Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 3.3e-242 841.3 418 100.0
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 3.5e-111 406.0 318 63.5
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 3.7e-108 396.0 318 62.3
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.1e-107 392.9 335 58.8
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 6.9e-107 391.7 352 57.7
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 2.2e-105 386.7 320 60.3
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 2.1e-103 380.2 321 59.5
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 4.6e-103 379.0 333 58.3
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 5.1e-102 375.6 268 67.5
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.1e-99 367.9 313 59.1
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.8e-99 367.1 288 63.9
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 1.8e-99 367.1 291 60.8
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 5.3e-99 365.5 313 59.1
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 4.5e-98 362.5 291 60.1
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 5.9e-98 362.1 291 60.5
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 1.3e-97 360.9 291 60.1
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 1.7e-97 360.5 287 63.1
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 2.9e-97 359.8 321 57.3
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 6.5e-97 358.6 322 57.5
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 8.5e-97 358.2 321 58.3
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.1e-96 357.8 319 57.4
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.1e-96 357.8 292 59.9
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 3.2e-96 356.3 328 54.3
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.2e-95 354.4 313 57.2
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 2.7e-95 353.2 321 57.9
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 3.6e-95 352.8 313 55.9
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.6e-95 352.4 322 56.2
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.0e-94 351.3 284 60.9
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.0e-94 351.3 312 55.8
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.3e-94 350.9 326 54.3
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.3e-94 350.1 283 60.4
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 2.3e-94 350.1 321 54.8
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 3.0e-94 349.7 326 55.2
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 3.0e-94 349.7 322 54.3
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 3.0e-94 349.7 318 54.7
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 3.9e-94 349.4 323 54.5
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 6.7e-94 348.6 332 53.3
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 6.7e-94 348.6 313 55.9
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.9e-93 347.1 318 57.2
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 2.5e-93 346.7 352 50.0
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 2.5e-93 346.7 283 59.0
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.3e-93 345.9 333 52.3
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.3e-93 345.9 329 54.4
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 7.4e-93 345.1 320 54.4
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 2.2e-92 343.6 323 53.3
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.2e-92 343.6 330 53.0
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.8e-92 343.2 333 52.3
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 2.8e-92 343.2 321 54.5
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 2.8e-92 343.2 284 59.9
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 4.8e-92 342.4 313 53.7
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 1.4e-91 340.9 323 53.6
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.8e-91 340.5 327 53.5
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 5.3e-91 339.0 312 53.8
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 9.1e-91 338.2 333 51.4
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 2.0e-90 337.0 328 52.7
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 2.6e-90 336.7 328 52.7
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 2.6e-90 336.7 322 54.7
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 3.4e-90 336.3 344 51.2
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.5e-90 335.9 333 51.1
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 4.5e-90 335.9 332 53.0
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 1.0e-89 334.7 322 52.5
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 1.3e-89 334.3 340 52.4
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.7e-89 334.0 312 52.6
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 2.9e-89 333.2 317 54.9
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 3.8e-89 332.8 318 53.8
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 3.8e-89 332.8 330 51.8
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 6.5e-89 332.0 322 52.2
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 6.5e-89 332.0 329 54.4
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 6.5e-89 332.0 326 53.1
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 1.4e-88 330.9 342 50.9
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.9e-88 330.5 344 52.3
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.9e-88 330.5 315 52.4
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 2.5e-88 330.1 312 53.2
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.5e-88 330.1 274 59.9
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 7.2e-88 328.6 323 52.3
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 9.4e-88 328.2 335 54.6
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.6e-87 327.4 312 53.5
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.6e-87 327.4 274 59.5
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 1.6e-87 327.4 284 56.0
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.7e-87 326.6 359 48.5
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 4.6e-87 325.9 365 49.6
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 6.1e-87 325.5 321 53.6
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 7.9e-87 325.1 320 52.5
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.0e-86 324.7 321 53.3
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 1.0e-86 324.7 326 50.9
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.0e-86 324.7 312 52.2
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.4e-86 324.3 321 53.3
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.4e-86 324.3 325 52.9
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 3.0e-86 323.2 312 52.9
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 5.1e-86 322.4 289 57.1
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.1e-85 321.2 312 52.9
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 1.1e-85 321.2 321 53.0
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 1.1e-85 321.2 326 53.1
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 2.0e-85 320.5 279 57.7
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 5.7e-85 318.9 320 53.4
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 9.7e-85 318.2 318 53.5
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.3e-84 317.8 332 50.3
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 2.2e-84 317.0 287 56.8
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 2.8e-84 316.6 337 50.4
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.8e-84 316.6 297 53.5
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 6.3e-84 315.5 284 57.0
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 6.3e-84 315.5 300 54.7
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 1.4e-83 314.3 334 50.3
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 2.4e-83 313.5 284 56.0
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 4.1e-83 312.8 321 52.3
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 5.3e-83 312.4 323 52.0
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 5.3e-83 312.4 319 50.8
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.2e-82 311.2 313 49.8
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 1.2e-82 311.2 287 54.4
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 7.7e-82 308.5 273 54.9
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 5.5e-80 302.4 289 55.4
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 3.6e-79 299.7 273 55.7
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 3.5e-66 256.5 330 45.2
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 5.9e-66 255.8 260 52.7
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.7e-63 246.9 280 45.0
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 6.8e-62 242.3 286 47.9
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 3.4e-61 240.0 280 47.1
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 9.8e-61 238.4 295 43.1
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 4.5e-58 229.6 288 44.4
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 8.0e-55 218.8 271 46.1
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 1.8e-51 207.6 187 56.7
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 3.1e-51 206.8 188 55.3
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 7.0e-51 205.7 332 38.0
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.0e-42 177.6 163 55.2
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 8.3e-36 155.6 174 48.9
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 4.6e-26 123.2 124 51.6
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 1.2e-23 115.2 86 59.3
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 3.1e-22 110.5 124 47.6
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.1e-16 92.0 171 39.2
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.5e-16 91.7 104 48.1
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 2.1e-15 87.8 87 54.0
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 2.1e-15 87.8 87 54.0
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 2.8e-15 87.4 63 68.3
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 9.0e-14 82.4 87 48.3
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 4.9e-12 76.6 95 49.5
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.1e-09 66.6 70 50.0
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.3e-08 63.5 97 37.1


User provided reference genes

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