Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.7e-268 927.5 448 100.0
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.0e-241 839.7 458 91.5
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.5e-184 649.8 448 69.9
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.4e-182 642.5 450 67.6
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 2.0e-181 639.4 453 68.7
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 5.9e-181 637.9 454 67.2
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.3e-180 636.0 454 66.3
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.3e-180 636.0 454 66.3
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 8.6e-180 634.0 455 67.5
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 2.5e-179 632.5 453 67.3
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 9.5e-179 630.6 454 67.2
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.6e-178 629.8 453 67.5
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.6e-178 629.8 450 67.1
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 3.6e-178 628.6 451 67.0
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.4e-177 626.7 451 67.0
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 2.3e-177 625.9 450 66.7
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 3.0e-177 625.5 450 66.9
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 5.2e-177 624.8 402 72.6
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 8.9e-177 624.0 447 68.2
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 5.7e-176 621.3 446 66.1
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 7.5e-176 620.9 454 66.3
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 9.8e-176 620.5 448 67.0
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 9.8e-176 620.5 448 65.0
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.3e-175 620.2 450 66.2
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.7e-175 618.6 468 65.2
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 3.7e-175 618.6 448 64.7
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 6.3e-175 617.8 450 66.7
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 8.3e-175 617.5 455 64.8
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 5.4e-174 614.8 450 66.7
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 4.5e-173 611.7 451 64.3
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 4.5e-173 611.7 398 69.6
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 4.5e-173 611.7 408 70.8
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 4.5e-173 611.7 455 64.0
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 5.9e-173 611.3 431 67.7
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 1.0e-172 610.5 446 65.7
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 2.9e-172 609.0 450 65.8
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 5.0e-172 608.2 447 65.3
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 8.6e-172 607.4 430 68.6
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.5e-171 606.7 431 66.6
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.5e-171 606.7 431 68.2
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 3.3e-171 605.5 453 65.1
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 5.6e-171 604.7 431 68.0
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 9.5e-171 604.0 448 64.5
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 2.1e-170 602.8 431 67.1
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 2.8e-170 602.4 432 67.8
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.4e-169 600.1 448 65.2
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.3e-169 599.4 447 65.3
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 4.0e-169 598.6 457 64.1
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 6.8e-169 597.8 455 62.9
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.5e-168 596.7 379 72.8
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.4e-168 595.5 454 63.9
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 4.4e-168 595.1 447 65.1
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.9e-167 591.7 441 64.6
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.4e-166 589.3 405 66.9
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 7.0e-166 587.8 445 63.1
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.2e-165 587.0 441 65.1
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 2.0e-165 586.3 451 63.9
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 4.6e-165 585.1 436 64.7
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 7.8e-165 584.3 401 68.3
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.7e-164 583.2 401 68.1
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.7e-164 583.2 401 68.1
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.7e-164 583.2 451 64.1
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.3e-164 582.8 445 62.7
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.5e-163 579.3 401 67.6
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 5.6e-163 578.2 424 65.8
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 5.6e-163 578.2 445 62.0
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.6e-162 576.6 461 61.6
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.4e-161 573.5 456 61.4
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.4e-161 573.5 436 63.5
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 6.8e-161 571.2 451 62.3
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.2e-160 570.5 457 61.5
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.6e-160 569.3 462 61.0
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 9.8e-160 567.4 451 62.7
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 9.2e-158 560.8 416 64.4
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 4.6e-157 558.5 403 64.5
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.3e-156 557.0 451 59.6
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 3.0e-156 555.8 402 64.2
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 6.6e-156 554.7 454 57.9
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.1e-155 553.9 402 64.7
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.9e-155 553.1 395 67.1
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.3e-155 552.4 456 61.2
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 5.6e-155 551.6 416 61.8
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.6e-154 550.1 402 63.7
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.1e-153 547.4 450 60.4
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 3.1e-153 545.8 404 62.6
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.2e-152 543.9 403 63.3
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.2e-152 543.9 403 63.3
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 4.4e-152 542.0 489 56.4
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 5.8e-152 541.6 456 58.1
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 2.2e-151 539.7 391 66.0
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 2.9e-151 539.3 403 62.5
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.9e-151 539.3 483 57.3
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 4.9e-151 538.5 438 59.1
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 4.9e-151 538.5 438 59.1
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 4.1e-150 535.4 405 61.5
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 7.1e-150 534.6 457 59.5
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 7.1e-150 534.6 412 60.7
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.0e-148 530.8 380 67.1
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 4.3e-147 525.4 384 63.0
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.8e-145 520.0 446 56.3
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.2e-144 517.3 406 60.3
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 2.6e-144 516.2 408 63.7
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.1e-142 510.8 409 63.3
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.5e-139 500.4 384 61.5
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 5.6e-139 498.4 385 61.6
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 9.6e-139 497.7 381 64.6
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.1e-138 496.5 361 66.5
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 2.6e-136 489.6 358 64.2
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 1.0e-132 477.6 404 54.7
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.0e-132 477.6 401 56.6
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 2.3e-132 476.5 531 49.5
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 3.9e-132 475.7 408 54.2
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.1e-129 467.6 470 52.3
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 9.0e-129 464.5 413 54.2
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 2.7e-125 453.0 413 55.9
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 6.0e-125 451.8 405 56.5
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 2.7e-117 426.4 398 53.5
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 2.3e-116 423.3 290 69.0
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 2.8e-114 416.4 290 69.0
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 2.2e-111 406.8 348 56.3
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.8e-111 406.0 355 55.5
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.4e-110 404.1 294 65.3
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 6.5e-103 378.6 409 49.4
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.4e-100 370.9 380 51.8
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 5.3e-97 359.0 433 46.0
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 6.7e-92 342.0 235 69.8
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 8.8e-92 341.7 384 44.5
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 8.5e-87 325.1 383 43.6
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.1e-86 324.7 437 41.4
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 5.5e-86 322.4 329 52.6
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 9.7e-75 285.0 280 54.6
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 3.5e-72 276.6 213 63.8
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 6.8e-68 262.3 201 62.2
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-61 241.5 171 68.4
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 7.8e-56 222.2 222 55.9
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.2e-51 208.4 196 53.6
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 7.5e-51 205.7 119 74.8
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.9e-46 191.0 182 54.4
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 2.5e-38 164.1 109 68.8
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.3e-38 163.7 155 54.2
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.2e-36 156.4 241 41.9
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.8e-36 156.0 239 42.3
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 5.4e-33 146.4 104 67.3
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 6.0e-32 142.9 231 35.5
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 6.6e-31 139.4 94 71.3
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 4.6e-24 116.7 155 43.2
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.0e-23 114.0 239 35.6
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.5e-22 110.9 85 62.4
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 3.6e-21 107.1 71 62.0
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 4.8e-21 106.7 62 75.8
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 3.5e-16 90.5 70 64.3
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.1e-14 85.5 114 38.6
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 3.4e-11 73.9 61 62.3
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.6e-08 65.1 79 46.8
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.9e-07 60.5 41 61.0
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.1e-07 60.1 36 72.2


User provided reference genes

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