Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 8.3e-85 317.0 161 100.0
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 1.4e-60 236.5 158 70.9
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 7.1e-60 234.2 160 70.0
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 9.3e-60 233.8 156 71.8
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 9.3e-60 233.8 156 71.8
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 2.7e-59 232.3 156 69.9
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.7e-59 232.3 160 72.5
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 3.5e-59 231.9 154 71.4
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 3.5e-59 231.9 154 72.1
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 4.6e-59 231.5 158 70.9
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 6.0e-59 231.1 156 69.9
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 7.8e-59 230.7 158 70.3
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 7.8e-59 230.7 154 70.8
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 1.3e-58 229.9 156 69.9
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.7e-58 229.6 158 69.6
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.7e-58 229.6 161 71.4
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 2.3e-58 229.2 158 68.4
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.3e-58 229.2 158 69.6
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.3e-58 229.2 157 70.1
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.3e-58 229.2 157 70.1
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.0e-58 228.8 158 69.6
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 3.0e-58 228.8 156 67.3
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 3.9e-58 228.4 156 67.9
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 5.1e-58 228.0 156 68.6
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 5.1e-58 228.0 161 70.8
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 6.6e-58 227.6 161 68.9
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.1e-57 226.9 161 68.9
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.1e-57 226.9 156 69.9
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 3.3e-57 225.3 154 72.1
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 3.3e-57 225.3 156 69.2
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 3.3e-57 225.3 154 70.8
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 5.6e-57 224.6 159 71.1
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 5.6e-57 224.6 156 67.9
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 7.3e-57 224.2 154 68.8
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 9.6e-57 223.8 154 68.2
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.6e-56 223.0 154 68.2
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 1.6e-56 223.0 154 69.5
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 2.1e-56 222.6 154 69.5
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.1e-56 222.6 154 69.5
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.1e-56 222.6 154 69.5
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.1e-56 222.6 154 69.5
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.1e-56 222.6 154 69.5
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.1e-56 222.6 154 69.5
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.1e-56 222.6 156 68.6
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 2.8e-56 222.2 154 70.8
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 2.8e-56 222.2 154 70.1
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 2.8e-56 222.2 154 68.8
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 2.8e-56 222.2 149 71.1
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 2.8e-56 222.2 154 68.8
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.6e-56 221.9 146 69.2
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.6e-56 221.9 154 72.7
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 3.6e-56 221.9 156 67.3
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 4.8e-56 221.5 156 67.9
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 4.8e-56 221.5 156 67.9
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 6.2e-56 221.1 144 72.9
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 6.2e-56 221.1 154 68.2
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 6.2e-56 221.1 156 68.6
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 6.2e-56 221.1 154 68.8
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 8.1e-56 220.7 154 68.8
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 8.1e-56 220.7 154 67.5
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 8.1e-56 220.7 154 69.5
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.1e-55 220.3 156 67.9
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.1e-55 220.3 154 67.5
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.1e-55 220.3 156 69.9
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 2.4e-55 219.2 158 70.3
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 2.4e-55 219.2 156 67.9
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 3.1e-55 218.8 156 68.6
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 3.1e-55 218.8 156 68.6
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 3.1e-55 218.8 156 67.9
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 3.1e-55 218.8 154 67.5
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 4.0e-55 218.4 158 64.6
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 5.3e-55 218.0 154 68.8
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 5.3e-55 218.0 154 68.8
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 6.9e-55 217.6 154 67.5
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 6.9e-55 217.6 146 70.5
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 1.2e-54 216.9 156 67.3
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.2e-54 216.9 156 66.7
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.2e-54 216.9 156 66.7
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.5e-54 216.5 154 66.9
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 2.0e-54 216.1 156 66.7
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 3.4e-54 215.3 154 68.8
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 3.4e-54 215.3 154 68.2
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 3.4e-54 215.3 156 66.7
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 4.5e-54 214.9 157 66.2
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 4.5e-54 214.9 157 66.2
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 5.8e-54 214.5 153 69.3
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 5.8e-54 214.5 154 67.5
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 7.6e-54 214.2 154 66.9
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 7.6e-54 214.2 154 68.2
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.3e-53 213.4 154 68.2
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.7e-53 213.0 155 68.4
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.7e-53 213.0 155 68.4
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.7e-53 213.0 155 68.4
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.7e-53 213.0 155 68.4
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.7e-53 213.0 155 68.4
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.7e-53 213.0 153 68.6
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.7e-53 213.0 153 68.0
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.2e-53 212.6 154 66.9
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 2.9e-53 212.2 153 68.0
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 2.9e-53 212.2 153 68.0
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 4.9e-53 211.5 150 68.7
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 4.9e-53 211.5 154 66.9
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.9e-52 209.5 152 67.1
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.4e-52 209.1 150 68.0
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 2.4e-52 209.1 155 63.9
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 4.2e-52 208.4 149 68.5
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 4.2e-52 208.4 149 68.5
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 4.2e-52 208.4 149 68.5
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 5.4e-52 208.0 150 67.3
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 9.3e-52 207.2 153 65.4
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 2.3e-50 202.6 156 63.5
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 8.7e-50 200.7 154 60.4
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.1e-49 200.3 140 69.3
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.1e-48 196.1 143 69.2
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 8.1e-48 194.1 203 50.7
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.1e-47 193.7 194 54.1
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 3.1e-47 192.2 135 68.9
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 9.0e-47 190.7 244 45.1
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.4e-46 188.7 155 60.0
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.7e-45 186.4 123 74.0
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 2.9e-45 185.7 208 48.1
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.2e-43 180.3 125 68.8
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.5e-43 178.7 156 53.8
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 7.4e-41 171.0 156 54.5
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 3.7e-40 168.7 112 69.6
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.8e-39 166.4 140 60.0
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 6.9e-39 164.5 299 35.8
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 6.5e-37 157.9 109 70.6
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.5e-30 136.7 96 71.9
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 3.4e-30 135.6 107 63.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.0e-29 134.0 133 51.9
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 1.1e-28 130.6 95 67.4
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 9.3e-28 127.5 154 40.9
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 5.1e-26 121.7 149 43.6
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 6.7e-26 121.3 149 43.6
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 8.8e-26 120.9 77 71.4
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 1.9e-25 119.8 150 41.3
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 7.4e-25 117.9 132 44.7
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 9.7e-25 117.5 130 50.8
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 1.5e-22 110.2 85 63.5
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.9e-22 108.2 96 60.4
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.9e-22 108.2 96 60.4
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 7.7e-22 107.8 141 41.1
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.7e-21 106.7 144 42.4
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 2.9e-21 105.9 65 75.4
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.8e-21 105.5 65 76.9
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 6.5e-21 104.8 146 46.6
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 7.2e-20 101.3 64 75.0
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.0e-18 97.4 64 71.9
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 4.1e-15 85.5 78 60.3
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 5.9e-14 81.6 101 48.5
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 2.2e-08 63.2 69 50.7
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 6.3e-08 61.6 69 49.3
SMO116G0085 Selaginella moellendorffii HOM05D004743 ORTHO05D005698 1.1e-07 60.8 136 32.4


User provided reference genes

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