.2 455 56.0
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.2e-137 493.8 390 61.3
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 1.2e-137 493.8 418 58.9
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 1.6e-137 493.4 390 60.3
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 2.7e-137 492.7 410 58.5
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 1.0e-136 490.7 365 63.3
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 3.1e-133 479.2 387 62.5
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 3.4e-132 475.7 374 59.9
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 4.6e-129 465.3 384 59.9
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 5.1e-128 461.8 355 64.2
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 2.6e-124 449.5 385 57.7
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 1.9e-119 433.3 390 56.7
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 7.4e-119 431.4 339 63.4
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.3e-118 430.6 340 62.4
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 1.4e-117 427.2 372 57.0
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 3.1e-117 426.0 382 58.1
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 3.1e-117 426.0 343 63.0
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 5.3e-117 425.2 384 56.0
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 6.9e-117 424.9 385 54.8
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.7e-115 420.2 346 61.3
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.9e-115 419.5 340 62.1
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 8.5e-115 417.9 381 56.7
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 5.5e-114 415.2 364 59.3
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.2e-113 414.1 390 55.1
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 3.6e-113 412.5 388 52.6
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 7.9e-113 411.4 314 64.3
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 8.8e-112 407.9 347 59.1
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 7.2e-106 388.3 374 54.0
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 3.3e-103 379.4 318 60.4
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 2.9e-99 366.3 294 62.2
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.0e-96 357.8 405 49.1
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 1.7e-91 340.5 530 36.8
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.2e-88 328.9 390 45.9
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 2.2e-86 323.6 277 55.2
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.4e-85 320.9 303 55.1
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 3.5e-84 316.2 370 48.6
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 9.5e-82 308.1 376 45.2
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 9.8e-79 298.1 220 65.5
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.7e-76 290.0 239 59.4
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 1.1e-74 284.6 237 58.6
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 1.9e-74 283.9 245 56.7
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 1.7e-67 260.8 240 56.7
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.3e-66 256.1 203 62.6
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 3.1e-64 250.0 397 38.3
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.9e-61 240.7 390 35.9
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 1.9e-61 240.7 225 55.6
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.3e-59 234.6 187 61.5
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 3.0e-59 233.4 151 69.5
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 2.5e-58 230.3 385 36.6
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.6e-58 229.2 149 70.5
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.1e-57 227.3 371 37.2
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.8e-57 226.9 311 43.1
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 6.2e-57 225.7 165 66.1
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 6.2e-57 225.7 368 37.8
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 3.4e-55 219.9 206 52.9
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 3.7e-54 216.5 393 35.4
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 1.1e-53 214.9 393 36.4
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 2.1e-52 210.7 147 66.7
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 7.3e-50 202.2 148 63.5
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 2.0e-47 194.1 287 39.7
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 2.4e-40 170.6 232 43.5
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 1.5e-39 167.9 109 71.6
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 1.9e-37 161.0 101 74.3
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.2e-36 158.3 96 75.0
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.3e-33 148.3 96 71.9
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.1e-28 131.0 89 62.9
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.1e-28 131.0 89 62.9
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 1.3e-25 121.7 121 56.2
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.3e-25 121.7 427 27.4
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.5e-23 113.2 91 58.2
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.2e-20 105.1 62 72.6
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 8.4e-14 82.4 60 63.3
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 1.8e-11 74.7 80 52.5
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 1.5e-07 61.6 59 50.8
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 2.0e-07 61.2 48 58.3
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 5.9e-07 59.7 49 53.1


User provided reference genes

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