Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002068 Vanilla planifolia HOM05D000083 ORTHO05D431182 1.0e-67 260.0 136 100.0
HPP92_002093 Vanilla planifolia HOM05D000083 ORTHO05D003582 6.9e-32 141.0 93 79.6
HPP92_002089 Vanilla planifolia HOM05D000083 ORTHO05D003582 1.6e-25 119.8 93 72.0
SalBow6G1016 Salvia bowleyana HOM05D000083 ORTHO05D003582 1.2e-15 87.0 82 56.1
GSVIVG01012031001 Vitis vinifera HOM05D000083 ORTHO05D003582 7.7e-15 84.3 78 52.6
ATR0326G043 Amborella trichopoda HOM05D000083 ORTHO05D003582 1.7e-14 83.2 79 59.5
Lj3C850G18 Lonicera japonica HOM05D000083 ORTHO05D003582 2.2e-14 82.8 83 55.4
CiPaw.04G139600 Carya illinoinensis HOM05D000083 ORTHO05D003582 3.8e-14 82.0 101 46.5
ClCG10G011890 Citrullus lanatus HOM05D000083 ORTHO05D003582 3.8e-14 82.0 80 55.0
Os04g0660500 Oryza sativa ssp. japonica HOM05D000083 ORTHO05D003582 5.0e-14 81.6 97 49.5
TAR629G3380 Trochodendron aralioides HOM05D000083 ORTHO05D003582 6.5e-14 81.3 79 54.4
MSTRG.2055 Avicennia marina HOM05D000083 ORTHO05D003582 1.1e-13 80.5 83 53.0
Manes.11G101900 Manihot esculenta HOM05D000083 ORTHO05D003582 1.4e-13 80.1 80 53.8
SGA_v2.0_scaffold99G29461 Striga asiatica HOM05D000083 ORTHO05D003582 1.4e-13 80.1 83 53.0
Sed0020503 Sechium edule HOM05D000083 ORTHO05D003582 1.9e-13 79.7 79 50.6
TAR371G0617 Trochodendron aralioides HOM05D000083 ORTHO05D003582 1.9e-13 79.7 79 53.2
Duzib248G1611 Durio zibethinus HOM05D000083 ORTHO05D003582 2.5e-13 79.3 80 51.2
TPR.G32329 Trifolium pratense HOM05D000083 ORTHO05D003582 2.5e-13 79.3 98 46.9
CsaV3_3G031470 Cucumis sativus L. HOM05D000083 ORTHO05D003582 3.2e-13 79.0 80 52.5
Hma1.2p1_0499F.1_g166780 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 3.2e-13 79.0 83 54.2
Medtr4g074875 Medicago truncatula HOM05D000083 ORTHO05D003582 3.2e-13 79.0 98 46.9
Medtr4g075410 Medicago truncatula HOM05D000083 ORTHO05D003582 3.2e-13 79.0 98 46.9
Sabra07G0058700 Salix brachista HOM05D000083 ORTHO05D003582 3.2e-13 79.0 101 45.5
TWI53G2094 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 3.2e-13 79.0 101 43.6
Haze_11721 Corylus avellana HOM05D000083 ORTHO05D003582 4.2e-13 78.6 80 53.8
Nn7g37822 Nelumbo nucifera HOM05D000083 ORTHO05D003582 4.2e-13 78.6 94 47.9
MELO3C024030.2 Cucumis melo HOM05D000083 ORTHO05D003582 5.5e-13 78.2 80 52.5
Actinidia04074 Actinidia chinensis HOM05D000083 ORTHO05D003582 7.2e-13 77.8 79 53.2
Ca_19030_v3 Cicer arietinum L. HOM05D000083 ORTHO05D003582 7.2e-13 77.8 98 45.9
Lj3g0012190 Lotus japonicus HOM05D000083 ORTHO05D003582 9.4e-13 77.4 77 54.5
Oeu027907.6 Olea europaea HOM05D000083 ORTHO05D003582 9.4e-13 77.4 100 45.0
Phvul.011G030800 Phaseolus vulgaris HOM05D000083 ORTHO05D003582 9.4e-13 77.4 98 45.9
VMungo1383G1323 Vigna mungo HOM05D000083 ORTHO05D003582 9.4e-13 77.4 103 45.6
Lalb_Chr03g0024821 Lupinus albus HOM05D000083 ORTHO05D003582 1.2e-12 77.0 83 51.8
Psat7g176440 Pisum sativum HOM05D000083 ORTHO05D003582 1.2e-12 77.0 98 46.9
Ciclev10030510m.g Citrus clementina HOM05D000083 ORTHO05D003582 1.6e-12 76.6 81 48.1
DCAR_030398 Daucus carota HOM05D000083 ORTHO05D003582 1.6e-12 76.6 83 51.8
Glyma.11G101700 Glycine max HOM05D000083 ORTHO05D003582 1.6e-12 76.6 77 53.2
Glyma.12G027600 Glycine max HOM05D000083 ORTHO05D003582 1.6e-12 76.6 77 54.5
PGR044G0594 Punica granatum HOM05D000083 ORTHO05D003582 1.6e-12 76.6 101 44.6
TWI74G1512 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 1.6e-12 76.6 86 47.7
Prupe.1G346000 Prunus persica HOM05D000083 ORTHO05D003582 2.1e-12 76.3 81 50.6
Dinv11712 Davidia involucrata HOM05D000083 ORTHO05D003582 2.7e-12 75.9 83 51.8
MD16G1000900 Malus domestica HOM05D000083 ORTHO05D003582 2.7e-12 75.9 81 49.4
Atru.chr11.1178 Acer truncatum HOM05D000083 ORTHO05D003582 3.6e-12 75.5 106 42.5
AUR62015218 Chenopodium quinoa HOM05D000083 ORTHO05D003582 3.6e-12 75.5 80 50.0
AUR62017682 Chenopodium quinoa HOM05D000083 ORTHO05D003582 3.6e-12 75.5 80 50.0
Gohir.A01G013000 Gossypium hirsutum HOM05D000083 ORTHO05D003582 3.6e-12 75.5 101 43.6
Gohir.D01G014300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 3.6e-12 75.5 101 43.6
MD13G1006900 Malus domestica HOM05D000083 ORTHO05D003582 3.6e-12 75.5 81 49.4
Potri.007G070100 Populus trichocarpa HOM05D000083 ORTHO05D003582 3.6e-12 75.5 101 44.6
Aqoxy7G03614 Aquilegia oxysepala HOM05D000083 ORTHO05D003582 4.7e-12 75.1 80 52.5
Eucgr.J00858 Eucalyptus grandis HOM05D000083 ORTHO05D003582 4.7e-12 75.1 106 43.4
Gorai.002G016000 Gossypium raimondii HOM05D000083 ORTHO05D003582 4.7e-12 75.1 101 44.6
Sed0024928 Sechium edule HOM05D000083 ORTHO05D003582 6.1e-12 74.7 77 50.6
Aa31LG10G1090 Aethionema arabicum HOM05D000083 ORTHO05D003582 7.9e-12 74.3 101 41.6
Aa31LG8G730 Aethionema arabicum HOM05D000083 ORTHO05D003582 7.9e-12 74.3 101 41.6
Ah.01g012890 Amaranthus hybridus HOM05D000083 ORTHO05D003582 7.9e-12 74.3 80 51.2
Sabra07G0058200 Salix brachista HOM05D000083 ORTHO05D003582 7.9e-12 74.3 101 43.6
CANSAT64G2172 Cannabis sativa HOM05D000083 ORTHO05D003582 1.0e-11 73.9 77 51.9
Cpa.g.sc119.48 Carica papaya HOM05D000083 ORTHO05D003582 1.0e-11 73.9 80 50.0
Gohir.D12G137900 Gossypium hirsutum HOM05D000083 ORTHO05D003582 1.0e-11 73.9 101 41.6
Gorai.008G149400 Gossypium raimondii HOM05D000083 ORTHO05D003582 1.0e-11 73.9 101 41.6
Peaxi162Scf01172g00034 Petunia axillaris HOM05D000083 ORTHO05D003582 1.4e-11 73.6 79 50.6
FvH4_4g36790 Fragaria vesca HOM05D000083 ORTHO05D003582 1.8e-11 73.2 81 49.4
FAN07G1039 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.8e-11 73.2 81 49.4
FAN12G3263 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.8e-11 73.2 81 49.4
FAN17G2779 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.8e-11 73.2 81 48.1
Gorai.005G210100 Gossypium raimondii HOM05D000083 ORTHO05D003582 1.8e-11 73.2 102 41.2
Peaxi162Scf00363g00731 Petunia axillaris HOM05D000083 ORTHO05D003582 1.8e-11 73.2 83 51.8
RcHm_v2.0_Chr4g0446521 Rosa chinensis HOM05D000083 ORTHO05D003582 1.8e-11 73.2 81 49.4
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 2.3e-11 72.8 80 48.8
Gohir.A12G134300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 2.3e-11 72.8 101 40.6
Lalb_Chr19g0139361 Lupinus albus HOM05D000083 ORTHO05D003582 2.3e-11 72.8 75 58.7
Thecc.02G160900 Theobroma cacao HOM05D000083 ORTHO05D003582 2.3e-11 72.8 101 42.6
Ah.01g001600 Amaranthus hybridus HOM05D000083 ORTHO05D003582 3.0e-11 72.4 80 48.8
ECA246G2960 Erigeron canadensis HOM05D000083 ORTHO05D003582 3.0e-11 72.4 75 52.0
Potri.005G094200 Populus trichocarpa HOM05D000083 ORTHO05D003582 3.0e-11 72.4 101 44.6
THA.LOC104822679 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 3.0e-11 72.4 101 41.6
Gohir.D02G187600 Gossypium hirsutum HOM05D000083 ORTHO05D003582 3.9e-11 72.0 102 40.2
Cc00_g03930 Coffea canephora HOM05D000083 ORTHO05D003582 5.1e-11 71.6 82 46.3
HanXRQChr06g0172001 Helianthus annuus HOM05D000083 ORTHO05D003582 5.1e-11 71.6 75 52.0
Gohir.A03G164300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 8.8e-11 70.9 81 46.9
AT3G13530 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 1.1e-10 70.5 101 40.6
CAN.G624.28 Capsicum annuum HOM05D000083 ORTHO05D003582 1.1e-10 70.5 79 49.4
Nitab4.5_0002113g0210 Nicotiana tabacum HOM05D000083 ORTHO05D003582 1.1e-10 70.5 79 49.4
Nitab4.5_0011898g0010 Nicotiana tabacum HOM05D000083 ORTHO05D003582 1.1e-10 70.5 79 49.4
Sp3g11740 Schrenkiella parvula HOM05D000083 ORTHO05D003582 1.1e-10 70.5 101 41.6
Solyc11g033270.2 Solanum lycopersicum HOM05D000083 ORTHO05D003582 1.1e-10 70.5 79 49.4
Sopen11g015750 Solanum pennellii HOM05D000083 ORTHO05D003582 1.1e-10 70.5 79 49.4
Zm00001eb067530 Zea mays HOM05D000083 ORTHO05D003582 1.1e-10 70.5 93 41.9
AL3G25440 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 1.5e-10 70.1 101 40.6
Carub.0003s0756 Capsella rubella HOM05D000083 ORTHO05D003582 1.5e-10 70.1 101 41.6
CARHR088200 Cardamine hirsuta HOM05D000083 ORTHO05D003582 1.5e-10 70.1 101 40.6
HanXRQChr17g0540841 Helianthus annuus HOM05D000083 ORTHO05D003582 1.5e-10 70.1 75 50.7
Lalb_Chr10g0095051 Lupinus albus HOM05D000083 ORTHO05D003582 1.5e-10 70.1 97 41.2
BcaB04g18769 Brassica carinata HOM05D000083 ORTHO05D003582 2.6e-10 69.3 101 40.6
A03p38250 Brassica napus HOM05D000083 ORTHO05D003582 2.6e-10 69.3 101 40.6
C03p46440 Brassica napus HOM05D000083 ORTHO05D003582 2.6e-10 69.3 101 40.6
BolC3t16908H Brassica oleracea HOM05D000083 ORTHO05D003582 2.6e-10 69.3 101 40.6
BraA03t12978Z Brassica rapa HOM05D000083 ORTHO05D003582 2.6e-10 69.3 101 40.6
Lsat_1_v5_gn_3_33541 Lactuca sativa HOM05D000083 ORTHO05D003582 2.6e-10 69.3 76 48.7
Sabra05G0078000 Salix brachista HOM05D000083 ORTHO05D003582 2.6e-10 69.3 101 43.6
Zm00001eb432730 Zea mays HOM05D000083 ORTHO05D003582 3.3e-10 68.9 93 39.8
arahy.Tifrunner.gnm1.ann1.FSDW2L Arachis hypogaea HOM05D000083 ORTHO05D003582 4.4e-10 68.6 77 48.1
arahy.Tifrunner.gnm1.ann1.ZIJB47 Arachis hypogaea HOM05D000083 ORTHO05D003582 4.4e-10 68.6 77 48.1
Carub.0003s1301 Capsella rubella HOM05D000083 ORTHO05D003582 4.4e-10 68.6 76 46.1
DCAR_004230 Daucus carota HOM05D000083 ORTHO05D003582 4.4e-10 68.6 100 39.0
Rhsim09G0073200 Rhododendron simsii HOM05D000083 ORTHO05D003582 4.4e-10 68.6 83 48.2
BcaC01g03989 Brassica carinata HOM05D000083 ORTHO05D003582 5.7e-10 68.2 101 39.6
CDE04G1078 Ceratophyllum demersum HOM05D000083 ORTHO05D003582 5.7e-10 68.2 63 46.0
Sc06g0007920 Simmondsia chinensis HOM05D000083 ORTHO05D003582 5.7e-10 68.2 77 45.5
Sp3g06890 Schrenkiella parvula HOM05D000083 ORTHO05D003582 2.2e-09 66.2 101 38.6
CARHR082720 Cardamine hirsuta HOM05D000083 ORTHO05D003582 6.3e-09 64.7 101 36.6
Thhalv10019902m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 6.3e-09 64.7 101 39.6
THA.LOC104810328 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 6.3e-09 64.7 101 38.6
DCAR_023443 Daucus carota HOM05D000083 ORTHO05D003582 2.4e-08 62.8 79 44.3
BcaB04g20987 Brassica carinata HOM05D000083 ORTHO05D003582 5.3e-08 61.6 72 43.1
C01p51560 Brassica napus HOM05D000083 ORTHO05D003582 5.3e-08 61.6 72 43.1
AL3G19360 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 7.0e-08 61.2 75 42.7
Hund24289 Selenicereus undatus HOM05D000083 ORTHO05D003582 7.0e-08 61.2 106 38.7
AT3G07980 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 9.1e-08 60.8 101 36.6
A01p40080 Brassica napus HOM05D000083 ORTHO05D003582 9.1e-08 60.8 72 41.7
PSO063G5474 Papaver somniferum HOM05D000083 ORTHO05D003582 9.1e-08 60.8 75 46.7
PSO782G1916 Papaver somniferum HOM05D000083 ORTHO05D003582 9.1e-08 60.8 75 46.7
A03p35590 Brassica napus HOM05D000083 ORTHO05D003582 1.2e-07 60.5 101 36.6
BraA03t12735Z Brassica rapa HOM05D000083 ORTHO05D003582 1.2e-07 60.5 101 36.6
C03p43230 Brassica napus HOM05D000083 ORTHO05D003582 2.6e-07 59.3 101 35.6
BolC3t16592H Brassica oleracea HOM05D000083 ORTHO05D003582 2.6e-07 59.3 101 35.6
BraA01t04049Z Brassica rapa HOM05D000083 ORTHO05D003582 2.6e-07 59.3 72 41.7
BcaB03g11558 Brassica carinata HOM05D000083 ORTHO05D003582 3.4e-07 58.9 101 35.6
BolC1t05099H Brassica oleracea HOM05D000083 ORTHO05D003582 5.9e-07 58.2 46 52.2
Migut.E00702 Erythranthe guttata HOM05D000083 ORTHO05D003582 1.0e-06 57.4 58 55.2
DCAR_026911 Daucus carota HOM05D000083 ORTHO05D003582 1.3e-06 57.0 67 44.8


User provided reference genes

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