Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 7.7e-180 633.6 309 100.0
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.4e-133 479.2 305 71.5
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 1.5e-130 469.9 303 69.6
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 3.3e-130 468.8 309 69.6
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 1.2e-129 466.8 309 70.2
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 1.2e-129 466.8 304 70.1
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 2.8e-129 465.7 302 68.9
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 2.8e-129 465.7 301 70.8
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 3.6e-129 465.3 301 70.1
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.7e-129 464.9 309 70.2
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 8.1e-129 464.2 302 70.2
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 2.0e-127 459.5 305 69.2
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 2.0e-127 459.5 303 69.6
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 2.6e-127 459.1 309 69.6
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 3.4e-127 458.8 297 69.0
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 4.4e-127 458.4 311 68.2
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 7.6e-127 457.6 302 69.5
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 7.6e-127 457.6 306 69.0
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 9.9e-127 457.2 304 69.4
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 2.9e-126 455.7 302 69.9
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 3.8e-126 455.3 303 68.3
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 3.8e-126 455.3 302 69.2
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 3.8e-126 455.3 301 68.8
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 3.8e-126 455.3 309 67.6
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 3.8e-126 455.3 309 69.9
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 6.4e-126 454.5 301 69.1
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.1e-125 453.8 303 69.3
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 1.1e-125 453.8 312 67.9
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 1.4e-125 453.4 303 67.3
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.4e-125 453.4 301 69.1
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 3.2e-125 452.2 301 67.8
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 3.2e-125 452.2 311 69.1
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 3.2e-125 452.2 301 67.4
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 4.2e-125 451.8 307 68.4
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 4.2e-125 451.8 306 68.0
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 4.2e-125 451.8 307 68.1
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 9.3e-125 450.7 305 68.5
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.2e-124 450.3 306 66.7
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 1.2e-124 450.3 307 68.1
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 1.6e-124 449.9 301 67.8
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.6e-124 449.9 301 68.8
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 1.6e-124 449.9 301 67.1
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 2.1e-124 449.5 309 67.0
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 2.1e-124 449.5 309 67.6
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.7e-124 449.1 300 68.7
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 4.6e-124 448.4 309 66.7
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.6e-124 448.4 303 68.3
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 6.0e-124 448.0 301 66.8
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 7.8e-124 447.6 306 66.3
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 1.0e-123 447.2 309 66.3
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 1.0e-123 447.2 309 68.0
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 1.7e-123 446.4 308 66.2
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 2.3e-123 446.0 307 67.4
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 3.9e-123 445.3 304 66.4
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 6.6e-123 444.5 300 66.7
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 8.7e-123 444.1 301 66.1
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 2.5e-122 442.6 303 66.3
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 5.6e-122 441.4 309 67.3
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 5.6e-122 441.4 309 67.0
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 7.3e-122 441.0 305 66.9
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.6e-121 439.9 309 67.0
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 3.6e-121 438.7 309 64.4
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 3.6e-121 438.7 306 65.4
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 4.8e-121 438.3 309 64.1
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 4.8e-121 438.3 308 64.3
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 4.8e-121 438.3 299 64.9
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 4.8e-121 438.3 314 64.3
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 6.2e-121 438.0 302 65.9
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 1.1e-120 437.2 309 64.4
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 1.8e-120 436.4 309 64.4
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 2.4e-120 436.0 302 65.6
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 3.1e-120 435.6 309 64.7
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 5.3e-120 434.9 308 64.3
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 6.9e-120 434.5 308 63.6
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 9.0e-120 434.1 309 64.1
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.2e-119 433.7 327 63.3
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 2.6e-119 432.6 309 65.4
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 2.6e-119 432.6 310 65.5
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 2.6e-119 432.6 304 66.1
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.6e-119 432.6 383 57.2
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 3.4e-119 432.2 309 65.0
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 5.8e-119 431.4 305 64.9
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 7.6e-119 431.0 307 63.8
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 7.6e-119 431.0 308 63.6
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 9.9e-119 430.6 307 63.8
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 9.9e-119 430.6 309 66.7
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 1.3e-118 430.3 310 63.5
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 1.7e-118 429.9 301 65.1
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 2.2e-118 429.5 381 57.5
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 2.9e-118 429.1 306 63.1
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 2.9e-118 429.1 307 63.8
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 4.9e-118 428.3 307 63.2
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 6.4e-118 427.9 306 65.4
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 8.4e-118 427.6 308 66.6
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.9e-117 426.4 308 66.2
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 7.1e-117 424.5 306 65.0
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 1.0e-115 420.6 306 63.7
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 5.1e-115 418.3 345 60.0
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 5.6e-114 414.8 309 63.4
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 2.1e-113 412.9 314 61.1
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 4.0e-112 408.7 318 62.9
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 2.4e-109 399.4 301 61.8
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.3e-105 387.1 257 67.7
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 2.9e-102 375.9 268 64.2
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 3.8e-102 375.6 309 58.9
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 3.5e-100 369.0 265 63.8
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.8e-97 358.6 238 68.9
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 7.6e-95 351.3 307 54.4
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.9e-93 346.7 257 60.7
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 4.6e-92 342.0 216 71.8
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 2.3e-91 339.7 301 54.8
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 2.6e-87 326.2 301 51.5
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 1.3e-86 323.9 291 52.2
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.3e-83 313.2 301 52.8
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-80 304.3 201 69.7
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 1.0e-78 297.7 266 54.9
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 6.1e-76 288.5 210 61.0
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 3.9e-75 285.8 177 72.9
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 2.6e-74 283.1 177 72.3
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 4.4e-66 255.8 237 50.6
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 1.8e-64 250.4 178 65.7
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 2.3e-59 233.4 181 63.0
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.3e-51 206.8 142 65.5
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 9.8e-50 201.4 185 52.4
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.1e-45 188.0 127 65.4
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.2e-44 184.5 170 50.6
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 3.6e-44 183.0 130 65.4
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 6.8e-43 178.7 130 61.5
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 5.7e-42 175.6 130 64.6
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 3.2e-40 169.9 107 72.9
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.3e-35 153.7 116 61.2
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.4e-32 144.4 110 61.8
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 3.5e-31 139.8 112 59.8
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.8e-31 138.7 109 56.9
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 6.6e-30 135.6 105 60.0
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 6.8e-19 99.0 74 60.8
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.0e-14 85.1 52 69.2


User provided reference genes

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