Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002092 Vanilla planifolia HOM05D000637 ORTHO05D037826 4.8e-85 317.8 160 100.0
HPP92_002071 Vanilla planifolia HOM05D000637 ORTHO05D037826 1.7e-37 159.8 97 82.5
HPP92_002087 Vanilla planifolia HOM05D000637 ORTHO05D037826 5.8e-22 108.2 70 81.4
ClCG01G003690 Citrullus lanatus HOM05D000637 ORTHO05D003362 1.3e-10 70.5 77 46.8
DCAR_000853 Daucus carota HOM05D000637 ORTHO05D003362 3.0e-10 69.3 81 40.7
Aqoxy7G00672 Aquilegia oxysepala HOM05D000637 ORTHO05D003362 3.9e-10 68.9 62 54.8
MSTRG.12066 Avicennia marina HOM05D000637 ORTHO05D003362 3.9e-10 68.9 64 54.7
CsaV3_5G003800 Cucumis sativus L. HOM05D000637 ORTHO05D003362 3.9e-10 68.9 77 46.8
THA.LOC104813836 Tarenaya hassleriana HOM05D000637 ORTHO05D003362 3.9e-10 68.9 106 41.5
MELO3C005577.2 Cucumis melo HOM05D000637 ORTHO05D003362 1.1e-09 67.4 77 45.5
Sed0000044 Sechium edule HOM05D000637 ORTHO05D003362 1.1e-09 67.4 59 55.9
Haze_08606 Corylus avellana HOM05D000637 ORTHO05D003362 1.5e-09 67.0 59 55.9
EL10Ac5g12974 Beta vulgaris HOM05D000637 ORTHO05D003362 1.9e-09 66.6 64 46.9
CiPaw.11G148200 Carya illinoinensis HOM05D000637 ORTHO05D003362 1.9e-09 66.6 48 62.5
Os04g0269600 Oryza sativa ssp. japonica HOM05D000637 ORTHO05D003362 1.9e-09 66.6 45 66.7
vmacro00228 Vaccinium macrocarpon HOM05D000637 ORTHO05D003362 1.9e-09 66.6 44 68.2
EL10Ac5g12982 Beta vulgaris HOM05D000637 ORTHO05D003362 3.3e-09 65.9 70 50.0
HanXRQChr13g0417281 Helianthus annuus HOM05D000637 ORTHO05D003362 3.3e-09 65.9 69 46.4
PGR031G2139 Punica granatum HOM05D000637 ORTHO05D003362 3.3e-09 65.9 67 49.3
Actinidia02094 Actinidia chinensis HOM05D000637 ORTHO05D003362 4.3e-09 65.5 62 51.6
CSS0008065 Camellia sinensis var. sinensis HOM05D000637 ORTHO05D003362 4.3e-09 65.5 57 54.4
CSS0042729 Camellia sinensis var. sinensis HOM05D000637 ORTHO05D003362 4.3e-09 65.5 57 54.4
Cpa.g.sc1695.1 Carica papaya HOM05D000637 ORTHO05D003362 4.3e-09 65.5 78 43.6
COL.COLO4_23886 Corchorus olitorius HOM05D000637 ORTHO05D003362 4.3e-09 65.5 44 65.9
Migut.O00615 Erythranthe guttata HOM05D000637 ORTHO05D003362 4.3e-09 65.5 59 55.9
MD02G1257400 Malus domestica HOM05D000637 ORTHO05D003362 4.3e-09 65.5 48 62.5
SGA_v2.0_scaffold120G32827 Striga asiatica HOM05D000637 ORTHO05D003362 4.3e-09 65.5 59 55.9
Zm00001eb420190 Zea mays HOM05D000637 ORTHO05D003362 4.3e-09 65.5 44 63.6
Atru.chr9.1421 Acer truncatum HOM05D000637 ORTHO05D003362 5.7e-09 65.1 48 62.5
Atru.chr9.1425 Acer truncatum HOM05D000637 ORTHO05D003362 5.7e-09 65.1 69 46.4
CAN.G1903.2 Capsicum annuum HOM05D000637 ORTHO05D003362 5.7e-09 65.1 59 52.5
Cpa.g.sc29.99 Carica papaya HOM05D000637 ORTHO05D003362 5.7e-09 65.1 44 68.2
FvH4_5g00610 Fragaria vesca HOM05D000637 ORTHO05D003362 5.7e-09 65.1 48 60.4
FAN04G1459 Fragaria x ananassa HOM05D000637 ORTHO05D003362 5.7e-09 65.1 48 60.4
Nn1g01132 Nelumbo nucifera HOM05D000637 ORTHO05D003362 5.7e-09 65.1 85 42.4
PSO782G1117 Papaver somniferum HOM05D000637 ORTHO05D003362 5.7e-09 65.1 78 44.9
TAR629G2110 Trochodendron aralioides HOM05D000637 ORTHO05D003362 5.7e-09 65.1 85 40.0
PSO478G2045 Papaver somniferum HOM05D000637 ORTHO05D003362 7.4e-09 64.7 78 44.9
CiPaw.16G077200 Carya illinoinensis HOM05D000637 ORTHO05D003362 9.7e-09 64.3 48 60.4
Gohir.A08G173400 Gossypium hirsutum HOM05D000637 ORTHO05D003362 9.7e-09 64.3 44 65.9
Gohir.D08G192100 Gossypium hirsutum HOM05D000637 ORTHO05D003362 9.7e-09 64.3 44 65.9
Gorai.004G202100 Gossypium raimondii HOM05D000637 ORTHO05D003362 9.7e-09 64.3 44 65.9
HanXRQChr13g0417311 Helianthus annuus HOM05D000637 ORTHO05D003362 9.7e-09 64.3 48 60.4
Rhsim04G0085600 Rhododendron simsii HOM05D000637 ORTHO05D003362 9.7e-09 64.3 44 65.9
RcHm_v2.0_Chr7g0201651 Rosa chinensis HOM05D000637 ORTHO05D003362 9.7e-09 64.3 48 60.4
TWI15G0068 Tripterygium wilfordii HOM05D000637 ORTHO05D003362 9.7e-09 64.3 44 65.9
CANSAT21G2071 Cannabis sativa HOM05D000637 ORTHO05D003362 1.3e-08 63.9 48 62.5
Dinv21576 Davidia involucrata HOM05D000637 ORTHO05D003362 1.3e-08 63.9 44 65.9
Duzib084G0338 Durio zibethinus HOM05D000637 ORTHO05D003362 1.3e-08 63.9 44 65.9
Hma1.2p1_1290F.1_g273480 Hydrangea macrophylla HOM05D000637 ORTHO05D003362 1.3e-08 63.9 44 63.6
Lsat_1_v5_gn_6_90041 Lactuca sativa HOM05D000637 ORTHO05D003362 1.3e-08 63.9 48 60.4
Manes.01G074100 Manihot esculenta HOM05D000637 ORTHO05D003362 1.3e-08 63.9 48 60.4
Potri.001G118200 Populus trichocarpa HOM05D000637 ORTHO05D003362 1.3e-08 63.9 66 50.0
Sabra01G0091000 Salix brachista HOM05D000637 ORTHO05D003362 1.3e-08 63.9 62 53.2
SalBow6G0759 Salvia bowleyana HOM05D000637 ORTHO05D003362 1.3e-08 63.9 44 63.6
Thecc.03G261000 Theobroma cacao HOM05D000637 ORTHO05D003362 1.3e-08 63.9 44 65.9
CDE12G0488 Ceratophyllum demersum HOM05D000637 ORTHO05D003362 1.6e-08 63.5 82 41.5
Cc00_g30450 Coffea canephora HOM05D000637 ORTHO05D003362 1.6e-08 63.5 44 63.6
MBI04_g44164_MAGBIO Magnolia biondii HOM05D000637 ORTHO05D003362 1.6e-08 63.5 49 57.1
Potri.001G118300 Populus trichocarpa HOM05D000637 ORTHO05D003362 1.6e-08 63.5 62 53.2
SEGI_16219 Sequoiadendron giganteum HOM05D000637 ORTHO05D003362 1.6e-08 63.5 64 50.0
Dinv39086 Davidia involucrata HOM05D000637 ORTHO05D003362 2.2e-08 63.2 66 47.0
Dinv39087 Davidia involucrata HOM05D000637 ORTHO05D003362 2.2e-08 63.2 44 63.6
ECA240G3662 Erigeron canadensis HOM05D000637 ORTHO05D003362 2.2e-08 63.2 44 63.6
QL12p014851 Quercus lobata HOM05D000637 ORTHO05D003362 2.2e-08 63.2 59 54.2
EL10Ac5g12976 Beta vulgaris HOM05D000637 ORTHO05D003362 2.8e-08 62.8 67 43.3
Ciclev10019032m.g Citrus clementina HOM05D000637 ORTHO05D003362 2.8e-08 62.8 44 63.6
ECA240G3228 Erigeron canadensis HOM05D000637 ORTHO05D003362 2.8e-08 62.8 43 58.1
Nitab4.5_0004153g0040 Nicotiana tabacum HOM05D000637 ORTHO05D003362 2.8e-08 62.8 59 50.8
Sabra01G0090900 Salix brachista HOM05D000637 ORTHO05D003362 2.8e-08 62.8 43 62.8
ATR0757G089 Amborella trichopoda HOM05D000637 ORTHO05D003362 3.7e-08 62.4 77 44.2
Nitab4.5_0006822g0040 Nicotiana tabacum HOM05D000637 ORTHO05D003362 3.7e-08 62.4 59 50.8
Prupe.5G078900 Prunus persica HOM05D000637 ORTHO05D003362 3.7e-08 62.4 44 63.6
Manes.02G034000 Manihot esculenta HOM05D000637 ORTHO05D003362 4.8e-08 62.0 62 50.0
Rhsim04G0193500 Rhododendron simsii HOM05D001159 ORTHO05D009291 4.8e-08 62.0 43 60.5
Hund14637 Selenicereus undatus HOM05D000637 ORTHO05D003362 4.8e-08 62.0 70 48.6
TWI81G0314 Tripterygium wilfordii HOM05D000637 ORTHO05D003362 4.8e-08 62.0 43 58.1
AUR62027289 Chenopodium quinoa HOM05D000637 ORTHO05D003362 6.3e-08 61.6 44 56.8
Lsat_1_v5_gn_6_89561 Lactuca sativa HOM05D000637 ORTHO05D003362 6.3e-08 61.6 43 60.5
Peaxi162Scf00002g00017 Petunia axillaris HOM05D000637 ORTHO05D003362 6.3e-08 61.6 69 43.5
Sp2g01790 Schrenkiella parvula HOM05D000637 ORTHO05D003362 6.3e-08 61.6 113 32.7
AL6G47120 Arabidopsis lyrata HOM05D000637 ORTHO05D003362 8.2e-08 61.2 93 37.6
AUR62007449 Chenopodium quinoa HOM05D000637 ORTHO05D003362 8.2e-08 61.2 70 44.3
AUR62027285 Chenopodium quinoa HOM05D000637 ORTHO05D003362 8.2e-08 61.2 70 44.3
HanXRQChr13g0417301 Helianthus annuus HOM05D000637 ORTHO05D003362 1.1e-07 60.8 64 46.9
Sc07g0009410 Simmondsia chinensis HOM05D000637 ORTHO05D003362 1.1e-07 60.8 59 47.5
Sopen08g027800 Solanum pennellii HOM05D000637 ORTHO05D003362 1.1e-07 60.8 57 47.4
Nitab4.5_0011759g0010 Nicotiana tabacum HOM05D000637 ORTHO05D003362 1.4e-07 60.5 64 43.8
Phvul.005G023500 Phaseolus vulgaris HOM05D000637 ORTHO05D003362 1.4e-07 60.5 60 53.3
Sp6g05290 Schrenkiella parvula HOM05D000637 ORTHO05D003362 1.4e-07 60.5 83 41.0
PGSC0003DMG400003936 Solanum tuberosum HOM05D000637 ORTHO05D003362 1.4e-07 60.5 44 59.1
PGSC0003DMG400019077 Solanum tuberosum HOM05D000637 ORTHO05D003362 1.4e-07 60.5 44 59.1
unitig_22.g5488 Utricularia gibba HOM05D000637 ORTHO05D003362 1.4e-07 60.5 59 54.2
Gohir.D03G157766 Gossypium hirsutum HOM05D000637 ORTHO05D003362 1.8e-07 60.1 82 40.2
MBI04_g44992_MAGBIO Magnolia biondii HOM05D000637 ORTHO05D003362 1.8e-07 60.1 41 63.4
Ah.02g117230 Amaranthus hybridus HOM05D000637 ORTHO05D003362 2.4e-07 59.7 67 46.3
BcaB05g23756 Brassica carinata HOM05D000637 ORTHO05D003362 2.4e-07 59.7 44 59.1
Gorai.003G165900 Gossypium raimondii HOM05D000637 ORTHO05D003362 2.4e-07 59.7 44 59.1
PGR031G2882 Punica granatum HOM05D000637 ORTHO05D003362 2.4e-07 59.7 64 48.4
Glyma.15G276400 Glycine max HOM05D000637 ORTHO05D003362 3.1e-07 59.3 44 63.6
VMungo1080G1075 Vigna mungo HOM05D000637 ORTHO05D003362 3.1e-07 59.3 65 52.3
COL.COLO4_23885 Corchorus olitorius HOM05D000637 ORTHO05D003362 4.1e-07 58.9 43 60.5
Thhalv10028460m.g Eutrema salsugineum HOM05D000637 ORTHO05D003362 4.1e-07 58.9 44 56.8
Peaxi162Scf00002g00001 Petunia axillaris HOM05D000637 ORTHO05D003362 4.1e-07 58.9 64 43.8
TPR.G29037 Trifolium pratense HOM05D000637 ORTHO05D003362 4.1e-07 58.9 44 63.6
VMungo1080G0445 Vigna mungo HOM05D000637 ORTHO05D003362 4.1e-07 58.9 44 63.6
Aa31LG9G10290 Aethionema arabicum HOM05D000637 ORTHO05D003362 5.3e-07 58.5 44 54.5
AT4G12290 Arabidopsis thaliana HOM05D000637 ORTHO05D003362 5.3e-07 58.5 44 59.1
CDE11G0508 Ceratophyllum demersum HOM05D000637 ORTHO05D003362 5.3e-07 58.5 43 60.5
Thhalv10023306m.g Eutrema salsugineum HOM05D000637 ORTHO05D003362 5.3e-07 58.5 65 46.2
Gorai.003G166200 Gossypium raimondii HOM05D000637 ORTHO05D003362 5.3e-07 58.5 62 46.8
Medtr3g080500 Medicago truncatula HOM05D000637 ORTHO05D003362 5.3e-07 58.5 42 64.3
SGA_v2.0_scaffold120G32823 Striga asiatica HOM05D000637 ORTHO05D003362 5.3e-07 58.5 44 52.3
Aqoxy7G00671 Aquilegia oxysepala HOM05D000637 ORTHO05D003362 6.9e-07 58.2 41 61.0
BcaC01g01398 Brassica carinata HOM05D000637 ORTHO05D003362 6.9e-07 58.2 65 46.2
BcaC03g16298 Brassica carinata HOM05D000637 ORTHO05D003362 6.9e-07 58.2 44 56.8
A02p25750 Brassica napus HOM05D000637 ORTHO05D003362 6.9e-07 58.2 44 56.8
A03p68090 Brassica napus HOM05D000637 ORTHO05D003362 6.9e-07 58.2 65 46.2
C03p91600 Brassica napus HOM05D000637 ORTHO05D003362 6.9e-07 58.2 65 46.2
BolC2t10114H Brassica oleracea HOM05D000637 ORTHO05D003362 6.9e-07 58.2 44 56.8
BolC3t21478H Brassica oleracea HOM05D000637 ORTHO05D003362 6.9e-07 58.2 65 46.2
BraA01t02661Z Brassica rapa HOM05D000637 ORTHO05D003362 6.9e-07 58.2 65 46.2
BraA02t07567Z Brassica rapa HOM05D000637 ORTHO05D003362 6.9e-07 58.2 44 56.8
ClCG01G003680 Citrullus lanatus HOM05D000637 ORTHO05D003362 6.9e-07 58.2 87 37.9
Psat5g111360 Pisum sativum HOM05D000637 ORTHO05D003362 6.9e-07 58.2 42 64.3
THA.LOC104818423 Tarenaya hassleriana HOM05D000637 ORTHO05D003362 6.9e-07 58.2 64 46.9
Carub.0002s0217 Capsella rubella HOM05D000637 ORTHO05D003362 9.0e-07 57.8 113 32.7
SalBow6G0161 Salvia bowleyana HOM05D000637 ORTHO05D003362 9.0e-07 57.8 62 41.9
SEGI_35637 Sequoiadendron giganteum HOM05D000637 ORTHO05D003362 9.0e-07 57.8 62 48.4
DCAR_006805 Daucus carota HOM05D000637 ORTHO05D003362 1.2e-06 57.4 64 46.9
Psat6g207200 Pisum sativum HOM05D000637 ORTHO05D001881 1.2e-06 57.4 103 33.0
AT4G12270 Arabidopsis thaliana HOM05D000637 ORTHO05D003362 1.5e-06 57.0 47 53.2
MSTRG.25545 Avicennia marina HOM05D000637 ORTHO05D003362 1.5e-06 57.0 77 37.7
Ca_16287_v3 Cicer arietinum L. HOM05D000637 ORTHO05D003362 1.5e-06 57.0 60 51.7
Sed0025685 Sechium edule HOM05D000637 ORTHO05D003362 1.5e-06 57.0 69 39.1
Aqoxy7G00670 Aquilegia oxysepala HOM05D000637 ORTHO05D003362 2.0e-06 56.6 41 58.5
arahy.Tifrunner.gnm1.ann1.TUB397 Arachis hypogaea HOM05D000637 ORTHO05D003362 2.0e-06 56.6 44 61.4
MSTRG.12065 Avicennia marina HOM05D000637 ORTHO05D003362 2.0e-06 56.6 44 50.0
BcaC06g31914 Brassica carinata HOM05D000637 ORTHO05D003362 2.0e-06 56.6 41 56.1
CsaV3_5G003790 Cucumis sativus L. HOM05D000637 ORTHO05D003362 2.0e-06 56.6 76 39.5
CANSAT21G1931 Cannabis sativa HOM05D000637 ORTHO05D003362 3.4e-06 55.8 69 40.6
CARHR151440 Cardamine hirsuta HOM05D000637 ORTHO05D003362 3.4e-06 55.8 65 46.2
MELO3C005578.2 Cucumis melo HOM05D000637 ORTHO05D003362 3.4e-06 55.8 57 47.4
FAN08G1366 Fragaria x ananassa HOM05D000637 ORTHO05D003362 3.4e-06 55.8 60 51.7
Lj3A733G41 Lonicera japonica HOM05D000637 ORTHO05D003362 3.4e-06 55.8 46 58.7
Lj5g0028221 Lotus japonicus HOM05D000637 ORTHO05D003362 3.4e-06 55.8 60 50.0
Lalb_Chr23g0275531 Lupinus albus HOM05D000637 ORTHO05D003362 3.4e-06 55.8 44 61.4
Nn4g26359 Nelumbo nucifera HOM05D000637 ORTHO05D003362 3.4e-06 55.8 43 55.8
Oeu034502.1 Olea europaea HOM05D000637 ORTHO05D003362 3.4e-06 55.8 44 52.3
C02p41060 Brassica napus HOM05D000637 ORTHO05D003362 4.5e-06 55.5 44 54.5
FAN18G2074 Fragaria x ananassa HOM05D000637 ORTHO05D003362 4.5e-06 55.5 49 57.1
RcHm_v2.0_Chr7g0201661 Rosa chinensis HOM05D000637 ORTHO05D003362 4.5e-06 55.5 60 51.7
CARHR049020 Cardamine hirsuta HOM05D000637 ORTHO05D003362 5.9e-06 55.1 113 30.1
Solyc08g079430.3 Solanum lycopersicum HOM05D000637 ORTHO05D003362 5.9e-06 55.1 57 45.6
Carub.0006s3140 Capsella rubella HOM05D000637 ORTHO05D003362 7.7e-06 54.7 44 56.8
CARHR253960 Cardamine hirsuta HOM05D000637 ORTHO05D003362 7.7e-06 54.7 60 45.0
PSO478G0297 Papaver somniferum HOM05D000637 ORTHO05D003362 7.7e-06 54.7 41 53.7
PSO782G0453 Papaver somniferum HOM05D000637 ORTHO05D003362 7.7e-06 54.7 41 53.7
arahy.Tifrunner.gnm1.ann1.SN8RBH Arachis hypogaea HOM05D000637 ORTHO05D003362 1.0e-05 54.3 44 61.4
BcaB05g23759 Brassica carinata HOM05D000637 ORTHO05D003362 1.0e-05 54.3 44 54.5
BcaC03g16299 Brassica carinata HOM05D000637 ORTHO05D003362 1.0e-05 54.3 44 54.5
BolC2t10118H Brassica oleracea HOM05D000637 ORTHO05D003362 1.0e-05 54.3 44 54.5
PSO455G0265 Papaver somniferum HOM05D000637 ORTHO05D003362 1.0e-05 54.3 41 53.7


User provided reference genes

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