Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002192 Vanilla planifolia HOM05D006917 ORTHO05D008297 8.5e-199 696.8 356 100.0
Manes.13G151300 Manihot esculenta HOM05D006917 ORTHO05D008297 1.1e-89 334.3 319 55.5
Eucgr.D00334 Eucalyptus grandis HOM05D006917 ORTHO05D008297 3.2e-89 332.8 266 61.7
Cfa014546 Carpinus fangiana HOM05D006917 ORTHO05D008297 5.5e-89 332.0 346 53.5
MBI19_g29221_MAGBIO Magnolia biondii HOM05D006917 ORTHO05D008297 1.2e-88 330.9 260 64.2
Nn1g03886 Nelumbo nucifera HOM05D006917 ORTHO05D008297 4.7e-88 328.9 351 51.9
Atru.chr6.3069 Acer truncatum HOM05D006917 ORTHO05D008297 3.0e-87 326.2 267 61.4
Hma1.2p1_0565F.1_g179500 Hydrangea macrophylla HOM05D006917 ORTHO05D008297 4.0e-87 325.9 268 62.7
Haze_13090 Corylus avellana HOM05D006917 ORTHO05D008297 5.2e-87 325.5 267 62.9
GSVIVG01030015001 Vitis vinifera HOM05D006917 ORTHO05D008297 8.8e-87 324.7 256 63.7
CiPaw.03G170000 Carya illinoinensis HOM05D006917 ORTHO05D008297 2.6e-86 323.2 267 62.2
MD09G1093800 Malus domestica HOM05D006917 ORTHO05D008297 9.8e-86 321.2 319 54.2
Cc05_g06310 Coffea canephora HOM05D006917 ORTHO05D008297 1.7e-85 320.5 255 60.8
Prupe.3G231600 Prunus persica HOM05D006917 ORTHO05D008297 2.8e-85 319.7 342 51.2
CANSAT64G1157 Cannabis sativa HOM05D006917 ORTHO05D008297 1.8e-84 317.0 271 59.8
QL08p037351 Quercus lobata HOM05D006917 ORTHO05D008297 3.1e-84 316.2 349 50.7
HanXRQChr06g0170991 Helianthus annuus HOM05D006917 ORTHO05D008297 5.4e-84 315.5 316 50.6
Cpa.g.sc53.106 Carica papaya HOM05D006917 ORTHO05D008297 9.1e-84 314.7 271 59.0
Potri.013G146900 Populus trichocarpa HOM05D006917 ORTHO05D008297 9.1e-84 314.7 341 50.1
Ciclev10015637m.g Citrus clementina HOM05D006917 ORTHO05D008297 1.6e-83 313.9 267 60.7
Gorai.013G073800 Gossypium raimondii HOM05D006917 ORTHO05D008297 2.7e-83 313.2 267 58.1
Gohir.A13G056900 Gossypium hirsutum HOM05D006917 ORTHO05D008297 3.5e-83 312.8 273 57.9
Duzib132G0607 Durio zibethinus HOM05D006917 ORTHO05D008297 5.9e-83 312.0 356 50.0
Aqoxy3G03605 Aquilegia oxysepala HOM05D006917 ORTHO05D008297 2.9e-82 309.7 272 59.6
COL.COLO4_13687 Corchorus olitorius HOM05D006917 ORTHO05D008297 2.9e-82 309.7 274 59.9
Thecc.02G172300 Theobroma cacao HOM05D006917 ORTHO05D008297 2.9e-82 309.7 356 50.0
Dinv15489 Davidia involucrata HOM05D006917 ORTHO05D008297 6.5e-82 308.5 300 55.0
Phvul.011G111800 Phaseolus vulgaris HOM05D006917 ORTHO05D008297 6.5e-82 308.5 267 57.7
RcHm_v2.0_Chr2g0161911 Rosa chinensis HOM05D006917 ORTHO05D008297 8.5e-82 308.1 271 58.3
CSS0047204 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 1.1e-81 307.8 269 59.1
Peaxi162Scf00608g00317 Petunia axillaris HOM05D006917 ORTHO05D008297 1.1e-81 307.8 271 56.8
PGSC0003DMG401021671 Solanum tuberosum HOM05D006917 ORTHO05D008297 1.5e-81 307.4 264 58.0
THA.LOC104825523 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 1.5e-81 307.4 299 52.5
TWI36G0541 Tripterygium wilfordii HOM05D006917 ORTHO05D008297 1.5e-81 307.4 289 52.9
CSS0012077 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 1.9e-81 307.0 269 59.1
BolC7t46080H Brassica oleracea HOM05D006917 ORTHO05D008297 2.5e-81 306.6 314 53.2
VMungo1127G0570 Vigna mungo HOM05D006917 ORTHO05D008297 5.5e-81 305.4 267 57.3
PGR042G0968 Punica granatum HOM05D006917 ORTHO05D008297 9.4e-81 304.7 266 57.5
FvH4_6g44760 Fragaria vesca HOM05D006917 ORTHO05D008297 1.2e-80 304.3 271 56.5
FAN14G5902 Fragaria x ananassa HOM05D006917 ORTHO05D008297 2.7e-80 303.1 271 56.5
PSO832G2257 Papaver somniferum HOM05D006917 ORTHO05D008297 2.7e-80 303.1 270 57.0
Sopen10g004420 Solanum pennellii HOM05D006917 ORTHO05D008297 2.7e-80 303.1 283 53.7
Solyc10g008600.3 Solanum lycopersicum HOM05D006917 ORTHO05D008297 3.6e-80 302.8 264 56.8
Lsat_1_v5_gn_3_39800 Lactuca sativa HOM05D006917 ORTHO05D008297 6.1e-80 302.0 311 50.8
AL7G24390 Arabidopsis lyrata HOM05D006917 ORTHO05D008297 8.0e-80 301.6 361 48.8
FAN02G4118 Fragaria x ananassa HOM05D006917 ORTHO05D008297 8.0e-80 301.6 271 56.1
FAN09G3443 Fragaria x ananassa HOM05D006917 ORTHO05D008297 8.0e-80 301.6 271 56.5
Carub.0007s1255 Capsella rubella HOM05D006917 ORTHO05D008297 1.0e-79 301.2 362 47.2
CARHR235920 Cardamine hirsuta HOM05D006917 ORTHO05D008297 1.8e-79 300.4 340 49.4
PSO210G6334 Papaver somniferum HOM05D006917 ORTHO05D008297 1.8e-79 300.4 291 53.6
C07p56030 Brassica napus HOM05D006917 ORTHO05D008297 2.3e-79 300.1 312 52.2
Thhalv10025608m.g Eutrema salsugineum HOM05D006917 ORTHO05D008297 3.0e-79 299.7 363 49.0
FAN05G2664 Fragaria x ananassa HOM05D006917 ORTHO05D008297 3.0e-79 299.7 271 56.5
Lj3g0010136 Lotus japonicus HOM05D006917 ORTHO05D008297 3.0e-79 299.7 267 56.9
A03p57910 Brassica napus HOM05D006917 ORTHO05D008297 5.2e-79 298.9 280 55.4
Sp7g26170 Schrenkiella parvula HOM05D006917 ORTHO05D008297 5.2e-79 298.9 362 47.2
Glyma.06G298100 Glycine max HOM05D006917 ORTHO05D008297 8.8e-79 298.1 259 57.9
THA.LOC104807893 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 8.8e-79 298.1 272 54.4
BraA03t14855Z Brassica rapa HOM05D006917 ORTHO05D008297 1.2e-78 297.7 280 55.4
AT4G28210 Arabidopsis thaliana HOM05D006917 ORTHO05D008297 1.5e-78 297.4 311 51.8
Sabra13G0118400 Salix brachista HOM05D006917 ORTHO05D008297 1.5e-78 297.4 300 52.7
DCAR_009726 Daucus carota HOM05D006917 ORTHO05D008297 2.6e-78 296.6 261 60.2
Glyma.12G107100 Glycine max HOM05D006917 ORTHO05D008297 2.6e-78 296.6 264 56.4
ECA246G1823 Erigeron canadensis HOM05D006917 ORTHO05D008297 1.3e-77 294.3 268 54.1
Gohir.D13G065000 Gossypium hirsutum HOM05D006917 ORTHO05D008297 1.3e-77 294.3 257 56.4
Lalb_Chr19g0135451 Lupinus albus HOM05D006917 ORTHO05D008297 3.7e-77 292.7 261 54.4
BcaC06g32638 Brassica carinata HOM05D006917 ORTHO05D008297 1.4e-76 290.8 312 50.6
Lalb_Chr03g0029201 Lupinus albus HOM05D006917 ORTHO05D008297 1.4e-76 290.8 284 51.8
BcaNung01588 Brassica carinata HOM05D006917 ORTHO05D008297 2.4e-76 290.0 307 51.8
Sed0009072 Sechium edule HOM05D006917 ORTHO05D008297 4.1e-76 289.3 357 45.1
Aa31LG2G22070 Aethionema arabicum HOM05D006917 ORTHO05D008297 5.4e-76 288.9 370 46.2
MSTRG.18638 Avicennia marina HOM05D006917 ORTHO05D008297 5.4e-76 288.9 265 57.4
AUR62044684 Chenopodium quinoa HOM05D006917 ORTHO05D008297 1.2e-75 287.7 301 50.8
Migut.M00331 Erythranthe guttata HOM05D006917 ORTHO05D008297 1.2e-75 287.7 283 53.4
Sc21g0002460 Simmondsia chinensis HOM05D006917 ORTHO05D008297 1.6e-75 287.3 276 54.7
EL10Ac9g22343 Beta vulgaris HOM05D006917 ORTHO05D008297 2.0e-75 287.0 281 52.7
ClCG01G000980 Citrullus lanatus HOM05D006917 ORTHO05D008297 3.5e-75 286.2 265 55.1
SalBow7G0082 Salvia bowleyana HOM05D006917 ORTHO05D008297 4.5e-75 285.8 319 49.2
A01p19630 Brassica napus HOM05D006917 ORTHO05D008297 7.7e-75 285.0 319 50.2
Ah.04g154320 Amaranthus hybridus HOM05D006917 ORTHO05D008297 5.0e-74 282.3 273 53.5
CDE12G0159 Ceratophyllum demersum HOM05D006917 ORTHO05D008297 2.5e-73 280.0 270 52.2
BraA01t01896Z Brassica rapa HOM05D006917 ORTHO05D008297 3.3e-73 279.6 329 48.0
arahy.Tifrunner.gnm1.ann1.RY5XZD Arachis hypogaea HOM05D006917 ORTHO05D008297 4.3e-73 279.3 262 53.1
arahy.Tifrunner.gnm1.ann1.43ZBCD Arachis hypogaea HOM05D006917 ORTHO05D008297 2.8e-72 276.6 262 52.3
Psat7g195960 Pisum sativum HOM05D006917 ORTHO05D008297 6.1e-72 275.4 262 53.4
unitig_746.g26713 Utricularia gibba HOM05D006917 ORTHO05D008297 6.1e-72 275.4 283 52.3
TPR.G21667 Trifolium pratense HOM05D006917 ORTHO05D008297 8.0e-72 275.0 270 53.0
MELO3C005833.2 Cucumis melo HOM05D006917 ORTHO05D008297 1.0e-71 274.6 354 43.5
Actinidia30487 Actinidia chinensis HOM05D006917 ORTHO05D008297 1.8e-71 273.9 266 51.5
AUR62037382 Chenopodium quinoa HOM05D006917 ORTHO05D008297 1.8e-71 273.9 301 49.2
Ca_20697_v3 Cicer arietinum L. HOM05D006917 ORTHO05D008297 6.8e-71 271.9 268 51.9
SGA_v2.0_scaffold70G23465 Striga asiatica HOM05D006917 ORTHO05D008297 6.8e-71 271.9 350 43.4
Hund08056 Selenicereus undatus HOM05D006917 ORTHO05D008297 2.0e-70 270.4 261 53.6
Medtr4g046023 Medicago truncatula HOM05D006917 ORTHO05D008297 9.8e-70 268.1 269 50.2
CsaV3_5G001130 Cucumis sativus L. HOM05D006917 ORTHO05D008297 6.4e-69 265.4 273 52.7
Nitab4.5_0003195g0010 Nicotiana tabacum HOM05D006917 ORTHO05D008297 5.9e-67 258.8 229 56.3
Lj8P117T42 Lonicera japonica HOM05D006917 ORTHO05D008297 2.3e-66 256.9 230 55.2
C01p24650 Brassica napus HOM05D006917 ORTHO05D008297 3.3e-65 253.1 292 49.0
BcaC09g50505 Brassica carinata HOM05D006917 ORTHO05D008297 7.3e-65 251.9 329 45.9
Nitab4.5_0000635g0150 Nicotiana tabacum HOM05D006917 ORTHO05D008297 1.2e-64 251.1 261 50.2
TAR629G2913 Trochodendron aralioides HOM05D006917 ORTHO05D008297 1.0e-63 248.1 203 61.6
PGSC0003DMG400029584 Solanum tuberosum HOM05D006917 ORTHO05D008297 2.6e-62 243.4 206 57.8
BolC1t02415H Brassica oleracea HOM05D006917 ORTHO05D008297 1.3e-58 231.1 292 46.6
ATR0693G234 Amborella trichopoda HOM05D006917 ORTHO05D008297 8.6e-58 228.4 233 54.5
MD17G1083500 Malus domestica HOM05D006917 ORTHO05D008297 4.6e-43 179.5 151 59.6
arahy.Tifrunner.gnm1.ann1.C6FW5S Arachis hypogaea HOM05D006917 ORTHO05D008297 1.0e-34 151.8 163 48.5
arahy.Tifrunner.gnm1.ann1.29DNDL Arachis hypogaea HOM05D006917 ORTHO05D008297 5.4e-28 129.4 136 47.1
SEGI_04255 Sequoiadendron giganteum HOM05D006917 ORTHO05D008297 1.0e-26 125.2 274 33.2
AagrBONN_evm.TU.Sc2ySwM_228.5823 Anthoceros agrestis HOM05D006917 ORTHO05D008297 5.8e-22 109.4 275 28.0
MD17G1083600 Malus domestica HOM05D006917 ORTHO05D008297 4.8e-16 89.7 75 64.0
SEGI_37556 Sequoiadendron giganteum HOM05D006917 ORTHO05D008297 1.8e-15 87.8 191 34.0
SMO300G0012 Selaginella moellendorffii HOM05D006917 ORTHO05D008297 2.1e-08 64.3 205 29.3
Aqoxy3G03603 Aquilegia oxysepala HOM05D006917 ORTHO05D008297 9.0e-07 58.9 65 58.5


User provided reference genes

Program Settings