Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 6.7e-262 906.7 442 100.0
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.2e-223 779.6 434 82.9
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 4.4e-221 771.2 436 82.1
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 4.9e-220 767.7 435 81.8
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 3.5e-218 761.5 435 81.8
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 3.9e-217 758.1 440 81.1
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 1.5e-216 756.1 455 79.1
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 3.3e-216 755.0 440 80.5
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.2e-215 753.1 434 80.4
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 3.6e-215 751.5 440 81.1
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 4.7e-215 751.1 437 80.5
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 1.4e-214 749.6 438 78.8
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 3.1e-214 748.4 440 78.2
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 8.9e-214 746.9 435 78.4
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 2.0e-213 745.7 429 80.2
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 3.4e-213 745.0 440 78.4
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 4.4e-213 744.6 434 79.5
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 5.8e-213 744.2 439 78.8
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 7.6e-213 743.8 440 79.1
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 9.9e-213 743.4 440 78.2
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 3.8e-212 741.5 440 80.0
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.8e-212 741.5 434 79.0
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.9e-212 741.1 435 78.9
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.9e-212 741.1 435 78.9
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.4e-211 739.6 433 79.0
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.9e-211 739.2 433 78.5
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 1.9e-211 739.2 434 79.0
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.2e-211 738.0 433 78.5
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 5.4e-211 737.6 434 77.9
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 5.4e-211 737.6 434 78.3
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 7.1e-211 737.3 434 79.3
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.2e-210 736.5 440 77.5
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 2.7e-210 735.3 440 77.7
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 3.5e-210 734.9 433 78.5
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 4.6e-210 734.6 439 78.1
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 6.0e-210 734.2 440 78.4
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 6.0e-210 734.2 439 78.4
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 6.0e-210 734.2 440 77.5
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.0e-209 733.4 433 78.3
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.3e-209 733.0 440 77.7
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.7e-209 732.6 434 77.6
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.7e-209 732.6 429 78.8
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 3.0e-209 731.9 442 77.4
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 3.0e-209 731.9 440 78.2
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 3.0e-209 731.9 440 75.9
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 3.9e-209 731.5 442 77.6
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 5.1e-209 731.1 433 78.3
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 6.6e-209 730.7 435 77.9
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 8.7e-209 730.3 440 76.8
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 8.7e-209 730.3 440 77.5
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.9e-208 729.2 442 76.9
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 3.3e-208 728.4 441 76.9
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 5.6e-208 727.6 440 77.0
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 7.3e-208 727.2 440 76.6
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 9.6e-208 726.9 436 77.3
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 1.2e-207 726.5 433 78.1
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.6e-207 726.1 434 77.4
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 2.1e-207 725.7 436 77.1
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 2.1e-207 725.7 436 77.1
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 2.8e-207 725.3 433 77.8
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 3.6e-207 724.9 435 76.3
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 4.7e-207 724.5 436 76.8
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.1e-206 723.4 433 77.1
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.4e-206 723.0 440 77.7
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 1.8e-206 722.6 433 76.7
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 4.0e-206 721.5 497 69.6
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 5.3e-206 721.1 432 78.0
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 6.9e-206 720.7 432 77.1
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 9.0e-206 720.3 440 77.5
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.2e-205 719.9 440 76.8
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 5.8e-205 717.6 442 76.5
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 1.3e-204 716.5 448 75.4
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.9e-204 715.3 428 77.6
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.9e-204 714.5 444 75.7
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 6.4e-204 714.1 431 76.3
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 4.2e-203 711.4 437 75.7
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.2e-202 709.9 440 75.0
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.2e-202 709.9 434 77.2
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 2.3e-201 705.7 511 68.7
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.5e-200 703.0 470 71.3
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 2.5e-200 702.2 439 73.8
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.3e-200 701.8 426 76.5
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 7.3e-200 700.7 438 74.0
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.1e-198 696.8 433 74.1
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.4e-198 696.4 433 74.1
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.4e-195 686.4 439 72.9
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 5.4e-195 684.5 411 77.9
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 3.5e-194 681.8 526 64.3
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.3e-193 679.1 422 76.5
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.9e-192 676.0 424 73.6
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 4.0e-190 668.3 421 76.0
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.3e-190 667.9 440 70.9
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 9.0e-190 667.2 401 77.1
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 9.0e-190 667.2 433 72.3
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 9.3e-187 657.1 433 70.9
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 2.1e-186 656.0 395 79.5
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.7e-186 655.6 437 69.8
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 1.0e-185 653.7 434 69.4
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.9e-185 651.7 407 74.4
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.5e-184 649.0 433 70.0
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 3.3e-184 648.7 439 68.8
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 4.0e-182 641.7 434 72.4
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.3e-180 636.7 440 68.9
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.9e-179 632.9 426 69.0
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.6e-178 628.2 434 67.3
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.9e-176 622.9 440 65.2
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 3.8e-172 608.6 435 65.1
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 1.4e-171 606.7 340 81.8
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.1e-170 601.3 437 64.3
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 4.1e-166 588.6 330 82.4
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 9.1e-166 587.4 442 63.6
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 4.5e-165 585.1 339 80.2
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 4.5e-165 585.1 343 79.6
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.3e-164 583.6 425 63.1
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 4.2e-163 578.6 442 62.2
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.4e-161 573.5 441 65.5
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 3.3e-160 568.9 358 76.0
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 9.1e-158 560.8 385 70.1
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.6e-154 548.9 438 62.1
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 3.0e-145 519.2 305 78.4
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 8.8e-145 517.7 426 57.7
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.5e-141 505.8 337 69.4
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.2e-139 498.8 350 67.4
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.1e-131 474.2 386 63.2
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 4.4e-128 462.2 431 51.3
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 4.0e-105 386.0 352 56.2
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.6e-101 374.0 240 72.5
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 8.6e-100 368.2 225 76.0
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 3.3e-91 339.7 231 69.7
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.9e-79 300.1 197 78.2
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 9.6e-75 285.0 194 68.6
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.4e-70 271.2 158 80.4
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.4e-70 271.2 149 81.9
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 5.0e-63 246.1 145 78.6
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.8e-58 230.3 134 79.9
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.0e-56 224.2 236 52.1
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.5e-51 207.2 113 84.1
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.4e-49 201.4 107 81.3
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.0e-40 171.0 138 63.8
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.4e-33 147.5 88 75.0
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.1e-33 146.7 93 73.1
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.7e-31 141.4 166 47.0
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.1e-30 138.7 82 80.5
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 2.0e-27 127.9 204 34.8
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.2e-23 114.4 242 34.7
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 2.9e-23 114.0 67 71.6
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.5e-22 111.7 83 61.4
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 9.8e-19 99.0 57 73.7
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 2.2e-18 97.8 63 74.6
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-17 95.5 73 56.2
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.5e-14 85.1 119 43.7
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 9.8e-11 72.4 36 80.6
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 2.2e-10 71.2 38 76.3
Gohir.D01G181400 Gossypium hirsutum HOM05D002051 ORTHO05D002041 4.9e-10 70.1 388 24.0
Gorai.002G221000 Gossypium raimondii HOM05D002051 ORTHO05D002041 1.1e-09 68.9 388 24.0
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 2.4e-09 67.8 69 53.6
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 5.4e-09 66.6 46 60.9
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 7.8e-08 62.8 98 37.8
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 3.9e-07 60.5 277 25.6


User provided reference genes

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