Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 7.7e-237 823.5 452 100.0
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 3.8e-87 326.2 631 38.7
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 3.1e-84 316.6 626 38.2
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 1.1e-81 308.1 625 36.5
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 2.4e-81 307.0 629 37.0
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 2.4e-81 307.0 623 36.4
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 3.5e-80 303.1 610 36.7
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 1.7e-79 300.8 455 44.8
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 1.7e-79 300.8 626 36.4
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.3e-79 300.4 536 40.3
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 5.0e-79 299.3 628 36.5
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 8.6e-79 298.5 456 43.6
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 1.9e-78 297.4 610 36.6
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 7.3e-78 295.4 600 37.0
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 2.1e-77 293.9 602 36.7
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 2.1e-77 293.9 604 37.3
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 2.8e-77 293.5 473 42.9
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 2.8e-77 293.5 602 36.2
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.8e-77 293.5 602 36.2
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 3.6e-77 293.1 628 36.0
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 4.7e-77 292.7 597 36.9
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 8.0e-77 292.0 619 36.0
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 8.0e-77 292.0 596 36.7
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 8.0e-77 292.0 601 36.6
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 8.0e-77 292.0 672 35.4
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 1.1e-76 291.6 601 36.6
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 1.1e-76 291.6 603 37.3
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 1.1e-76 291.6 482 42.1
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 1.4e-76 291.2 604 36.4
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.8e-76 290.8 603 36.0
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 5.2e-76 289.3 603 36.0
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 6.8e-76 288.9 620 35.6
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 6.8e-76 288.9 601 36.3
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 6.8e-76 288.9 602 35.9
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 6.8e-76 288.9 627 35.7
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 2.0e-75 287.3 612 36.6
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 4.4e-75 286.2 610 36.9
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 4.4e-75 286.2 602 36.7
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 7.5e-75 285.4 603 35.7
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 7.5e-75 285.4 616 35.7
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 1.3e-74 284.6 602 35.7
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 1.3e-74 284.6 604 36.1
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.3e-74 284.6 604 35.9
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.2e-74 283.9 620 35.5
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 2.9e-74 283.5 459 42.3
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 6.4e-74 282.3 604 35.4
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 6.4e-74 282.3 602 35.5
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 1.1e-73 281.6 602 35.7
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 1.9e-73 280.8 602 35.5
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 7.0e-73 278.9 601 34.9
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 7.0e-73 278.9 665 34.3
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 9.2e-73 278.5 473 42.1
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 2.1e-72 277.3 601 35.6
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 3.5e-72 276.6 602 35.2
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 7.8e-72 275.4 291 61.5
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 1.3e-71 274.6 602 35.2
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 1.7e-71 274.2 521 38.8
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 6.6e-71 272.3 434 44.5
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 8.6e-71 271.9 602 35.0
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.1e-70 271.6 434 44.2
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 1.9e-70 270.8 604 35.3
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 3.3e-70 270.0 622 34.4
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 4.3e-70 269.6 434 44.0
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 1.8e-68 264.2 598 35.5
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 1.8e-68 264.2 598 35.3
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 4.0e-68 263.1 598 35.5
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 5.2e-68 262.7 598 35.3
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 5.2e-68 262.7 587 35.8
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 8.9e-68 261.9 456 39.7
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 1.2e-67 261.5 602 34.7
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 1.5e-67 261.2 473 40.6
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 3.4e-67 260.0 594 35.4
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 4.4e-67 259.6 455 41.8
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 7.5e-67 258.8 455 41.1
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 7.5e-67 258.8 594 35.4
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 9.9e-67 258.5 623 33.7
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 1.3e-66 258.1 487 40.0
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.1e-65 255.0 443 40.2
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 1.9e-65 254.2 611 32.9
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 7.1e-65 252.3 455 40.9
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 9.2e-65 251.9 477 39.0
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.2e-64 251.5 455 40.0
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 1.6e-64 251.1 675 32.0
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 6.0e-64 249.2 477 37.9
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.1e-63 246.1 558 34.9
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 1.5e-62 244.6 463 39.3
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 5.6e-62 242.7 564 33.3
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 8.9e-60 235.3 417 40.8
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 8.9e-60 235.3 579 34.2
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.2e-59 235.0 499 37.3
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 9.9e-59 231.9 421 40.9
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 9.9e-59 231.9 421 40.9
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 1.9e-54 217.6 585 33.8
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 5.6e-54 216.1 418 38.0
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.6e-53 214.5 584 31.7
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 2.8e-53 213.8 694 30.1
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 3.1e-52 210.3 408 38.5
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 9.3e-49 198.7 431 35.3
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 7.8e-48 195.7 403 34.7
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 2.0e-43 181.0 457 31.9
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 3.4e-43 180.3 388 35.8
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 8.4e-42 175.6 359 35.4
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 2.5e-38 164.1 486 28.0
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 6.2e-37 159.5 456 29.4
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 3.4e-35 153.7 592 29.4
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 1.3e-34 151.8 133 61.7
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.7e-34 151.4 280 38.6
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 1.7e-34 151.4 281 38.4
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 8.4e-34 149.1 275 36.4
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.1e-33 148.7 252 41.3
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 3.2e-33 147.1 130 61.5
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 6.0e-32 142.9 333 36.3
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 2.3e-31 141.0 231 40.3
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 1.5e-30 138.3 438 29.5
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 9.6e-30 135.6 120 63.3
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.0e-28 130.2 483 28.4
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 3.5e-24 117.1 217 36.9
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.1e-23 113.2 109 55.0
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 1.1e-14 85.5 83 60.2
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 9.7e-14 82.4 250 31.2
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 3.8e-10 70.5 100 43.0
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.9e-09 68.2 106 44.3
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 4.2e-09 67.0 82 52.4
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 4.7e-08 63.5 54 63.0
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 3.9e-07 60.5 57 64.9
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 5.1e-07 60.1 57 54.4
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 1.1e-06 58.9 55 58.2
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.0e-06 58.2 35 71.4


User provided reference genes

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