Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.6e-118 429.5 218 100.0
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 3.2e-39 166.0 206 49.5
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 9.3e-39 164.5 217 44.7
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 7.9e-38 161.4 211 48.3
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 7.9e-38 161.4 211 48.3
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 2.3e-37 159.8 208 48.6
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 5.1e-37 158.7 211 46.0
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.1e-36 157.5 206 48.5
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 2.5e-36 156.4 210 45.7
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 3.3e-36 156.0 213 46.0
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.3e-36 156.0 200 48.5
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 4.3e-36 155.6 213 44.6
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 4.3e-36 155.6 221 43.0
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 9.7e-36 154.5 226 42.5
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 9.7e-36 154.5 214 43.0
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.3e-35 154.1 224 44.6
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.6e-35 153.7 213 43.7
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.8e-35 152.9 212 43.4
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 2.8e-35 152.9 216 42.1
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 3.7e-35 152.5 217 46.5
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 3.7e-35 152.5 212 46.7
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 3.7e-35 152.5 212 45.3
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 3.7e-35 152.5 211 45.0
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 8.2e-35 151.4 208 44.2
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 8.2e-35 151.4 221 45.7
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 8.2e-35 151.4 228 43.4
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 8.2e-35 151.4 223 47.5
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.1e-34 151.0 223 48.0
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.1e-34 151.0 207 46.4
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.8e-34 150.2 211 45.5
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.8e-34 150.2 211 42.7
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.8e-34 150.2 226 41.6
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.8e-34 150.2 211 44.5
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.8e-34 150.2 226 41.6
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.8e-34 150.2 217 43.3
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 4.1e-34 149.1 206 45.6
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.1e-34 149.1 210 44.3
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 5.3e-34 148.7 213 44.1
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 6.9e-34 148.3 216 42.6
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 6.9e-34 148.3 211 45.0
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 6.9e-34 148.3 211 45.0
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 9.1e-34 147.9 223 41.3
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.5e-33 147.1 211 45.0
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.5e-33 147.1 216 43.1
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-33 147.1 223 42.2
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.0e-33 146.7 206 43.7
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.0e-33 146.7 223 41.3
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.6e-33 146.4 225 43.1
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.6e-33 146.4 222 41.9
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.6e-33 146.4 213 43.2
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.6e-33 146.4 213 43.2
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 4.5e-33 145.6 223 44.8
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 5.9e-33 145.2 212 44.3
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.9e-33 145.2 213 43.2
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 5.9e-33 145.2 217 42.9
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 7.7e-33 144.8 212 44.8
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 7.7e-33 144.8 230 43.0
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.7e-33 144.8 203 41.9
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.7e-33 144.8 219 45.2
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.0e-32 144.4 205 44.4
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.3e-32 144.1 208 44.2
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.3e-32 144.1 218 44.5
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 1.3e-32 144.1 201 46.3
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.3e-32 144.1 208 44.2
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.3e-32 144.1 207 44.4
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.7e-32 143.7 211 44.1
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.7e-32 143.7 222 44.1
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.7e-32 143.7 203 43.8
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 2.2e-32 143.3 217 41.0
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 2.2e-32 143.3 218 42.7
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.9e-32 142.9 209 44.0
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 2.9e-32 142.9 214 43.0
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.9e-32 142.9 210 44.3
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 5.0e-32 142.1 215 42.8
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 5.0e-32 142.1 208 42.3
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 5.0e-32 142.1 227 43.2
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 6.5e-32 141.7 219 42.5
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 6.5e-32 141.7 217 41.5
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 6.5e-32 141.7 205 44.4
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 8.5e-32 141.4 205 43.4
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.1e-31 141.0 206 45.1
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.1e-31 141.0 206 43.7
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.1e-31 141.0 212 45.3
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.1e-31 141.0 206 43.7
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.1e-31 141.0 210 41.9
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 1.9e-31 140.2 220 43.6
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 2.5e-31 139.8 211 45.0
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.5e-31 139.8 210 46.7
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.5e-31 139.8 226 41.6
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 4.2e-31 139.0 222 43.2
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 4.2e-31 139.0 212 42.5
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 5.5e-31 138.7 225 41.3
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 7.2e-31 138.3 222 42.3
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 9.4e-31 137.9 230 42.2
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.2e-30 137.5 202 45.0
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.2e-30 137.5 157 49.0
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-30 137.5 203 42.4
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.2e-30 137.5 211 46.0
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 3.6e-30 136.0 228 39.5
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 3.6e-30 136.0 212 42.5
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 4.6e-30 135.6 208 40.4
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.1e-30 135.2 214 45.3
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 7.9e-30 134.8 200 42.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.0e-29 134.4 222 39.2
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.4e-29 134.0 223 41.7
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.8e-29 133.7 152 47.4
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.0e-29 132.9 186 44.1
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.9e-29 132.5 195 42.1
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 6.7e-29 131.7 223 40.8
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 6.7e-29 131.7 224 39.7
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 8.8e-29 131.3 162 46.9
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.5e-28 130.6 214 39.7
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.4e-28 129.0 148 46.6
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 4.4e-28 129.0 208 40.4
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 5.7e-28 128.6 218 37.2
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.3e-27 127.5 160 46.9
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 2.2e-27 126.7 198 40.9
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 6.3e-27 125.2 225 38.2
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 5.3e-26 122.1 153 46.4
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 9.1e-26 121.3 217 38.7
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.2e-25 120.9 221 41.6
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 5.9e-25 118.6 205 41.5
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.8e-24 115.9 194 39.2
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 5.0e-24 115.5 120 49.2
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 6.5e-24 115.2 199 37.7
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.4e-23 114.0 144 46.5
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 4.2e-23 112.5 191 40.3
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 4.2e-23 112.5 165 44.2
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.0e-21 106.3 86 59.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 3.3e-20 102.8 107 46.7
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 3.3e-20 102.8 113 49.6
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 7.4e-20 101.7 143 42.7
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 2.8e-19 99.8 146 41.8
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.8e-18 97.1 112 45.5
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.8e-18 97.1 90 51.1
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 4.1e-18 95.9 69 63.8
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.6e-17 94.0 221 32.1
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 3.5e-17 92.8 102 48.0
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.7e-16 90.5 88 48.9
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 3.8e-16 89.4 97 50.5
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 8.5e-16 88.2 97 44.3
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.6e-14 84.0 154 35.7
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 4.7e-14 82.4 89 49.4
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.7e-14 82.4 101 41.6
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 8.0e-14 81.6 88 46.6
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.0e-13 79.7 112 38.4
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.6e-09 67.4 125 44.8
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.0e-09 67.0 125 44.8
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 8.5e-08 61.6 32 65.6
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.5e-07 60.8 120 36.7
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 9.4e-07 58.2 122 34.4


User provided reference genes

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