Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 8.3e-120 433.7 218 100.0
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 3.0e-106 388.7 213 90.1
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 3.0e-106 388.7 212 89.6
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 2.0e-105 386.0 212 89.2
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 3.4e-105 385.2 213 88.3
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 7.5e-105 384.0 213 87.3
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.2e-104 382.5 213 88.3
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 2.9e-104 382.1 212 87.7
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 3.7e-104 381.7 213 87.3
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 3.7e-104 381.7 217 85.7
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.9e-104 381.3 213 87.8
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 6.4e-104 380.9 212 88.2
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 6.4e-104 380.9 212 88.2
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 6.4e-104 380.9 213 87.3
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 8.3e-104 380.6 212 87.3
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 8.3e-104 380.6 212 88.7
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.1e-103 380.2 212 88.7
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 1.8e-103 379.4 213 86.9
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.8e-103 379.4 212 86.3
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 1.8e-103 379.4 213 86.9
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.8e-103 379.4 217 87.1
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 2.4e-103 379.0 212 87.3
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 2.4e-103 379.0 212 88.2
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.4e-103 379.0 213 88.3
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 3.2e-103 378.6 213 86.4
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 5.4e-103 377.9 212 87.3
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 5.4e-103 377.9 213 85.4
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 5.4e-103 377.9 212 86.8
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 7.0e-103 377.5 212 86.3
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 7.0e-103 377.5 212 87.3
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 9.2e-103 377.1 213 85.4
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 9.2e-103 377.1 213 85.4
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 9.2e-103 377.1 212 85.8
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 1.6e-102 376.3 212 84.9
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 4.6e-102 374.8 212 86.8
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 4.6e-102 374.8 212 86.8
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 4.6e-102 374.8 212 85.8
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 4.6e-102 374.8 213 85.0
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 7.8e-102 374.0 212 86.3
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.0e-101 373.6 212 86.3
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.7e-101 372.9 212 84.9
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 2.3e-101 372.5 212 85.4
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 3.0e-101 372.1 212 86.3
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 3.9e-101 371.7 213 85.4
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 3.9e-101 371.7 213 84.5
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 6.6e-101 370.9 213 83.6
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 6.6e-101 370.9 212 84.4
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 6.6e-101 370.9 212 86.8
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 6.6e-101 370.9 212 86.8
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 6.6e-101 370.9 212 86.8
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 6.6e-101 370.9 217 82.9
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 8.6e-101 370.5 213 83.1
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.1e-100 370.2 212 84.4
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 1.1e-100 370.2 211 84.8
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 1.1e-100 370.2 213 83.6
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.5e-100 369.8 213 83.6
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 1.5e-100 369.8 213 83.6
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.9e-100 369.4 212 84.0
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 1.9e-100 369.4 212 84.0
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 2.5e-100 369.0 213 83.1
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 4.3e-100 368.2 212 85.8
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 4.3e-100 368.2 213 84.0
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 4.3e-100 368.2 212 84.0
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 5.6e-100 367.9 213 82.6
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 5.6e-100 367.9 213 83.6
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 5.6e-100 367.9 213 83.1
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 5.6e-100 367.9 213 82.6
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 7.3e-100 367.5 211 84.8
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 9.5e-100 367.1 213 83.1
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 9.5e-100 367.1 213 83.1
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 9.5e-100 367.1 213 83.1
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 9.5e-100 367.1 213 83.1
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 9.5e-100 367.1 213 82.6
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.6e-99 366.3 213 82.2
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.6e-99 366.3 213 82.6
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 2.1e-99 365.9 213 82.6
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 2.1e-99 365.9 213 82.6
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 6.2e-99 364.4 217 82.0
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 1.0e-98 363.6 212 85.4
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.0e-98 363.6 220 81.4
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 5.2e-98 361.3 213 82.2
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 8.9e-98 360.5 218 82.1
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.5e-97 359.8 233 77.3
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 2.0e-97 359.4 237 76.8
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 4.9e-96 354.8 259 71.8
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.4e-95 353.2 196 86.2
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.4e-95 353.2 212 84.0
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 9.2e-95 350.5 260 68.5
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.7e-93 346.3 199 83.4
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.1e-92 343.6 217 74.2
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 4.3e-92 341.7 217 76.0
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 7.3e-92 340.9 217 76.0
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 2.1e-91 339.3 212 79.7
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 8.9e-90 334.0 206 80.6
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 2.0e-89 332.8 213 77.0
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 3.4e-89 332.0 213 76.1
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.9e-87 326.2 217 71.4
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 2.4e-87 325.9 324 55.9
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 7.1e-87 324.3 217 73.7
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 9.2e-87 323.9 199 79.9
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 4.6e-86 321.6 213 76.5
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 7.8e-86 320.9 215 73.5
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 2.8e-83 312.4 187 81.8
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.8e-82 309.7 186 81.2
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 3.8e-80 302.0 196 79.1
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 5.4e-79 298.1 200 73.5
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 9.2e-79 297.4 213 66.7
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 2.5e-76 289.3 211 71.1
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.3e-69 266.2 151 85.4
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.3e-67 260.4 286 53.1
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 3.1e-66 255.8 143 86.0
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 2.6e-65 252.7 157 80.3
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 8.4e-64 247.7 216 64.4
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 1.6e-62 243.4 217 53.5
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.7e-62 242.7 152 77.0
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 5.1e-61 238.4 225 52.9
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 6.4e-56 221.5 147 73.5
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 6.0e-46 188.3 99 91.9
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 5.9e-41 171.8 160 56.2
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 6.5e-40 168.3 221 45.2
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.2e-38 164.1 227 39.2
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.0e-37 161.0 158 58.2
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 7.4e-36 154.8 212 46.2
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.2e-35 153.3 87 83.9
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.9e-31 140.2 82 80.5
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.8e-29 133.7 124 58.9
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.9e-23 113.6 62 85.5
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.9e-23 113.6 63 82.5
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 2.7e-22 109.8 89 62.9
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 9.1e-18 94.7 62 69.4
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 3.8e-16 89.4 137 43.8
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 4.7e-14 82.4 44 81.8
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 8.8e-13 78.2 56 69.6
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.0e-12 77.0 55 69.1
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 5.9e-09 65.5 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 5.9e-09 65.5 55 63.6
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 6.1e-06 55.5 47 51.1


User provided reference genes

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