Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 7.5e-175 617.1 309 100.0
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 7.6e-103 377.9 306 61.1
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 1.1e-101 374.0 310 61.3
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 2.0e-95 353.2 310 58.4
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 1.0e-94 350.9 311 58.2
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 2.9e-94 349.4 308 59.7
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 3.5e-92 342.4 306 56.9
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 1.0e-91 340.9 308 57.5
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 1.3e-91 340.5 306 53.6
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 1.8e-91 340.1 307 52.8
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 2.3e-91 339.7 306 56.9
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 2.3e-91 339.7 308 56.2
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 2.5e-90 336.3 310 55.8
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 4.3e-90 335.5 321 55.8
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 7.4e-90 334.7 311 54.0
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 1.6e-89 333.6 310 54.2
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 4.8e-89 332.0 306 54.6
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 6.3e-89 331.6 311 53.7
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 8.2e-89 331.3 306 55.2
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 1.4e-88 330.5 306 54.9
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 2.4e-88 329.7 306 55.2
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 2.4e-88 329.7 311 53.4
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 3.1e-88 329.3 302 54.3
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 5.9e-87 325.1 304 53.3
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 1.0e-86 324.3 306 53.9
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 1.7e-86 323.6 306 53.9
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 3.8e-86 322.4 306 53.6
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 5.0e-86 322.0 306 53.6
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 6.5e-86 321.6 307 51.1
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 8.5e-86 321.2 308 52.6
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 1.9e-85 320.1 302 54.3
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 2.5e-85 319.7 306 52.0
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 5.5e-85 318.5 306 53.3
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 5.5e-85 318.5 306 52.0
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.1e-84 316.6 306 52.9
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.7e-84 316.2 306 52.9
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 2.3e-83 313.2 304 52.3
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 3.9e-83 312.4 308 51.6
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 2.5e-82 309.7 310 53.2
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 2.5e-82 309.7 295 52.2
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 3.3e-82 309.3 305 50.8
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.7e-81 307.0 308 52.3
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 2.8e-81 306.2 305 51.1
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 3.7e-81 305.8 308 50.6
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 3.7e-81 305.8 306 51.3
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.8e-80 303.5 306 51.0
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 1.8e-80 303.5 430 42.3
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 2.4e-80 303.1 305 49.2
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 2.4e-80 303.1 306 51.0
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 4.1e-80 302.4 336 50.9
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 9.1e-80 301.2 305 49.8
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 1.5e-79 300.4 304 52.0
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 1.5e-79 300.4 304 52.0
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 3.4e-79 299.3 274 56.2
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 3.4e-79 299.3 308 50.6
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 4.5e-79 298.9 305 49.5
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 4.5e-79 298.9 301 50.2
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 1.0e-78 297.7 308 49.4
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 1.3e-78 297.4 306 50.0
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 1.3e-78 297.4 356 46.6
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 1.3e-78 297.4 306 49.0
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 1.7e-78 297.0 295 51.2
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 2.9e-78 296.2 297 53.9
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 3.8e-78 295.8 307 49.8
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 1.9e-77 293.5 312 47.8
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 2.5e-77 293.1 306 49.7
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 2.5e-77 293.1 305 49.2
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 7.2e-77 291.6 305 49.2
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 1.6e-76 290.4 305 48.2
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 2.1e-76 290.0 310 48.4
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 5.1e-75 285.4 309 48.2
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 8.8e-75 284.6 305 48.2
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 5.7e-74 282.0 302 49.0
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 7.4e-74 281.6 304 47.0
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 1.7e-73 280.4 305 48.5
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 2.9e-70 269.6 361 43.2
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 6.1e-68 261.9 309 44.0
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 8.0e-68 261.5 315 43.8
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 1.8e-67 260.4 309 43.4
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 6.7e-67 258.5 309 43.4
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 6.7e-67 258.5 309 43.4
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 2.6e-66 256.5 309 42.4
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 3.3e-66 256.1 237 55.3
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 1.3e-65 254.2 309 42.1
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 4.8e-65 252.3 291 43.0
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 5.3e-64 248.8 294 42.9
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 2.0e-63 246.9 237 49.8
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 1.7e-62 243.8 309 40.1
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 2.2e-62 243.4 309 40.1
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.2e-62 243.4 269 48.3
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.1e-61 241.1 269 47.6
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 1.9e-61 240.4 244 52.5
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 2.5e-61 240.0 292 44.2
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 4.2e-61 239.2 251 49.4
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 1.2e-58 231.1 222 55.0
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 5.7e-58 228.8 324 42.3
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 1.3e-54 217.6 222 50.0
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 1.0e-51 208.0 228 48.2
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 2.0e-50 203.8 239 46.0
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 1.2e-47 194.5 177 56.5
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 9.5e-45 184.9 243 38.7
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 7.5e-42 175.3 298 32.9
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 6.8e-35 152.1 241 39.0
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 4.6e-31 139.4 271 28.0
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 2.5e-29 133.7 111 58.6
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 4.3e-21 106.3 112 45.5
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 2.9e-17 93.6 64 62.5
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 3.0e-14 83.6 63 58.7
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 6.6e-14 82.4 67 59.7
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 8.6e-14 82.0 67 59.7
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 4.3e-13 79.7 63 55.6
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 2.9e-09 67.0 63 54.0


User provided reference genes

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