Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.6e-277 958.7 470 100.0
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 8.7e-175 617.5 447 71.1
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 1.8e-172 609.8 439 71.3
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 1.8e-172 609.8 429 71.6
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 6.9e-172 607.8 434 71.0
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 6.9e-172 607.8 429 71.3
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 6.9e-172 607.8 427 71.7
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 1.2e-171 607.1 436 70.4
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 1.2e-171 607.1 447 70.5
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 2.0e-171 606.3 434 70.7
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 3.4e-171 605.5 447 68.9
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 5.8e-171 604.7 447 69.4
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 7.6e-171 604.4 430 70.2
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 2.9e-170 602.4 429 71.3
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 2.9e-170 602.4 460 67.0
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 2.9e-170 602.4 430 70.5
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.9e-170 602.4 434 70.5
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 1.4e-169 600.1 465 66.0
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 1.4e-169 600.1 434 69.6
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.9e-169 599.7 434 69.8
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 3.2e-169 599.0 434 70.0
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 7.1e-169 597.8 430 70.2
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 7.1e-169 597.8 447 69.6
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 9.3e-169 597.4 418 71.3
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 2.7e-168 595.9 429 69.9
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 2.7e-168 595.9 429 69.7
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 3.5e-168 595.5 429 70.4
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 4.6e-168 595.1 430 70.0
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 4.6e-168 595.1 456 66.2
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 4.6e-168 595.1 429 69.7
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 6.0e-168 594.7 447 67.6
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 6.0e-168 594.7 447 69.4
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 6.0e-168 594.7 430 68.8
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 1.0e-167 594.0 429 71.6
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 1.0e-167 594.0 430 70.2
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 1.0e-167 594.0 429 69.0
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 1.3e-167 593.6 418 71.1
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 1.3e-167 593.6 430 70.0
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 1.3e-167 593.6 427 69.8
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.3e-167 593.6 450 67.8
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 1.3e-167 593.6 430 69.5
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 1.3e-167 593.6 430 68.6
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 1.8e-167 593.2 430 69.8
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 3.9e-167 592.0 447 67.6
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 3.9e-167 592.0 430 68.8
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 5.1e-167 591.7 429 68.5
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 6.7e-167 591.3 431 69.8
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 6.7e-167 591.3 429 68.5
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 8.7e-167 590.9 447 65.8
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.5e-166 590.1 447 67.3
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 1.5e-166 590.1 430 68.8
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 1.5e-166 590.1 430 69.5
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 1.9e-166 589.7 447 67.1
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 1.9e-166 589.7 429 69.5
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 5.6e-166 588.2 429 70.6
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 5.6e-166 588.2 429 69.9
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 5.6e-166 588.2 447 66.4
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 7.4e-166 587.8 430 68.8
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 7.4e-166 587.8 429 69.2
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 9.6e-166 587.4 430 69.3
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 9.6e-166 587.4 430 69.3
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 1.3e-165 587.0 418 70.6
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 1.6e-165 586.6 447 66.4
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 2.1e-165 586.3 430 68.8
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 2.1e-165 586.3 430 68.8
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 2.1e-165 586.3 429 69.0
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.8e-165 585.9 428 68.7
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 2.8e-165 585.9 430 69.1
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 2.8e-165 585.9 430 68.6
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 2.8e-165 585.9 429 70.2
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.8e-165 585.9 460 65.0
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 3.7e-165 585.5 447 65.5
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 4.8e-165 585.1 430 68.6
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 8.2e-165 584.3 429 69.7
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 1.1e-164 583.9 430 68.4
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 1.1e-164 583.9 419 69.9
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 1.4e-164 583.6 426 69.0
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 1.4e-164 583.6 430 68.8
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 1.4e-164 583.6 447 65.8
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.4e-164 583.6 476 64.3
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 2.4e-164 582.8 426 68.5
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 2.4e-164 582.8 429 69.7
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 3.1e-164 582.4 430 68.1
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 4.0e-164 582.0 429 68.3
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 5.3e-164 581.6 447 65.5
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 6.9e-164 581.3 439 68.6
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 9.0e-164 580.9 429 67.8
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 9.0e-164 580.9 426 68.3
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 9.0e-164 580.9 429 68.5
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 1.2e-163 580.5 429 67.8
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 1.5e-163 580.1 429 67.8
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 4.5e-163 578.6 429 67.8
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 7.6e-163 577.8 429 67.6
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 1.7e-162 576.6 430 68.1
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 2.2e-162 576.2 430 68.1
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 3.8e-162 575.5 429 67.4
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 4.9e-162 575.1 429 66.9
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 4.9e-162 575.1 429 68.3
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 6.5e-162 574.7 429 67.4
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 6.5e-162 574.7 429 67.4
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 6.5e-162 574.7 429 67.4
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 6.5e-162 574.7 429 67.6
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 6.5e-162 574.7 429 66.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.1e-161 573.9 427 68.4
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 1.1e-161 573.9 410 70.2
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 2.5e-161 572.8 429 67.1
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 2.5e-161 572.8 429 67.1
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 7.1e-161 571.2 429 66.9
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 9.3e-161 570.9 434 66.4
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 7.9e-160 567.8 467 63.8
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 1.9e-158 563.1 428 65.7
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 4.8e-157 558.5 475 61.5
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.3e-154 550.4 388 70.9
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 3.6e-152 542.3 516 56.6
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 2.9e-146 522.7 447 63.1
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.3e-138 497.3 435 58.2
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 1.4e-137 493.8 430 60.5
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 3.6e-136 489.2 427 61.6
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.4e-134 482.3 306 81.4
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 4.8e-133 478.8 434 56.0
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 6.3e-133 478.4 432 57.4
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 8.2e-133 478.0 431 58.5
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.8e-132 476.9 477 53.0
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 2.6e-131 473.0 427 58.1
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 4.5e-131 472.2 418 58.9
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 9.4e-121 438.0 406 55.2
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.6e-115 420.6 412 55.3
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.1e-87 328.2 178 84.3
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 1.1e-81 308.1 289 57.1
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 7.6e-62 242.3 223 57.8
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.6e-59 234.6 183 60.7
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 5.8e-46 189.5 108 76.9
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 3.0e-26 124.0 72 75.0
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 5.3e-23 113.2 137 47.4
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 4.5e-22 110.2 96 60.4
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 5.5e-20 103.2 138 42.8
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 2.0e-14 84.7 49 79.6
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 2.7e-11 74.3 46 78.3
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 2.3e-10 71.2 43 74.4
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 6.8e-10 69.7 95 44.2
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.5e-09 68.6 38 76.3


User provided reference genes

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