Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.3e-158 563.1 326 100.0
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 2.6e-37 160.2 118 72.9
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.5e-37 159.5 132 66.7
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.3e-36 157.9 124 67.7
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.3e-36 157.9 124 67.7
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 1.3e-36 157.9 124 67.7
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 1.7e-36 157.5 140 62.9
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.2e-36 157.1 138 63.0
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 2.9e-36 156.8 128 65.6
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.9e-36 156.8 126 67.5
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 2.9e-36 156.8 121 69.4
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 3.8e-36 156.4 124 66.9
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 3.8e-36 156.4 123 67.5
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 3.8e-36 156.4 123 68.3
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 3.8e-36 156.4 122 68.9
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 3.8e-36 156.4 141 61.0
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 5.0e-36 156.0 124 66.1
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 6.5e-36 155.6 123 67.5
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 6.5e-36 155.6 123 67.5
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 6.5e-36 155.6 124 66.9
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 8.5e-36 155.2 122 68.0
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 8.5e-36 155.2 126 66.7
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 8.5e-36 155.2 126 66.7
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 8.5e-36 155.2 122 68.0
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 8.5e-36 155.2 123 66.7
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 8.5e-36 155.2 123 66.7
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 8.5e-36 155.2 123 66.7
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 1.1e-35 154.8 123 66.7
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.1e-35 154.8 123 66.7
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 1.1e-35 154.8 123 66.7
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.1e-35 154.8 122 68.0
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 1.1e-35 154.8 123 66.7
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 1.1e-35 154.8 138 61.6
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 1.1e-35 154.8 124 66.9
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.4e-35 154.5 123 65.9
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.4e-35 154.5 123 65.9
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.4e-35 154.5 123 66.7
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.4e-35 154.5 124 66.1
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.4e-35 154.5 124 66.1
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.4e-35 154.5 124 66.1
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.4e-35 154.5 118 70.3
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 1.4e-35 154.5 118 70.3
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 1.9e-35 154.1 123 65.9
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 1.9e-35 154.1 117 70.9
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.9e-35 154.1 123 65.9
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.9e-35 154.1 124 66.9
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 1.9e-35 154.1 122 68.0
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.9e-35 154.1 123 65.9
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.9e-35 154.1 123 66.7
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 1.9e-35 154.1 122 68.0
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 2.5e-35 153.7 122 67.2
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 2.5e-35 153.7 123 65.9
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 2.5e-35 153.7 123 66.7
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 2.5e-35 153.7 123 65.9
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 2.5e-35 153.7 123 65.9
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 3.2e-35 153.3 123 65.9
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 3.2e-35 153.3 123 65.0
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 3.2e-35 153.3 128 64.1
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 3.2e-35 153.3 128 65.6
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 3.2e-35 153.3 123 65.9
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 3.2e-35 153.3 122 66.4
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 3.2e-35 153.3 122 66.4
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 3.2e-35 153.3 122 67.2
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 3.2e-35 153.3 123 66.7
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 4.2e-35 152.9 124 66.1
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 4.2e-35 152.9 117 70.1
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 4.2e-35 152.9 124 66.1
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 4.2e-35 152.9 123 66.7
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 4.2e-35 152.9 123 65.9
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 4.2e-35 152.9 117 70.1
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 5.5e-35 152.5 118 69.5
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 5.5e-35 152.5 123 65.0
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 5.5e-35 152.5 122 67.2
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 5.5e-35 152.5 122 67.2
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 5.5e-35 152.5 123 65.9
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 7.2e-35 152.1 177 52.5
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 7.2e-35 152.1 123 65.0
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 9.4e-35 151.8 123 65.0
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 9.4e-35 151.8 123 65.0
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 9.4e-35 151.8 123 65.0
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 9.4e-35 151.8 123 65.0
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 9.4e-35 151.8 123 65.0
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 9.4e-35 151.8 123 65.0
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 9.4e-35 151.8 122 65.6
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 9.4e-35 151.8 117 69.2
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 9.4e-35 151.8 123 65.0
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 9.4e-35 151.8 122 67.2
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 1.2e-34 151.4 117 69.2
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 1.2e-34 151.4 119 68.1
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 1.2e-34 151.4 123 65.0
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.6e-34 151.0 123 65.0
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.6e-34 151.0 123 65.0
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.6e-34 151.0 117 70.1
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.1e-34 150.6 123 64.2
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 2.1e-34 150.6 175 52.0
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.1e-34 150.6 123 65.0
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 2.7e-34 150.2 123 64.2
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 2.7e-34 150.2 123 64.2
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 2.7e-34 150.2 123 64.2
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 2.7e-34 150.2 123 64.2
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 2.7e-34 150.2 123 64.2
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.7e-34 150.2 123 64.2
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.7e-34 150.2 123 64.2
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 2.7e-34 150.2 123 64.2
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.6e-34 149.8 123 64.2
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 3.6e-34 149.8 122 66.4
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 4.7e-34 149.4 123 64.2
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 4.7e-34 149.4 123 64.2
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 4.7e-34 149.4 123 64.2
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 4.7e-34 149.4 123 64.2
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 4.7e-34 149.4 123 64.2
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 4.7e-34 149.4 123 64.2
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 4.7e-34 149.4 123 64.2
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 6.1e-34 149.1 117 67.5
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 6.1e-34 149.1 139 60.4
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.0e-33 148.3 123 63.4
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.0e-33 148.3 123 63.4
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.0e-33 148.3 116 68.1
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 1.8e-33 147.5 118 66.9
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.3e-33 147.1 123 63.4
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 3.0e-33 146.7 120 65.8
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 3.9e-33 146.4 120 65.0
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 5.1e-33 146.0 118 65.3
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.3e-31 141.4 121 60.3
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 1.7e-31 141.0 104 70.2
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 1.7e-31 141.0 118 62.7
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.2e-31 140.6 113 63.7
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 3.7e-31 139.8 113 63.7
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 8.2e-31 138.7 112 65.2
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.1e-30 138.3 127 60.6
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 1.0e-28 131.7 89 70.8
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 1.0e-28 131.7 102 64.7
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.0e-28 131.7 209 42.1
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 3.8e-28 129.8 135 54.1
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 5.0e-28 129.4 107 61.7
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 1.1e-27 128.3 63 92.1
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.9e-27 127.5 60 96.7
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.5e-27 127.1 60 95.0
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 2.5e-27 127.1 82 74.4
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 3.2e-27 126.7 142 51.4
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 5.5e-27 125.9 80 76.2
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 2.7e-26 123.6 106 58.5
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 3.9e-25 119.8 61 90.2
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 1.5e-24 117.9 103 61.2
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 8.2e-23 112.1 101 59.4
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.0e-22 109.0 90 65.6
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.6e-21 107.8 96 59.4
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 3.5e-21 106.7 123 52.0
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 5.9e-21 105.9 129 51.9
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 2.1e-18 97.4 69 68.1
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.4e-08 63.2 145 36.6
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-06 57.8 53 47.2


User provided reference genes

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