Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 3.7e-238 827.8 414 100.0
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 6.9e-176 620.9 398 76.1
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 2.7e-172 609.0 402 72.4
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 1.1e-170 603.6 388 75.0
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 1.5e-170 603.2 400 74.0
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 3.3e-170 602.1 386 75.9
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 7.4e-170 600.9 433 70.0
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 7.4e-170 600.9 433 70.0
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 9.7e-170 600.5 407 73.2
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 9.7e-170 600.5 407 71.7
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 1.3e-169 600.1 413 71.2
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.7e-169 599.7 396 74.2
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 1.7e-169 599.7 405 72.6
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 1.7e-169 599.7 426 71.8
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 2.8e-169 599.0 405 73.1
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 3.7e-169 598.6 385 74.3
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 8.2e-169 597.4 418 71.3
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 1.4e-168 596.7 381 74.5
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 1.8e-168 596.3 380 75.3
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 2.4e-168 595.9 406 71.9
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 2.4e-168 595.9 406 71.2
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 3.1e-168 595.5 402 72.4
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 3.1e-168 595.5 426 69.7
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 3.1e-168 595.5 387 76.2
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 4.1e-168 595.1 397 73.0
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 4.1e-168 595.1 410 72.2
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 6.9e-168 594.3 405 72.8
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 6.9e-168 594.3 411 72.5
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 6.9e-168 594.3 387 76.2
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 9.1e-168 594.0 395 73.9
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 1.2e-167 593.6 396 72.5
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 2.6e-167 592.4 403 73.2
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 2.6e-167 592.4 406 71.4
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 3.4e-167 592.0 395 73.9
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 4.5e-167 591.7 390 73.8
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 4.5e-167 591.7 405 72.1
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 1.0e-166 590.5 401 74.1
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 1.3e-166 590.1 406 70.9
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 1.3e-166 590.1 386 74.1
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 1.7e-166 589.7 406 70.4
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 2.2e-166 589.3 400 71.0
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 2.2e-166 589.3 400 71.0
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 2.2e-166 589.3 397 72.3
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 2.2e-166 589.3 405 71.1
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 2.2e-166 589.3 406 70.9
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 2.2e-166 589.3 417 69.8
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.9e-166 589.0 386 73.6
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 3.8e-166 588.6 407 71.5
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 3.8e-166 588.6 386 73.3
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 3.8e-166 588.6 402 72.4
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 3.8e-166 588.6 421 69.8
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 3.8e-166 588.6 401 70.3
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 5.0e-166 588.2 359 77.4
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 5.0e-166 588.2 387 73.9
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 5.0e-166 588.2 422 70.9
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 6.5e-166 587.8 411 71.0
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 6.5e-166 587.8 410 70.2
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 1.1e-165 587.0 369 76.7
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 1.4e-165 586.6 398 72.1
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 1.4e-165 586.6 372 75.8
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 1.4e-165 586.6 388 71.9
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 1.4e-165 586.6 410 71.2
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.9e-165 586.3 386 72.8
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 1.9e-165 586.3 402 71.6
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 1.9e-165 586.3 406 70.4
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 1.9e-165 586.3 406 71.2
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.9e-165 586.3 401 71.6
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 2.5e-165 585.9 383 73.9
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 2.5e-165 585.9 402 71.6
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 3.2e-165 585.5 386 72.8
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 4.2e-165 585.1 407 69.5
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 4.2e-165 585.1 372 75.5
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 4.2e-165 585.1 394 71.8
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 4.2e-165 585.1 359 76.3
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 7.2e-165 584.3 386 73.1
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 9.4e-165 583.9 406 70.2
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 1.2e-164 583.6 397 71.8
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 1.2e-164 583.6 359 76.0
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.6e-164 583.2 359 77.2
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 2.7e-164 582.4 415 69.9
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 2.7e-164 582.4 411 71.0
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 3.6e-164 582.0 406 69.5
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 3.6e-164 582.0 407 71.5
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 3.6e-164 582.0 384 73.4
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 4.7e-164 581.6 400 69.8
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 6.1e-164 581.3 409 71.4
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 6.1e-164 581.3 399 71.7
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 7.9e-164 580.9 387 72.6
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 1.4e-163 580.1 410 70.5
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 1.4e-163 580.1 411 68.9
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 2.3e-163 579.3 411 68.9
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 2.3e-163 579.3 361 77.6
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 8.8e-163 577.4 410 69.3
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 8.8e-163 577.4 411 68.9
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.1e-162 577.0 430 67.7
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 1.5e-162 576.6 410 69.3
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 1.5e-162 576.6 385 72.5
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.5e-162 576.6 409 70.4
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 2.0e-162 576.2 410 69.3
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 2.6e-162 575.9 410 69.8
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 7.4e-162 574.3 410 68.8
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 7.4e-162 574.3 410 68.8
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 7.4e-162 574.3 390 70.0
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 9.7e-162 573.9 415 70.8
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 1.3e-161 573.5 396 71.7
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 1.7e-161 573.2 411 68.9
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 8.2e-161 570.9 354 76.3
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 1.4e-160 570.1 392 72.4
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 3.1e-160 568.9 415 68.2
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 5.3e-160 568.2 419 67.5
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 9.1e-160 567.4 372 73.9
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 9.1e-160 567.4 372 73.9
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 6.5e-158 561.2 359 74.4
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 8.5e-158 560.8 410 69.3
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 1.1e-157 560.5 392 70.4
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 6.7e-155 551.2 401 67.6
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 2.0e-154 549.7 357 73.9
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 3.3e-154 548.9 387 69.8
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.8e-152 543.1 385 68.6
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 4.5e-151 538.5 329 76.6
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 1.3e-150 537.0 329 76.6
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 4.2e-149 531.9 331 77.0
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 9.4e-149 530.8 412 66.0
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 1.8e-147 526.6 329 74.8
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 6.8e-147 524.6 359 69.9
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 2.6e-146 522.7 391 65.2
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 3.4e-146 522.3 372 68.8
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 7.5e-146 521.2 422 65.2
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 1.1e-144 517.3 374 67.6
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 1.4e-144 516.9 374 67.6
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 1.2e-140 503.8 331 72.8
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 5.6e-125 451.8 381 59.3
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 7.3e-125 451.4 412 59.2
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 6.4e-121 438.3 369 56.9
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.9e-120 436.8 311 69.1
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 8.9e-115 417.9 388 57.2
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 7.1e-112 408.3 396 53.5
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 1.0e-110 404.4 420 54.0
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 8.9e-107 391.3 386 55.2
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 3.2e-96 356.3 398 52.5
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 9.0e-91 338.2 362 47.2
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 7.1e-80 302.0 256 63.3
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 3.0e-78 296.6 245 62.9
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 5.6e-77 292.4 176 75.6
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 1.4e-75 287.7 176 73.9
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 4.3e-69 266.2 177 72.9
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 9.6e-69 265.0 260 56.9
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 3.6e-63 246.5 235 54.9
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 7.9e-63 245.4 152 77.6
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 6.3e-60 235.7 366 36.1
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.9e-58 229.2 253 51.4
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 1.0e-57 228.4 427 34.2
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 4.2e-56 223.0 323 39.0
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 5.7e-53 212.6 188 59.6
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.3e-49 201.4 175 60.6
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.7e-47 193.7 188 55.3
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 2.0e-45 187.6 163 61.3
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 2.2e-44 184.1 150 62.0
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.9e-41 173.7 108 75.0
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 4.2e-40 169.9 157 57.3
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 1.6e-39 167.9 157 56.7
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.6e-39 166.8 307 40.1
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 4.0e-38 163.3 157 56.1
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 1.7e-36 157.9 152 55.9
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 3.5e-34 150.2 147 55.8
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.9e-25 120.6 111 56.8
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.9e-25 120.6 77 72.7
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 1.1e-24 118.6 83 68.7
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 4.0e-22 110.2 120 50.8
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 4.0e-22 110.2 293 29.4
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.2e-22 109.8 262 35.9
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 1.5e-21 108.2 121 55.4
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 2.8e-20 104.0 63 82.5
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 2.7e-18 97.4 65 81.5
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.7e-18 97.4 129 43.4
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 6.6e-17 92.8 64 70.3
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 8.9e-14 82.4 84 47.6
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 4.9e-12 76.6 55 72.7
ATR0199G031 Amborella trichopoda HOM05D003687 ORTHO05D004571 9.2e-11 72.4 110 45.5
Psat6g182000 Pisum sativum HOM05D002062 ORTHO05D002242 7.3e-08 62.8 43 67.4
SalBow6G6873 Salvia bowleyana HOM05D000052 ORTHO05D000046 4.7e-07 60.1 108 34.3
Sopen04g021110 Solanum pennellii HOM05D001565 ORTHO05D018129 4.7e-07 60.1 40 72.5
Psat3g043760 Pisum sativum HOM05D003687 ORTHO05D018418 1.1e-06 58.9 37 73.0
Solyc04g050430.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 1.1e-06 58.9 41 73.2
Solyc04g150135.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 2.3e-06 57.8 53 54.7


User provided reference genes

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