Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 2.0e-294 1015.0 494 100.0
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 6.3e-184 647.9 501 65.7
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 3.5e-182 642.1 494 66.4
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 8.8e-178 627.5 490 65.1
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 1.2e-174 617.1 499 63.3
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 1.2e-174 617.1 493 63.5
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.9e-174 614.8 491 64.4
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 3.8e-173 612.1 494 63.4
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 5.0e-173 611.7 501 62.7
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 4.2e-172 608.6 501 62.3
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 2.1e-171 606.3 491 62.3
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.8e-171 605.9 489 62.6
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.0e-170 604.0 493 62.3
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 1.4e-170 603.6 489 63.2
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 2.3e-170 602.8 497 63.0
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 4.0e-170 602.1 499 63.1
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 5.2e-170 601.7 494 62.1
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 8.9e-170 600.9 489 63.4
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.2e-169 600.5 491 63.7
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.5e-169 600.1 491 62.3
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.0e-169 599.7 506 61.7
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.6e-169 599.4 484 63.4
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 3.4e-169 599.0 488 63.9
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 3.4e-169 599.0 480 63.8
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 4.4e-169 598.6 491 62.1
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 7.5e-169 597.8 491 63.1
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 2.2e-168 596.3 491 61.5
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 3.7e-168 595.5 489 63.0
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 6.3e-168 594.7 483 63.6
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 8.3e-168 594.3 501 61.1
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 3.1e-167 592.4 490 62.4
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 7.0e-167 591.3 484 62.0
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 9.2e-167 590.9 488 61.7
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 9.2e-167 590.9 491 60.7
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.2e-166 590.5 496 59.9
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.2e-166 590.5 491 61.1
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 2.0e-166 589.7 489 62.8
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 2.0e-166 589.7 481 63.6
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 2.7e-166 589.3 498 60.8
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 3.5e-166 589.0 481 62.8
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.5e-166 588.6 495 61.0
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 4.5e-166 588.6 485 62.5
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 5.9e-166 588.2 489 61.3
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.3e-165 587.0 484 64.0
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.7e-165 586.6 481 62.6
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.9e-165 585.9 481 63.0
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 6.6e-165 584.7 483 61.7
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 6.6e-165 584.7 478 62.3
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 2.5e-164 582.8 512 60.0
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 3.3e-164 582.4 483 61.9
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 9.5e-164 580.9 492 62.0
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 9.5e-164 580.9 492 62.0
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.6e-163 580.1 489 61.6
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 1.6e-163 580.1 480 62.7
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.6e-163 580.1 487 60.6
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 2.1e-163 579.7 479 62.8
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 3.6e-163 578.9 487 61.0
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 6.1e-163 578.2 501 61.1
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 6.8e-162 574.7 480 61.9
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.2e-161 573.9 477 62.3
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.0e-161 573.2 489 60.9
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.6e-161 572.8 481 62.2
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 4.4e-161 572.0 502 60.4
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 1.7e-160 570.1 526 58.6
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 4.1e-159 565.5 494 60.1
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 2.0e-158 563.1 476 60.5
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.0e-157 560.8 542 55.7
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 3.0e-157 559.3 504 57.5
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 5.6e-156 555.1 477 61.0
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 6.2e-155 551.6 473 60.5
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 5.2e-154 548.5 461 62.3
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 4.4e-153 545.4 506 58.9
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 1.2e-150 537.3 483 58.6
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 3.0e-149 532.7 556 51.8
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 3.9e-149 532.3 491 57.6
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.5e-148 529.6 482 56.8
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 8.1e-147 524.6 480 59.8
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 2.0e-145 520.0 488 57.0
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 4.1e-143 512.3 467 57.8
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 5.4e-143 511.9 489 56.2
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 9.2e-143 511.1 495 55.4
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 3.9e-141 505.8 483 56.5
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.6e-139 500.4 482 55.0
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 6.2e-139 498.4 489 53.0
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 4.0e-138 495.7 514 52.1
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 5.2e-138 495.4 493 54.8
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 1.4e-135 487.3 411 62.0
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 2.4e-135 486.5 479 55.5
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 6.0e-134 481.9 413 60.0
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 2.3e-133 479.9 481 53.8
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 5.1e-133 478.8 502 54.0
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.5e-132 477.2 416 59.6
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 3.3e-132 476.1 526 51.5
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 6.9e-130 468.4 478 53.3
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 2.6e-129 466.5 547 47.5
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 4.9e-128 462.2 483 53.6
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.0e-125 454.5 394 59.4
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.3e-125 454.1 474 50.8
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.9e-125 452.6 481 53.4
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.6e-123 447.2 289 73.0
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 8.1e-123 444.9 511 49.1
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.3e-120 437.6 464 53.4
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 3.5e-118 429.5 388 57.7
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 2.1e-115 420.2 268 73.9
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 7.9e-110 401.7 513 48.1
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 4.0e-106 389.4 850 32.6
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.5e-105 387.5 463 48.2
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.4e-103 380.9 409 51.8
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.2e-97 361.3 356 55.3
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 6.7e-93 345.5 400 51.2
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 3.3e-92 343.2 478 44.1
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-91 340.9 631 36.5
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.7e-88 330.9 486 43.8
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 5.0e-88 329.3 228 67.1
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.7e-83 314.3 456 45.8
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 4.7e-78 296.2 356 47.8
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 4.7e-78 296.2 489 38.2
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.5e-71 274.6 191 64.4
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 9.4e-71 271.9 278 49.3
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 9.4e-63 245.4 281 45.6
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.6e-54 218.0 343 38.8
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 4.7e-54 216.5 126 76.2
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.4e-53 214.9 132 73.5
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.3e-53 214.2 432 37.5
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.4e-50 204.9 342 34.8
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.0e-48 198.7 114 78.9
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 5.4e-42 176.4 103 80.6
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 7.0e-34 149.4 87 81.6
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 1.2e-22 112.1 76 71.1
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.6e-17 95.1 58 69.0
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 6.0e-17 93.2 125 38.4
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 5.6e-15 86.7 63 66.7
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.3e-14 85.5 106 44.3
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 3.8e-11 73.9 52 73.1
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 8.4e-11 72.8 73 50.7
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 4.2e-10 70.5 49 69.4
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 2.7e-09 67.8 94 41.5
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 7.8e-09 66.2 41 68.3
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 5.1e-08 63.5 43 69.8


User provided reference genes

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