Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001761 Vanilla planifolia HOM05D003804 ORTHO05D004350 6.2e-143 510.8 256 100.0
MBI07_g30495_MAGBIO Magnolia biondii HOM05D003804 ORTHO05D004350 6.9e-33 145.2 173 49.7
MBI10_g37182_MAGBIO Magnolia biondii HOM05D003804 ORTHO05D004350 8.4e-31 138.3 167 49.1
CSS0050159 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 1.3e-28 131.0 211 39.3
CSS0024163 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 1.8e-28 130.6 211 39.8
CSS0040175 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 1.8e-28 130.6 211 39.8
Dinv08268 Davidia involucrata HOM05D003804 ORTHO05D004350 1.1e-27 127.9 211 40.3
GSVIVG01023535001 Vitis vinifera HOM05D003804 ORTHO05D004350 1.5e-27 127.5 167 46.1
TAR636G0278 Trochodendron aralioides HOM05D003804 ORTHO05D004350 1.3e-26 124.4 167 45.5
Cc02_g08970 Coffea canephora HOM05D003804 ORTHO05D004350 1.4e-25 120.9 211 39.8
CSS0006152 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 3.1e-25 119.8 209 38.3
Aqoxy2G03639 Aquilegia oxysepala HOM05D003804 ORTHO05D004350 4.0e-25 119.4 167 44.3
PSO017G7263 Papaver somniferum HOM05D003804 ORTHO05D004350 4.0e-25 119.4 167 42.5
PSO063G7164 Papaver somniferum HOM05D003804 ORTHO05D004350 6.9e-25 118.6 167 42.5
Cpa.g.sc51.6 Carica papaya HOM05D003804 ORTHO05D004350 2.6e-24 116.7 167 43.1
Rhsim05G0175100 Rhododendron simsii HOM05D003804 ORTHO05D004350 3.4e-24 116.3 209 36.4
Rhsim09G0137900 Rhododendron simsii HOM05D003804 ORTHO05D004350 1.0e-23 114.8 211 37.4
Dinv14606 Davidia involucrata HOM05D003804 ORTHO05D004350 1.3e-23 114.4 167 43.7
Lj1g0028056 Lotus japonicus HOM05D003804 ORTHO05D004350 1.7e-23 114.0 167 43.1
QL03p029246 Quercus lobata HOM05D003804 ORTHO05D004350 2.2e-23 113.6 211 38.9
Thecc.05G266900 Theobroma cacao HOM05D003804 ORTHO05D004350 2.2e-23 113.6 166 43.4
Ciclev10031149m.g Citrus clementina HOM05D003804 ORTHO05D004350 2.9e-23 113.2 167 40.7
ATR0801G001 Amborella trichopoda HOM05D003804 ORTHO05D004350 4.9e-23 112.5 167 43.7
TAR365G0644 Trochodendron aralioides HOM05D003804 ORTHO05D004350 4.9e-23 112.5 166 43.4
Duzib106G1801 Durio zibethinus HOM05D003804 ORTHO05D004350 8.4e-23 111.7 165 43.0
SalBow3G4606 Salvia bowleyana HOM05D003804 ORTHO05D004350 8.4e-23 111.7 167 43.1
Cfa006383 Carpinus fangiana HOM05D003804 ORTHO05D004350 1.1e-22 111.3 167 43.1
MSTRG.27378 Avicennia marina HOM05D003804 ORTHO05D004350 1.4e-22 110.9 172 41.9
Lsat_1_v5_gn_8_2841 Lactuca sativa HOM05D003804 ORTHO05D004350 1.9e-22 110.5 162 44.4
SGA_v2.0_scaffold111G31426 Striga asiatica HOM05D003804 ORTHO05D004350 3.2e-22 109.8 212 34.0
Lj2A40T58 Lonicera japonica HOM05D003804 ORTHO05D004350 4.2e-22 109.4 170 42.9
SEGI_36765 Sequoiadendron giganteum HOM05D003804 ORTHO05D004350 5.5e-22 109.0 170 42.4
TPR.G26623 Trifolium pratense HOM05D003804 ORTHO05D004350 7.1e-22 108.6 165 41.8
Actinidia40003 Actinidia chinensis HOM05D003804 ORTHO05D004350 9.3e-22 108.2 177 39.5
CiPaw.07G070900 Carya illinoinensis HOM05D003804 ORTHO05D004350 1.2e-21 107.8 210 38.1
Lalb_Chr04g0262141 Lupinus albus HOM05D003804 ORTHO05D004350 1.6e-21 107.5 173 42.8
Lj5g0014193 Lotus japonicus HOM05D003804 ORTHO05D004350 2.1e-21 107.1 167 41.3
Medtr1g080460 Medicago truncatula HOM05D003804 ORTHO05D004350 2.7e-21 106.7 166 42.2
PGR004G0836 Punica granatum HOM05D003804 ORTHO05D004350 3.5e-21 106.3 167 38.9
Migut.F00805 Erythranthe guttata HOM05D003804 ORTHO05D004350 4.6e-21 105.9 211 34.1
Ca_10028_v3 Cicer arietinum L. HOM05D003804 ORTHO05D004350 6.0e-21 105.5 167 41.3
COL.COLO4_15533 Corchorus olitorius HOM05D003804 ORTHO05D004350 6.0e-21 105.5 167 39.5
Psat6g144120 Pisum sativum HOM05D003804 ORTHO05D004350 6.0e-21 105.5 166 40.4
Gohir.D13G172400 Gossypium hirsutum HOM05D003804 ORTHO05D004350 7.9e-21 105.1 163 41.1
MD04G1232600 Malus domestica HOM05D003804 ORTHO05D004350 7.9e-21 105.1 167 42.5
Psat0s3161g0200 Pisum sativum HOM05D003804 ORTHO05D004350 1.0e-20 104.8 166 42.8
Gorai.013G188300 Gossypium raimondii HOM05D003804 ORTHO05D004350 1.8e-20 104.0 163 40.5
Prupe.6G352300 Prunus persica HOM05D003804 ORTHO05D004350 1.8e-20 104.0 167 44.3
Gohir.A13G161600 Gossypium hirsutum HOM05D003804 ORTHO05D004350 2.3e-20 103.6 163 40.5
Medtr7g115460 Medicago truncatula HOM05D003804 ORTHO05D004350 2.3e-20 103.6 166 43.4
VMungo0540G0271 Vigna mungo HOM05D003804 ORTHO05D004350 2.3e-20 103.6 209 35.9
CANSAT56G0982 Cannabis sativa HOM05D003804 ORTHO05D004350 3.0e-20 103.2 173 40.5
PGSC0003DMG400023500 Solanum tuberosum HOM05D003804 ORTHO05D004350 3.0e-20 103.2 211 34.6
ECA233G2677 Erigeron canadensis HOM05D003804 ORTHO05D004350 3.9e-20 102.8 167 42.5
HanXRQChr08g0225481 Helianthus annuus HOM05D003804 ORTHO05D004350 3.9e-20 102.8 167 41.9
Peaxi162Scf00135g00416 Petunia axillaris HOM05D003804 ORTHO05D004350 5.1e-20 102.4 211 34.6
Lalb_Chr06g0168201 Lupinus albus HOM05D003804 ORTHO05D004350 8.7e-20 101.7 167 40.7
ECA238G1424 Erigeron canadensis HOM05D003804 ORTHO05D004350 1.1e-19 101.3 164 39.0
MD12G1250100 Malus domestica HOM05D003804 ORTHO05D004350 1.1e-19 101.3 158 41.1
Sopen05g033500 Solanum pennellii HOM05D003804 ORTHO05D004350 1.5e-19 100.9 167 39.5
arahy.Tifrunner.gnm1.ann1.A208ZV Arachis hypogaea HOM05D003804 ORTHO05D004350 1.9e-19 100.5 166 41.6
arahy.Tifrunner.gnm1.ann1.PMT11X Arachis hypogaea HOM05D003804 ORTHO05D004350 1.9e-19 100.5 166 41.6
TPR.G6978 Trifolium pratense HOM05D003804 ORTHO05D004350 1.9e-19 100.5 166 41.0
Peaxi162Scf00015g03111 Petunia axillaris HOM05D003804 ORTHO05D004350 3.3e-19 99.8 211 33.6
TWI60G0892 Tripterygium wilfordii HOM05D003804 ORTHO05D004350 4.3e-19 99.4 149 41.6
Ah.06g191850 Amaranthus hybridus HOM05D003804 ORTHO05D004350 5.7e-19 99.0 150 40.7
Ca_09447_v3 Cicer arietinum L. HOM05D003804 ORTHO05D004350 5.7e-19 99.0 167 38.9
Duzib177G0700 Durio zibethinus HOM05D003804 ORTHO05D004350 5.7e-19 99.0 160 41.2
Glyma.03G249500 Glycine max HOM05D003804 ORTHO05D004350 5.7e-19 99.0 166 41.0
Glyma.19G247000 Glycine max HOM05D003804 ORTHO05D004350 7.4e-19 98.6 166 40.4
HanXRQChr07g0194371 Helianthus annuus HOM05D003804 ORTHO05D004350 7.4e-19 98.6 171 40.9
Solyc05g055040.3 Solanum lycopersicum HOM05D003804 ORTHO05D004350 7.4e-19 98.6 167 39.5
Haze_04395 Corylus avellana HOM05D003804 ORTHO05D004350 1.3e-18 97.8 167 40.7
CAN.G1465.5 Capsicum annuum HOM05D003804 ORTHO05D004350 2.2e-18 97.1 211 34.6
vmacro10357 Vaccinium macrocarpon HOM05D003804 ORTHO05D004350 2.2e-18 97.1 182 35.2
VMungo0720G0320 Vigna mungo HOM05D003804 ORTHO05D004350 2.2e-18 97.1 167 38.9
Potri.013G049100 Populus trichocarpa HOM05D003804 ORTHO05D004350 2.8e-18 96.7 167 37.7
TWI32G1243 Tripterygium wilfordii HOM05D003804 ORTHO05D004350 2.8e-18 96.7 165 40.6
Sed0018274 Sechium edule HOM05D003804 ORTHO05D004350 3.7e-18 96.3 211 33.6
Nitab4.5_0000687g0070 Nicotiana tabacum HOM05D006502 ORTHO05D004350 4.8e-18 95.9 167 38.9
CDE08G1101 Ceratophyllum demersum HOM05D003804 ORTHO05D004350 6.3e-18 95.5 173 37.6
Oeu012230.1 Olea europaea HOM05D003804 ORTHO05D004350 6.3e-18 95.5 167 38.9
Phvul.006G104100 Phaseolus vulgaris HOM05D003804 ORTHO05D004350 6.3e-18 95.5 167 38.3
RcHm_v2.0_Chr3g0449231 Rosa chinensis HOM05D003804 ORTHO05D004350 6.3e-18 95.5 166 41.0
Sed0002107 Sechium edule HOM05D003804 ORTHO05D004350 8.2e-18 95.1 167 38.3
Carub.0003s0354 Capsella rubella HOM05D003804 ORTHO05D004350 1.1e-17 94.7 211 31.8
Thhalv10013196m.g Eutrema salsugineum HOM05D003804 ORTHO05D004350 1.1e-17 94.7 161 39.1
Os02g0624400 Oryza sativa ssp. japonica HOM05D003804 ORTHO05D004350 1.1e-17 94.7 165 38.2
Os04g0517400 Oryza sativa ssp. japonica HOM05D003804 ORTHO05D004350 1.1e-17 94.7 165 35.2
Sabra13G0045400 Salix brachista HOM05D003804 ORTHO05D004350 1.4e-17 94.4 211 32.2
Sopen04g005060 Solanum pennellii HOM05D003804 ORTHO05D004350 1.8e-17 94.0 211 33.2
Thhalv10020458m.g Eutrema salsugineum HOM05D003804 ORTHO05D004350 2.4e-17 93.6 167 37.1
Solyc04g009920.3 Solanum lycopersicum HOM05D003804 ORTHO05D004350 3.1e-17 93.2 211 33.2
Glyma.20G226800 Glycine max HOM05D003804 ORTHO05D004350 5.3e-17 92.4 172 36.0
ClCG11G010310 Citrullus lanatus HOM05D003804 ORTHO05D004350 6.9e-17 92.0 167 37.1
PGSC0003DMG400011479 Solanum tuberosum HOM05D003804 ORTHO05D004350 6.9e-17 92.0 211 33.6
Sc09g0004190 Simmondsia chinensis HOM05D003804 ORTHO05D004350 9.0e-17 91.7 167 38.9
BcaNung04819 Brassica carinata HOM05D003804 ORTHO05D004350 1.2e-16 91.3 211 31.8
AUR62004854 Chenopodium quinoa HOM05D003804 ORTHO05D004350 1.2e-16 91.3 158 38.0
BolC1t05753H Brassica oleracea HOM05D003804 ORTHO05D004350 1.5e-16 90.9 212 31.6
CARHR194530 Cardamine hirsuta HOM05D003804 ORTHO05D004350 1.5e-16 90.9 161 37.9
BcaC09g47809 Brassica carinata HOM05D003804 ORTHO05D004350 2.0e-16 90.5 211 31.3
CsaV3_2G010010 Cucumis sativus L. HOM05D003804 ORTHO05D004350 2.0e-16 90.5 165 38.2
FAN09G3890 Fragaria x ananassa HOM05D003804 ORTHO05D004350 2.0e-16 90.5 166 39.2
CAN.G1609.2 Capsicum annuum HOM05D003804 ORTHO05D004350 2.6e-16 90.1 211 33.6
FAN02G4114 Fragaria x ananassa HOM05D003804 ORTHO05D004350 2.6e-16 90.1 166 39.2
FAN05G4825 Fragaria x ananassa HOM05D003804 ORTHO05D004350 3.4e-16 89.7 166 38.6
Oeu016029.1 Olea europaea HOM05D003804 ORTHO05D004350 3.4e-16 89.7 161 38.5
CDE02G2550 Ceratophyllum demersum HOM05D003804 ORTHO05D004350 4.5e-16 89.4 171 38.6
Lsat_1_v5_gn_2_107981 Lactuca sativa HOM05D003804 ORTHO05D004350 4.5e-16 89.4 125 48.0
THA.LOC104827281 Tarenaya hassleriana HOM05D003804 ORTHO05D004350 4.5e-16 89.4 167 38.3
AUR62040937 Chenopodium quinoa HOM05D003804 ORTHO05D004350 5.9e-16 89.0 151 38.4
Nitab4.5_0001372g0080 Nicotiana tabacum HOM05D003804 ORTHO05D004350 7.7e-16 88.6 167 37.7
BraA01t04524Z Brassica rapa HOM05D003804 ORTHO05D004350 1.0e-15 88.2 169 35.5
Phvul.007G116100 Phaseolus vulgaris HOM05D003804 ORTHO05D004350 1.0e-15 88.2 172 34.9
Sp3g03220 Schrenkiella parvula HOM05D003804 ORTHO05D004350 1.0e-15 88.2 167 35.9
Sp6g25840 Schrenkiella parvula HOM05D003804 ORTHO05D004350 1.0e-15 88.2 161 37.9
CARHR078510 Cardamine hirsuta HOM05D003804 ORTHO05D004350 1.3e-15 87.8 211 30.8
FAN14G2706 Fragaria x ananassa HOM05D003804 ORTHO05D004350 1.7e-15 87.4 166 38.6
FvH4_6g01530 Fragaria vesca HOM05D003804 ORTHO05D004350 2.2e-15 87.0 166 38.6
FAN14G4672 Fragaria x ananassa HOM05D003804 ORTHO05D004350 2.2e-15 87.0 166 38.6
arahy.Tifrunner.gnm1.ann1.Y446PZ Arachis hypogaea HOM05D003804 ORTHO05D004350 3.8e-15 86.3 129 40.3
A01p40890 Brassica napus HOM05D003804 ORTHO05D004350 3.8e-15 86.3 212 30.7
BNapus_Darmor_BZH_scaffold_78p00820 Brassica napus HOM05D003804 ORTHO05D004350 3.8e-15 86.3 212 30.7
FAN05G4636 Fragaria x ananassa HOM05D003804 ORTHO05D004350 3.8e-15 86.3 166 38.6
Manes.08G141400 Manihot esculenta HOM05D003804 ORTHO05D004350 3.8e-15 86.3 210 31.4
arahy.Tifrunner.gnm1.ann1.Y4X76M Arachis hypogaea HOM05D003804 ORTHO05D004350 5.0e-15 85.9 129 40.3
BcaC03g13603 Brassica carinata HOM05D003804 ORTHO05D004350 5.0e-15 85.9 161 37.9
Nitab4.5_0001268g0010 Nicotiana tabacum HOM05D003804 ORTHO05D004350 5.0e-15 85.9 211 32.2
Nitab4.5_0003768g0060 Nicotiana tabacum HOM05D003804 ORTHO05D004350 5.0e-15 85.9 172 36.0
AT5G18480 Arabidopsis thaliana HOM05D003804 ORTHO05D004350 6.5e-15 85.5 161 38.5
Aa31LG11G11120 Aethionema arabicum HOM05D003804 ORTHO05D004350 8.5e-15 85.1 163 36.8
AL6G29740 Arabidopsis lyrata HOM05D003804 ORTHO05D004350 1.9e-14 84.0 161 37.3
EL10Ac4g09070 Beta vulgaris HOM05D003804 ORTHO05D004350 1.9e-14 84.0 162 37.7
BcaB01g04900 Brassica carinata HOM05D003804 ORTHO05D004350 3.2e-14 83.2 161 35.4
C03p10370 Brassica napus HOM05D003804 ORTHO05D004350 4.2e-14 82.8 163 35.0
BraA03t10215Z Brassica rapa HOM05D003804 ORTHO05D004350 4.2e-14 82.8 163 35.0
Aa31LG5G14820 Aethionema arabicum HOM05D003804 ORTHO05D004350 5.5e-14 82.4 169 35.5
A02p04940 Brassica napus HOM05D003804 ORTHO05D004350 5.5e-14 82.4 163 36.8
A03p08890 Brassica napus HOM05D003804 ORTHO05D004350 5.5e-14 82.4 163 36.2
BcaB05g23331 Brassica carinata HOM05D003804 ORTHO05D004350 7.2e-14 82.0 161 36.6
BraA02t05453Z Brassica rapa HOM05D003804 ORTHO05D004350 9.4e-14 81.6 163 35.6
Carub.0006s1676 Capsella rubella HOM05D003804 ORTHO05D004350 1.2e-13 81.3 161 37.9
Gohir.A11G244900 Gossypium hirsutum HOM05D003804 ORTHO05D004350 1.2e-13 81.3 168 35.7
BolC2t06899H Brassica oleracea HOM05D003804 ORTHO05D004350 1.6e-13 80.9 163 36.8
BolC3t13517H Brassica oleracea HOM05D003804 ORTHO05D004350 2.7e-13 80.1 163 34.4
Hund22153 Selenicereus undatus HOM05D003804 ORTHO05D004350 2.7e-13 80.1 136 39.0
DCAR_023877 Daucus carota HOM05D003804 ORTHO05D004350 7.9e-13 78.6 140 39.3
Mapoly0009s0041 Marchantia polymorpha HOM05D003804 ORTHO05D004350 1.4e-12 77.8 171 33.3
C02p09920 Brassica napus HOM05D003804 ORTHO05D004350 1.8e-12 77.4 163 35.0
Zm00001eb426690 Zea mays HOM05D003804 ORTHO05D004350 1.8e-12 77.4 139 38.8
Pp3c2_32110 Physcomitrium patens HOM05D003804 ORTHO05D004350 3.9e-12 76.3 174 30.5
Atru.chr2.1109 Acer truncatum HOM05D003804 ORTHO05D004350 2.8e-10 70.1 111 38.7
Pp3c1_6500 Physcomitrium patens HOM05D003804 ORTHO05D004350 2.4e-09 67.0 182 28.6
Glyma.10G164501 Glycine max HOM05D003804 ORTHO05D004350 9.1e-09 65.1 56 60.7
SMO364G0002 Selaginella moellendorffii HOM05D003804 ORTHO05D004350 9.1e-09 65.1 146 32.2


User provided reference genes

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