Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 4.5e-60 234.6 134 100.0
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 4.9e-46 188.0 135 82.2
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 7.0e-45 184.1 136 83.1
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 5.9e-44 181.0 135 80.7
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 5.9e-44 181.0 136 80.9
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 1.0e-43 180.3 136 80.9
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 1.3e-43 179.9 135 80.7
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 2.9e-43 178.7 136 69.1
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 3.8e-43 178.3 134 72.4
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 3.8e-43 178.3 134 67.9
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 3.8e-43 178.3 134 67.9
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 5.0e-43 177.9 135 80.7
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 5.0e-43 177.9 135 80.0
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 5.0e-43 177.9 134 69.4
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 5.0e-43 177.9 134 67.9
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 6.6e-43 177.6 134 72.4
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 6.6e-43 177.6 134 77.6
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 6.6e-43 177.6 134 78.4
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 8.6e-43 177.2 133 79.7
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 1.1e-42 176.8 135 80.0
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 1.1e-42 176.8 135 79.3
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 2.5e-42 175.6 137 79.6
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 2.5e-42 175.6 137 78.1
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 3.3e-42 175.3 136 79.4
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 4.2e-42 174.9 137 69.3
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 4.2e-42 174.9 137 69.3
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 1.2e-41 173.3 139 76.3
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 1.6e-41 172.9 138 79.0
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 2.1e-41 172.6 136 66.9
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 2.8e-41 172.2 134 73.9
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 6.1e-41 171.0 138 75.4
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 6.1e-41 171.0 140 76.4
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 1.4e-40 169.9 139 77.0
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 1.4e-40 169.9 139 76.3
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 1.8e-40 169.5 136 65.4
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 1.8e-40 169.5 136 65.4
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 2.3e-40 169.1 139 76.3
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 2.3e-40 169.1 133 74.4
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 4.0e-40 168.3 139 64.7
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 6.8e-40 167.5 134 77.6
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 8.9e-40 167.2 137 72.3
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 1.5e-39 166.4 135 75.6
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 1.5e-39 166.4 137 64.2
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 2.6e-39 165.6 137 76.6
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 3.4e-39 165.2 135 76.3
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 7.5e-39 164.1 135 74.8
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 7.5e-39 164.1 135 75.6
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 7.5e-39 164.1 137 73.7
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 9.8e-39 163.7 132 64.4
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 9.8e-39 163.7 133 63.9
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.3e-38 163.3 137 73.0
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 1.7e-38 162.9 134 73.1
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 2.2e-38 162.5 136 62.5
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 2.2e-38 162.5 136 64.0
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 2.2e-38 162.5 140 74.3
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 2.9e-38 162.2 133 62.4
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 8.3e-38 160.6 141 62.4
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 1.8e-37 159.5 134 71.6
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 1.8e-37 159.5 134 71.6
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 2.4e-37 159.1 134 65.7
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 3.2e-37 158.7 140 72.1
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 4.1e-37 158.3 139 72.7
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 9.2e-37 157.1 133 72.2
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 1.2e-36 156.8 132 64.4
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 1.6e-36 156.4 137 60.6
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 2.0e-36 156.0 138 62.3
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 2.0e-36 156.0 133 62.4
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 2.7e-36 155.6 133 72.2
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 5.9e-36 154.5 137 60.6
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 5.9e-36 154.5 134 59.7
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 7.8e-36 154.1 134 59.7
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 7.8e-36 154.1 134 59.7
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 1.0e-35 153.7 136 60.3
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 1.0e-35 153.7 138 60.9
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.0e-35 153.7 138 60.9
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.0e-35 153.7 138 60.9
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.3e-35 153.3 138 60.9
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 2.3e-35 152.5 134 70.9
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 2.9e-35 152.1 131 70.2
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 5.0e-35 151.4 135 70.4
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 8.6e-35 150.6 134 70.1
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 1.1e-34 150.2 136 59.6
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 1.1e-34 150.2 136 59.6
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 2.5e-34 149.1 134 70.1
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 1.2e-33 146.7 137 69.3
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 1.2e-33 146.7 115 73.0
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 3.7e-30 135.2 140 55.0
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 4.9e-30 134.8 110 78.2
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 8.3e-30 134.0 151 51.0
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 1.9e-29 132.9 98 85.7
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 3.2e-29 132.1 134 56.0
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 1.9e-26 122.9 110 71.8
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 1.8e-24 116.3 134 51.5
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 3.1e-24 115.5 115 56.5
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 7.5e-23 110.9 95 64.2
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.1e-21 107.1 146 48.6
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 1.9e-21 106.3 138 50.0
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 2.4e-21 105.9 127 50.4
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 2.7e-20 102.4 115 61.7
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 3.5e-20 102.1 77 67.5
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 1.3e-19 100.1 117 43.6
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 6.6e-19 97.8 128 41.4
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 1.1e-18 97.1 117 59.8
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 1.9e-18 96.3 128 41.4
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 3.3e-18 95.5 127 37.0
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 3.3e-18 95.5 71 66.2
HanXRQChr10g0309751 Helianthus annuus HOM05D006738 ORTHO05D008191 1.2e-15 87.0 72 59.7
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.6e-15 85.9 136 42.6
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 2.2e-14 82.8 113 43.4
Oeu017736.2 Olea europaea HOM05D006738 ORTHO05D008191 4.9e-14 81.6 82 54.9
SHI08988 Sapria himalayana HOM05D006738 ORTHO05D008191 8.4e-14 80.9 73 58.9
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 3.2e-13 79.0 67 59.7
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 1.2e-12 77.0 70 58.6
Hma1.2p1_0935F.1_g238670 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 3.0e-11 72.4 49 73.5
Glyma.09G210500 Glycine max HOM05D006738 ORTHO05D008191 9.6e-10 67.4 71 52.1
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 4.4e-07 58.5 66 51.5


User provided reference genes

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