Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 0.0e+00 1427.2 713 100.0
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 6.6e-259 897.5 721 65.9
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 2.0e-247 859.4 724 63.4
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 6.9e-240 834.3 715 62.7
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 6.9e-240 834.3 719 61.6
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 9.0e-240 833.9 722 62.3
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 1.3e-235 820.1 735 61.9
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 2.3e-235 819.3 729 61.3
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 8.7e-235 817.4 718 60.9
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 1.9e-234 816.2 729 61.6
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 4.3e-234 815.1 740 60.8
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 5.6e-234 814.7 706 62.9
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 1.4e-232 810.1 741 60.6
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 1.4e-232 810.1 718 60.3
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 2.4e-232 809.3 718 60.7
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 3.1e-232 808.9 721 59.9
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 1.5e-231 806.6 735 60.3
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 3.4e-231 805.4 720 61.1
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 4.5e-231 805.1 742 59.8
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 2.4e-229 799.3 721 60.7
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 5.5e-229 798.1 713 61.7
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 1.2e-228 797.0 723 60.9
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 2.1e-228 796.2 712 60.7
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 1.3e-227 793.5 716 60.9
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 1.1e-226 790.4 716 60.8
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 2.5e-226 789.3 719 60.1
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 1.2e-223 780.4 727 59.6
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 1.5e-223 780.0 723 59.5
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.8e-222 775.4 717 59.4
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 3.8e-222 775.4 767 57.0
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 4.9e-222 775.0 717 59.4
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 1.9e-221 773.1 697 61.1
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 4.2e-221 771.9 718 57.4
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 4.2e-221 771.9 719 58.8
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 3.5e-220 768.8 717 59.1
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 3.5e-220 768.8 697 61.0
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 1.0e-219 767.3 697 60.7
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 1.5e-218 763.5 721 58.5
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 1.9e-218 763.1 738 55.7
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 4.3e-218 761.9 730 58.9
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 5.7e-218 761.5 704 60.8
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 2.8e-217 759.2 718 57.2
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 2.4e-216 756.1 726 57.0
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 1.2e-215 753.8 726 57.4
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 2.6e-215 752.7 816 53.2
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 1.9e-213 746.5 722 57.6
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 3.2e-213 745.7 687 59.4
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 4.2e-213 745.3 719 57.3
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 1.2e-212 743.8 682 57.9
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 4.6e-212 741.9 718 57.8
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 3.1e-208 729.2 719 55.9
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 6.9e-208 728.0 710 57.7
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 1.2e-207 727.2 735 56.5
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 1.5e-207 726.9 735 56.5
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 1.9e-205 719.9 737 56.3
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 9.4e-205 717.6 731 55.7
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 6.1e-204 714.9 735 55.5
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 7.9e-204 714.5 721 56.3
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 3.9e-203 712.2 688 57.3
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 5.1e-203 711.8 718 56.0
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 5.1e-203 711.8 728 55.2
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 4.3e-202 708.8 709 54.7
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 5.7e-202 708.4 738 55.4
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 4.8e-201 705.3 721 55.1
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 1.1e-200 704.1 691 55.9
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 3.1e-200 702.6 660 59.2
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 1.2e-199 700.7 747 53.8
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 4.5e-199 698.7 676 57.8
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 4.2e-197 692.2 725 55.3
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 4.2e-197 692.2 703 54.6
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 2.7e-196 689.5 698 54.7
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 1.0e-195 687.6 711 54.6
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 1.0e-195 687.6 731 55.0
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 8.8e-195 684.5 704 54.8
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 1.1e-194 684.1 728 55.1
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 4.4e-194 682.2 716 55.0
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 2.8e-193 679.5 710 55.2
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 4.5e-191 672.2 701 53.9
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 2.9e-190 669.5 717 53.1
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 1.2e-186 657.5 809 49.3
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 1.7e-185 653.7 711 53.4
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 1.3e-182 644.0 693 53.4
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 3.8e-182 642.5 693 52.4
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.4e-179 634.0 703 51.4
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 8.8e-179 631.3 694 52.3
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 2.0e-178 630.2 695 52.8
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 7.5e-178 628.2 705 51.8
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 4.8e-177 625.5 694 52.2
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 1.4e-176 624.0 625 55.0
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 1.8e-171 607.1 705 51.5
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 1.5e-170 604.0 696 51.3
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 1.5e-170 604.0 696 51.3
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.5e-170 604.0 697 51.6
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 4.4e-170 602.4 497 66.0
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 1.3e-169 600.9 697 51.6
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 3.5e-167 592.8 694 50.7
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 2.0e-130 470.7 546 52.6
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.6e-124 451.1 781 39.4
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 4.8e-124 449.5 768 39.7
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 5.8e-122 442.6 790 38.5
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.6e-119 434.5 419 57.3
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.8e-116 423.7 370 63.2
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 6.0e-111 406.0 452 54.0
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 3.3e-101 373.6 469 48.2
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 2.0e-98 364.4 480 45.4
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 3.2e-96 357.1 717 36.8
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.4e-91 340.9 274 64.6
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 9.1e-91 339.0 546 42.1
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 9.1e-91 339.0 546 42.1
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 8.8e-86 322.4 214 75.2
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.2e-84 317.8 261 61.3
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 1.3e-68 265.4 233 58.8
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 3.5e-66 257.3 260 53.5
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.4e-59 234.6 272 53.3
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 1.7e-57 228.4 264 48.9
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 6.6e-49 199.9 117 76.9
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.0e-46 190.7 208 47.6
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 1.5e-45 188.7 216 46.3
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 3.5e-42 177.6 242 40.9
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 2.3e-30 138.3 270 32.2
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 5.8e-21 107.1 63 81.0
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 8.7e-17 93.2 234 34.2
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 2.8e-15 88.2 210 27.6
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 4.7e-15 87.4 84 56.0
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 9.3e-11 73.2 56 62.5
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 2.1e-10 72.0 59 57.6
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 7.8e-10 70.1 33 87.9
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-09 68.9 79 50.6
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 68.2 53 66.0
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 68.2 53 66.0
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 68.2 53 66.0
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 68.2 53 66.0
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 68.2 53 66.0
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 68.2 53 66.0
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 68.2 53 66.0
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 68.2 53 66.0
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 68.2 53 66.0
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 68.2 53 66.0
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.9e-09 67.8 53 66.0


User provided reference genes

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