Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 0.0e+00 1414.8 740 100.0
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 3.9e-36 157.5 821 28.9
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.2e-32 146.0 883 27.6
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.7e-29 134.8 893 27.5
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 7.8e-29 133.3 860 27.3
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 1.3e-28 132.5 878 26.0
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.9e-27 128.6 877 27.3
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 7.3e-27 126.7 885 26.9
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 2.1e-26 125.2 883 25.7
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 4.8e-26 124.0 885 26.8
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 5.3e-25 120.6 864 27.0
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 6.9e-25 120.2 885 25.0
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 2.0e-24 118.6 755 27.5
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 1.3e-23 115.9 872 25.5
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.3e-23 115.9 880 24.8
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 1.9e-22 112.1 847 26.1
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 1.6e-21 109.0 862 25.6
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 1.7e-20 105.5 868 25.9
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 3.0e-20 104.8 884 25.3
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 5.1e-20 104.0 850 24.8
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.1e-19 102.8 899 25.5
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.5e-19 102.4 396 31.8
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.5e-19 102.4 867 25.6
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.9e-19 102.1 634 26.7
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.9e-19 102.1 880 26.5
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.9e-19 102.1 884 25.6
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 2.5e-19 101.7 907 25.8
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 4.3e-19 100.9 919 24.2
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 7.3e-19 100.1 862 25.1
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 9.6e-19 99.8 879 25.3
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 8.1e-18 96.7 851 25.4
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 8.1e-18 96.7 908 24.6
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 8.1e-18 96.7 879 25.5
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.1e-17 96.3 878 26.1
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.1e-17 96.3 943 24.3
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.8e-17 95.5 887 26.2
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 6.9e-17 93.6 883 24.0
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 6.9e-17 93.6 912 23.2
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 9.0e-17 93.2 899 24.9
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 9.0e-17 93.2 393 30.5
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 1.2e-16 92.8 881 25.9
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.2e-16 92.8 885 24.5
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.0e-16 92.0 877 26.1
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 3.4e-16 91.3 823 26.6
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 7.6e-16 90.1 801 25.0
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.7e-15 89.0 219 37.0
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.7e-15 89.0 801 25.0
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 2.9e-15 88.2 857 25.1
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 2.9e-15 88.2 876 24.9
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 8.4e-15 86.7 731 24.6
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.9e-14 85.5 849 25.0
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 3.2e-14 84.7 328 32.3
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 4.2e-14 84.3 851 25.5
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 4.2e-14 84.3 832 24.3
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 6.0e-13 80.5 882 24.8
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 7.9e-13 80.1 813 25.0
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 7.9e-13 80.1 885 22.7
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 7.9e-13 80.1 738 24.7
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.0e-12 79.7 874 25.1
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 1.0e-12 79.7 824 27.1
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 1.3e-12 79.3 853 23.8
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 3.0e-12 78.2 852 25.1
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 3.0e-12 78.2 307 32.9
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.9e-12 77.8 878 23.7
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 5.1e-12 77.4 917 24.1
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 8.7e-12 76.6 851 23.3
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 8.7e-12 76.6 834 24.3
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 8.7e-12 76.6 866 23.0
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 8.7e-12 76.6 852 25.0
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 1.5e-11 75.9 909 24.0
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.9e-11 75.5 800 23.2
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 3.3e-11 74.7 851 24.8
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.3e-11 74.3 862 24.9
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 4.3e-11 74.3 777 26.4
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 5.6e-11 73.9 839 24.9
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 7.4e-11 73.6 281 33.5
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 9.6e-11 73.2 266 33.1
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 9.6e-11 73.2 782 23.9
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 1.3e-10 72.8 836 25.0
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.1e-10 72.0 821 25.6
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 4.8e-10 70.9 865 24.2
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 4.8e-10 70.9 905 22.3
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 6.2e-10 70.5 289 31.8
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 8.1e-10 70.1 772 25.9
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 8.1e-10 70.1 839 23.0
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.1e-09 69.7 849 23.3
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 1.8e-09 68.9 794 24.4
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 2.4e-09 68.6 909 23.2
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 3.1e-09 68.2 895 24.1
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 4.0e-09 67.8 861 24.5
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 5.3e-09 67.4 412 26.5
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 9.0e-09 66.6 859 22.6
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 9.0e-09 66.6 902 23.7
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 9.0e-09 66.6 761 24.0
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 1.5e-08 65.9 411 27.3
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 2.0e-08 65.5 886 23.7
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 2.0e-08 65.5 788 23.5
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 2.0e-08 65.5 124 38.7
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 2.6e-08 65.1 864 22.2
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 4.5e-08 64.3 786 22.9
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 4.5e-08 64.3 836 23.7
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 4.5e-08 64.3 753 24.8
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 5.8e-08 63.9 307 31.6
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 5.8e-08 63.9 118 40.7
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 5.8e-08 63.9 274 30.3
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 5.8e-08 63.9 286 29.4
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 7.6e-08 63.5 178 35.4
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.3e-07 62.8 786 23.8
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 1.3e-07 62.8 876 23.1
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.7e-07 62.4 877 23.7
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.2e-07 62.0 813 23.1
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 2.2e-07 62.0 155 37.4
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 2.9e-07 61.6 156 34.6
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 3.8e-07 61.2 883 23.0
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 4.9e-07 60.8 174 35.1
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 4.9e-07 60.8 432 27.5
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 1.1e-06 59.7 815 25.3
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 1.4e-06 59.3 152 36.8
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 1.9e-06 58.9 537 25.0
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 1.9e-06 58.9 712 24.4
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.5e-06 58.5 860 24.3
Lj5A52T19 Lonicera japonica HOM05D008208 ORTHO05D010143 2.5e-06 58.5 186 31.7
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 3.2e-06 58.2 756 23.5
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 3.2e-06 58.2 420 27.6
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 4.2e-06 57.8 96 51.0
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 5.5e-06 57.4 885 21.6
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 5.5e-06 57.4 258 29.1
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 7.1e-06 57.0 924 23.4
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 7.1e-06 57.0 44 61.4
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 7.1e-06 57.0 882 22.1
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 7.1e-06 57.0 697 22.7
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 7.1e-06 57.0 455 27.0
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 7.1e-06 57.0 156 33.3
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 9.3e-06 56.6 231 32.5


User provided reference genes

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