Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 5.8e-145 517.7 256 100.0
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 1.3e-136 490.0 256 93.8
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 7.1e-135 484.2 256 91.8
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 9.3e-135 483.8 256 91.8
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 2.1e-134 482.6 256 91.8
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.1e-134 482.6 256 91.8
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 3.5e-134 481.9 256 91.8
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 6.0e-134 481.1 256 91.4
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 7.9e-134 480.7 256 92.2
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.0e-133 480.3 256 91.4
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.3e-133 479.9 256 91.0
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 1.3e-133 479.9 255 92.2
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.8e-133 479.6 256 91.8
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.8e-133 479.6 256 92.2
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.8e-133 479.6 256 91.0
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.3e-133 479.2 256 91.8
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 3.0e-133 478.8 256 91.4
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 6.7e-133 477.6 256 91.4
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 6.7e-133 477.6 256 91.4
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 1.1e-132 476.9 256 91.8
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.5e-132 476.5 256 90.6
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 1.5e-132 476.5 256 91.0
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 1.5e-132 476.5 256 91.4
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 1.5e-132 476.5 256 91.4
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.9e-132 476.1 256 91.4
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.9e-132 476.1 256 91.0
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 2.5e-132 475.7 255 90.6
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 3.3e-132 475.3 256 91.0
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 3.3e-132 475.3 256 91.0
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 4.3e-132 474.9 256 91.4
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 4.3e-132 474.9 256 90.2
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 4.3e-132 474.9 256 90.6
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 4.3e-132 474.9 256 91.0
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 5.6e-132 474.6 256 90.6
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 5.6e-132 474.6 256 89.5
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 5.6e-132 474.6 255 91.4
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.4e-132 474.2 256 91.0
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 7.4e-132 474.2 256 91.0
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 9.6e-132 473.8 256 90.2
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.6e-132 473.8 256 91.0
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 9.6e-132 473.8 256 91.0
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 9.6e-132 473.8 256 89.8
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 9.6e-132 473.8 256 89.8
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.3e-131 473.4 256 90.6
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.3e-131 473.4 256 91.0
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 1.6e-131 473.0 256 90.6
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 2.8e-131 472.2 256 90.2
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 2.8e-131 472.2 256 90.2
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 3.7e-131 471.9 256 89.8
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 3.7e-131 471.9 256 90.2
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 3.7e-131 471.9 256 90.2
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 4.8e-131 471.5 255 90.2
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 4.8e-131 471.5 260 89.2
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 6.2e-131 471.1 256 90.2
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 6.2e-131 471.1 256 90.2
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 8.1e-131 470.7 256 90.2
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.1e-130 470.3 256 90.6
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 1.1e-130 470.3 256 90.2
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 1.1e-130 470.3 256 89.5
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 1.1e-130 470.3 256 89.5
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 2.4e-130 469.2 256 89.5
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 3.1e-130 468.8 256 88.7
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 3.1e-130 468.8 256 89.5
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 3.1e-130 468.8 256 88.7
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 3.1e-130 468.8 256 89.5
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 4.0e-130 468.4 255 89.4
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 4.0e-130 468.4 255 89.4
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.0e-130 468.4 255 89.4
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 5.3e-130 468.0 256 89.1
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 5.3e-130 468.0 256 88.7
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 5.3e-130 468.0 256 88.7
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 6.9e-130 467.6 256 89.1
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 6.9e-130 467.6 256 89.1
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 9.0e-130 467.2 256 89.1
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.2e-129 466.8 255 89.4
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 1.5e-129 466.5 256 89.1
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 1.5e-129 466.5 255 88.6
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 2.0e-129 466.1 253 90.1
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 2.6e-129 465.7 255 88.6
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 3.4e-129 465.3 264 87.1
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 3.4e-129 465.3 256 88.7
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 3.4e-129 465.3 256 89.1
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 5.8e-129 464.5 256 89.1
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 7.6e-129 464.2 256 89.5
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 7.6e-129 464.2 255 89.4
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 9.9e-129 463.8 256 88.7
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 1.7e-128 463.0 256 87.9
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 2.9e-128 462.2 256 87.9
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 3.8e-128 461.8 255 89.0
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 3.8e-128 461.8 256 88.3
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 6.4e-128 461.1 280 82.9
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 8.4e-128 460.7 255 87.1
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.5e-127 459.1 256 88.3
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 2.5e-127 459.1 255 87.1
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 2.5e-127 459.1 256 88.3
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 4.2e-127 458.4 255 86.7
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 2.1e-126 456.1 259 86.9
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 4.6e-126 454.9 256 87.1
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 6.0e-126 454.5 240 92.9
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 7.9e-126 454.1 256 85.2
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.8e-125 453.0 256 86.7
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.8e-125 453.0 256 86.3
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.3e-125 452.6 256 85.9
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 2.3e-125 452.6 256 85.5
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 5.1e-125 451.4 256 84.8
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 8.7e-125 450.7 256 84.4
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.1e-124 450.3 256 84.8
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 2.5e-124 449.1 256 85.2
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 3.3e-124 448.7 256 85.9
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.3e-124 448.7 271 83.0
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.3e-124 448.7 256 86.7
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 4.3e-124 448.4 255 85.9
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 4.3e-124 448.4 255 85.9
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 5.6e-124 448.0 256 85.5
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 5.6e-124 448.0 256 85.5
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 7.4e-124 447.6 256 85.2
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 9.6e-124 447.2 256 85.2
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 9.6e-124 447.2 256 85.9
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 9.6e-124 447.2 256 85.9
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 3.7e-123 445.3 254 85.8
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 3.7e-123 445.3 254 85.8
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 3.7e-123 445.3 256 83.2
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 6.2e-123 444.5 256 84.8
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 8.2e-123 444.1 255 85.1
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 6.9e-122 441.0 256 85.2
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 9.0e-122 440.7 256 83.6
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 1.0e-120 437.2 256 85.2
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.8e-120 435.3 241 88.4
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-119 433.7 241 88.0
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 4.2e-119 431.8 256 82.8
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 6.0e-118 427.9 256 82.8
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 3.9e-117 425.2 271 79.3
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 3.7e-115 418.7 255 76.9
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 8.2e-115 417.5 256 81.6
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 8.2e-115 417.5 256 81.6
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 4.5e-113 411.8 256 78.9
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.9e-112 409.1 256 82.0
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 6.5e-112 407.9 256 77.3
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.5e-111 406.0 260 78.5
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.8e-109 399.8 222 88.7
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 2.5e-108 396.0 208 91.3
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 4.3e-108 395.2 255 78.8
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.8e-107 391.7 337 62.6
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.4e-106 390.2 256 78.1
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 3.4e-105 385.6 240 80.4
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 5.9e-105 384.8 254 76.4
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.2e-104 382.9 306 69.6
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 2.9e-104 382.5 196 93.9
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 6.3e-99 364.8 190 90.5
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.4e-98 363.6 200 89.0
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 5.5e-95 351.7 257 74.7
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 3.7e-91 339.0 256 64.1
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 8.5e-88 327.8 177 88.1
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 3.5e-81 305.8 156 93.6
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 9.5e-71 271.2 229 59.0
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.8e-66 256.9 235 59.1
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 7.5e-60 235.0 135 88.9
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.9e-55 220.3 142 78.2
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 3.3e-55 219.5 143 77.6
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 3.3e-55 219.5 108 95.4
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 7.1e-50 201.8 98 95.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 3.2e-42 176.4 265 45.7
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.6e-41 174.1 109 77.1
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 3.5e-41 172.9 103 83.5
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 3.0e-40 169.9 108 78.7
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 4.3e-39 166.0 135 65.2
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.4e-37 161.0 92 84.8
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 9.3e-34 148.3 190 47.4
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.5e-31 141.0 81 84.0
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 3.3e-31 139.8 100 72.0
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 8.4e-27 125.2 83 72.3
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 7.8e-25 118.6 111 60.4
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 3.1e-21 106.7 64 82.8
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 4.0e-13 79.7 81 54.3
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 1.1e-10 71.6 56 67.9
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 5.5e-10 69.3 59 59.3
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 1.0e-08 65.1 62 59.7
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 1.0e-08 65.1 35 82.9
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 9.6e-07 58.5 44 68.2
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 2.1e-06 57.4 47 66.0


User provided reference genes

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