Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001554 Vanilla planifolia HOM05D003124 ORTHO05D003831 7.8e-42 173.3 85 100.0
HPP92_003327 Vanilla planifolia HOM05D003124 ORTHO05D003831 1.4e-35 152.5 78 92.3
HPP92_003336 Vanilla planifolia HOM05D003124 ORTHO05D003831 1.4e-35 152.5 78 92.3
Zm00001eb102400 Zea mays HOM05D003124 ORTHO05D003831 8.7e-33 143.3 78 85.9
Zm00001eb317720 Zea mays HOM05D003124 ORTHO05D003831 3.3e-32 141.4 78 84.6
Os09g0505600 Oryza sativa ssp. japonica HOM05D003124 ORTHO05D003831 1.3e-31 139.4 78 82.1
HPP92_003304 Vanilla planifolia HOM05D003124 ORTHO05D003831 9.0e-30 133.3 81 85.2
Ciclev10022119m.g Citrus clementina HOM05D003124 ORTHO05D003831 9.3e-27 123.2 70 81.4
MBI12_g10756_MAGBIO Magnolia biondii HOM05D003124 ORTHO05D003831 1.2e-26 122.9 70 81.4
Dinv43712 Davidia involucrata HOM05D003124 ORTHO05D003831 2.1e-26 122.1 70 80.0
Duzib138G1909 Durio zibethinus HOM05D003124 ORTHO05D003831 2.1e-26 122.1 70 78.6
Duzib133G0737 Durio zibethinus HOM05D003124 ORTHO05D003831 2.7e-26 121.7 70 78.6
Gohir.A07G145500 Gossypium hirsutum HOM05D003124 ORTHO05D003831 2.7e-26 121.7 70 77.1
Gohir.D07G151700 Gossypium hirsutum HOM05D003124 ORTHO05D003831 2.7e-26 121.7 70 77.1
Gorai.001G173600 Gossypium raimondii HOM05D003124 ORTHO05D003831 2.7e-26 121.7 70 77.1
Lj7A528T56 Lonicera japonica HOM05D003124 ORTHO05D003831 2.7e-26 121.7 70 80.0
Cfa003809 Carpinus fangiana HOM05D003124 ORTHO05D003831 3.5e-26 121.3 70 80.0
COL.COLO4_12550 Corchorus olitorius HOM05D003124 ORTHO05D003831 3.5e-26 121.3 70 78.6
Haze_15645 Corylus avellana HOM05D003124 ORTHO05D003831 3.5e-26 121.3 70 80.0
Haze_16817 Corylus avellana HOM05D003124 ORTHO05D003831 3.5e-26 121.3 70 80.0
MBI04_g35277_MAGBIO Magnolia biondii HOM05D003124 ORTHO05D003831 3.5e-26 121.3 70 80.0
Cfa001719 Carpinus fangiana HOM05D003124 ORTHO05D003831 4.6e-26 120.9 70 78.6
Thecc.01G376000 Theobroma cacao HOM05D003124 ORTHO05D003831 4.6e-26 120.9 70 77.1
GSVIVG01027613001 Vitis vinifera HOM05D003124 ORTHO05D003831 4.6e-26 120.9 70 77.1
Gohir.A08G031200 Gossypium hirsutum HOM05D003124 ORTHO05D003831 6.0e-26 120.6 70 77.1
Gorai.004G040900 Gossypium raimondii HOM05D003124 ORTHO05D003831 6.0e-26 120.6 70 77.1
Aqoxy5G00263 Aquilegia oxysepala HOM05D003124 ORTHO05D003831 1.0e-25 119.8 70 78.6
CSS0021281 Camellia sinensis var. sinensis HOM05D003124 ORTHO05D003831 1.3e-25 119.4 70 77.1
Os08g0529100 Oryza sativa ssp. japonica HOM05D003124 ORTHO05D003831 1.3e-25 119.4 71 78.9
Actinidia12259 Actinidia chinensis HOM05D003124 ORTHO05D003831 1.8e-25 119.0 79 72.2
CiPaw.01G261800 Carya illinoinensis HOM05D003124 ORTHO05D003831 1.8e-25 119.0 70 77.1
Gohir.D08G042300 Gossypium hirsutum HOM05D003124 ORTHO05D003831 1.8e-25 119.0 70 75.7
Manes.05G045100 Manihot esculenta HOM05D003124 ORTHO05D003831 1.8e-25 119.0 70 78.6
Nitab4.5_0003001g0030 Nicotiana tabacum HOM05D003124 ORTHO05D003831 2.3e-25 118.6 70 78.6
Hma1.2p1_0033F.1_g021050 Hydrangea macrophylla HOM05D003124 ORTHO05D003831 3.0e-25 118.2 70 77.1
CsaV3_3G009670 Cucumis sativus L. HOM05D003124 ORTHO05D003831 3.9e-25 117.9 70 78.6
Manes.01G265800 Manihot esculenta HOM05D003124 ORTHO05D003831 3.9e-25 117.9 70 77.1
TAR636G1572 Trochodendron aralioides HOM05D003124 ORTHO05D003831 3.9e-25 117.9 70 78.6
Nitab4.5_0000344g0130 Nicotiana tabacum HOM05D003124 ORTHO05D003831 5.1e-25 117.5 70 77.1
Nitab4.5_0005626g0010 Nicotiana tabacum HOM05D003124 ORTHO05D003831 5.1e-25 117.5 70 77.1
Prupe.2G145800 Prunus persica HOM05D003124 ORTHO05D003831 5.1e-25 117.5 70 77.1
Zm00001eb036440 Zea mays HOM05D003124 ORTHO05D003831 5.1e-25 117.5 70 75.7
CDE12G0228 Ceratophyllum demersum HOM05D003124 ORTHO05D003831 6.7e-25 117.1 70 77.1
CDE04G3268 Ceratophyllum demersum HOM05D003124 ORTHO05D003831 8.7e-25 116.7 70 77.1
Ciclev10032692m.g Citrus clementina HOM05D003124 ORTHO05D003831 8.7e-25 116.7 70 78.6
Nitab4.5_0008224g0020 Nicotiana tabacum HOM05D003124 ORTHO05D003831 8.7e-25 116.7 70 77.1
PGSC0003DMG400022569 Solanum tuberosum HOM05D003124 ORTHO05D003831 8.7e-25 116.7 69 79.7
Actinidia12689 Actinidia chinensis HOM05D003124 ORTHO05D003831 1.1e-24 116.3 70 77.1
Eucgr.E01416 Eucalyptus grandis HOM05D003124 ORTHO05D003831 1.1e-24 116.3 70 78.6
MD02G1204000 Malus domestica HOM05D003124 ORTHO05D003831 1.1e-24 116.3 69 78.3
MD07G1122000 Malus domestica HOM05D003124 ORTHO05D003831 1.1e-24 116.3 69 78.3
CSS0005196 Camellia sinensis var. sinensis HOM05D003124 ORTHO05D003831 1.5e-24 115.9 70 77.1
CSS0011728 Camellia sinensis var. sinensis HOM05D003124 ORTHO05D003831 1.5e-24 115.9 70 77.1
GSVIVG01000943001 Vitis vinifera HOM05D003124 ORTHO05D003831 1.5e-24 115.9 76 68.4
CAN.G358.42 Capsicum annuum HOM05D003124 ORTHO05D003831 1.9e-24 115.5 70 74.3
CiPaw.02G167600 Carya illinoinensis HOM05D003124 ORTHO05D003831 1.9e-24 115.5 70 77.1
MELO3C006187.2 Cucumis melo HOM05D003124 ORTHO05D003831 1.9e-24 115.5 69 78.3
PSO017G2820 Papaver somniferum HOM05D003124 ORTHO05D003831 1.9e-24 115.5 70 72.9
PSO782G4266 Papaver somniferum HOM05D003124 ORTHO05D003831 1.9e-24 115.5 70 72.9
Peaxi162Scf00008g03318 Petunia axillaris HOM05D003124 ORTHO05D003831 1.9e-24 115.5 70 74.3
Rhsim07G0027400 Rhododendron simsii HOM05D003124 ORTHO05D003831 1.9e-24 115.5 79 69.6
Sed0026826 Sechium edule HOM05D003124 ORTHO05D003831 1.9e-24 115.5 69 78.3
Solyc02g084920.3 Solanum lycopersicum HOM05D003124 ORTHO05D003831 1.9e-24 115.5 70 74.3
Sopen02g029590 Solanum pennellii HOM05D003124 ORTHO05D003831 1.9e-24 115.5 70 74.3
PGSC0003DMG400003524 Solanum tuberosum HOM05D003124 ORTHO05D003831 1.9e-24 115.5 70 74.3
EL10Ac1g00896 Beta vulgaris HOM05D003124 ORTHO05D003831 2.5e-24 115.2 70 75.7
ClCG05G002210 Citrullus lanatus HOM05D003124 ORTHO05D003831 2.5e-24 115.2 69 78.3
Glyma.08G286200 Glycine max HOM05D003124 ORTHO05D003831 2.5e-24 115.2 70 75.7
Glyma.18G138900 Glycine max HOM05D003124 ORTHO05D003831 2.5e-24 115.2 70 75.7
HanXRQChr03g0093901 Helianthus annuus HOM05D003124 ORTHO05D003831 2.5e-24 115.2 70 75.7
HanXRQChr13g0425221 Helianthus annuus HOM05D003124 ORTHO05D003831 2.5e-24 115.2 70 75.7
AUR62013630 Chenopodium quinoa HOM05D003124 ORTHO05D003831 3.3e-24 114.8 70 75.7
AagrBONN_evm.TU.Sc2ySwM_228.3283 Anthoceros agrestis HOM05D003124 ORTHO05D003831 4.3e-24 114.4 70 75.7
CAN.G1019.4 Capsicum annuum HOM05D003124 ORTHO05D003831 4.3e-24 114.4 70 72.9
AUR62004218 Chenopodium quinoa HOM05D003124 ORTHO05D003831 4.3e-24 114.4 70 75.7
ECA234G3821 Erigeron canadensis HOM05D003124 ORTHO05D003831 4.3e-24 114.4 70 75.7
Nitab4.5_0000136g0220 Nicotiana tabacum HOM05D003124 ORTHO05D003831 4.3e-24 114.4 70 72.9
Nitab4.5_0001525g0010 Nicotiana tabacum HOM05D003124 ORTHO05D003831 4.3e-24 114.4 70 72.9
Potri.014G069800 Populus trichocarpa HOM05D003124 ORTHO05D003831 4.3e-24 114.4 70 74.3
Atru.chr10.1178 Acer truncatum HOM05D003124 ORTHO05D003831 5.6e-24 114.0 70 74.3
SGA_v2.0_scaffold43G16475 Striga asiatica HOM05D003124 ORTHO05D003831 5.6e-24 114.0 70 77.1
vmacro21007 Vaccinium macrocarpon HOM05D003124 ORTHO05D003831 5.6e-24 114.0 70 75.7
VMungo0251G2852 Vigna mungo HOM05D003124 ORTHO05D003831 5.6e-24 114.0 70 74.3
arahy.Tifrunner.gnm1.ann1.FA29PG Arachis hypogaea HOM05D003124 ORTHO05D003831 7.4e-24 113.6 70 74.3
arahy.Tifrunner.gnm1.ann1.GL64VW Arachis hypogaea HOM05D003124 ORTHO05D003831 7.4e-24 113.6 70 74.3
Cpa.g.sc349.3 Carica papaya HOM05D003124 ORTHO05D003831 7.4e-24 113.6 70 75.7
Lsat_1_v5_gn_3_132000 Lactuca sativa HOM05D003124 ORTHO05D003831 7.4e-24 113.6 70 74.3
PGR102G2215 Punica granatum HOM05D003124 ORTHO05D003831 7.4e-24 113.6 70 72.9
vmacro13398 Vaccinium macrocarpon HOM05D003124 ORTHO05D003831 7.4e-24 113.6 70 74.3
Cc07_g09940 Coffea canephora HOM05D003124 ORTHO05D003831 9.6e-24 113.2 70 72.9
Lalb_Chr12g0208271 Lupinus albus HOM05D003124 ORTHO05D003831 9.6e-24 113.2 70 75.7
QL08p052463 Quercus lobata HOM05D003124 ORTHO05D003831 9.6e-24 113.2 69 75.4
Ca_06661_v3 Cicer arietinum L. HOM05D003124 ORTHO05D003831 1.3e-23 112.8 69 76.8
Ca_19907_v3 Cicer arietinum L. HOM05D003124 ORTHO05D003831 1.3e-23 112.8 69 75.4
Lalb_Chr07g0189781 Lupinus albus HOM05D003124 ORTHO05D003831 1.3e-23 112.8 70 75.7
Medtr2g098010 Medicago truncatula HOM05D003124 ORTHO05D003831 1.3e-23 112.8 69 76.8
Medtr5g079740 Medicago truncatula HOM05D003124 ORTHO05D003831 1.3e-23 112.8 69 76.8
PSO478G4914 Papaver somniferum HOM05D003124 ORTHO05D003831 1.3e-23 112.8 70 70.0
TPR.G3493 Trifolium pratense HOM05D003124 ORTHO05D003831 1.3e-23 112.8 69 76.8
TPR.G6863 Trifolium pratense HOM05D003124 ORTHO05D003831 1.3e-23 112.8 69 76.8
Ah.05g174150 Amaranthus hybridus HOM05D003124 ORTHO05D003831 1.6e-23 112.5 70 72.9
Ah.10g025390 Amaranthus hybridus HOM05D003124 ORTHO05D003831 1.6e-23 112.5 70 72.9
CANSAT56G3211 Cannabis sativa HOM05D003124 ORTHO05D003831 1.6e-23 112.5 70 70.0
Lsat_1_v5_gn_4_40961 Lactuca sativa HOM05D003124 ORTHO05D003831 1.6e-23 112.5 70 74.3
Sc23g0003550 Simmondsia chinensis HOM05D003124 ORTHO05D003831 1.6e-23 112.5 70 75.7
VMungo0464G0735 Vigna mungo HOM05D003124 ORTHO05D003831 1.6e-23 112.5 70 74.3
BcaC02g10187 Brassica carinata HOM05D003124 ORTHO05D003831 2.1e-23 112.1 70 77.1
A04p01400 Brassica napus HOM05D003124 ORTHO05D003831 2.1e-23 112.1 70 77.1
C04p31790 Brassica napus HOM05D003124 ORTHO05D003831 2.1e-23 112.1 70 77.1
BolC4t24727H Brassica oleracea HOM05D003124 ORTHO05D003831 2.1e-23 112.1 70 77.1
BraA04t15859Z Brassica rapa HOM05D003124 ORTHO05D003831 2.1e-23 112.1 70 77.1
DCAR_006866 Daucus carota HOM05D003124 ORTHO05D003831 2.1e-23 112.1 69 76.8
BcaC08g45086 Brassica carinata HOM05D003124 ORTHO05D003831 2.8e-23 111.7 70 77.1
A07p25220 Brassica napus HOM05D003124 ORTHO05D003831 2.8e-23 111.7 70 77.1
C06p26930 Brassica napus HOM05D003124 ORTHO05D003831 2.8e-23 111.7 70 77.1
BolC6t37867H Brassica oleracea HOM05D003124 ORTHO05D003831 2.8e-23 111.7 70 77.1
BraA07t30164Z Brassica rapa HOM05D003124 ORTHO05D003831 2.8e-23 111.7 70 77.1
Pp3c16_16960 Physcomitrium patens HOM05D003124 ORTHO05D003831 2.8e-23 111.7 70 72.9
Psat5g271920 Pisum sativum HOM05D003124 ORTHO05D003831 2.8e-23 111.7 69 75.4
Sed0009819 Sechium edule HOM05D003124 ORTHO05D003831 2.8e-23 111.7 69 75.4
Oeu064467.1 Olea europaea HOM05D003124 ORTHO05D003831 3.7e-23 111.3 72 73.6
Pp3c27_2640 Physcomitrium patens HOM05D003124 ORTHO05D003831 4.8e-23 110.9 70 72.9
ATR0712G143 Amborella trichopoda HOM05D003124 ORTHO05D003831 6.2e-23 110.5 70 72.9
MSTRG.28187 Avicennia marina HOM05D003124 ORTHO05D003831 6.2e-23 110.5 70 71.4
BcaB02g07399 Brassica carinata HOM05D003124 ORTHO05D003831 8.2e-23 110.2 70 75.7
BcaC07g40603 Brassica carinata HOM05D003124 ORTHO05D003831 8.2e-23 110.2 70 75.7
A09p53080 Brassica napus HOM05D003124 ORTHO05D003831 8.2e-23 110.2 70 75.7
C08p35780 Brassica napus HOM05D003124 ORTHO05D003831 8.2e-23 110.2 70 75.7
BolC8t51168H Brassica oleracea HOM05D003124 ORTHO05D003831 8.2e-23 110.2 70 75.7
BraA09t40734Z Brassica rapa HOM05D003124 ORTHO05D003831 8.2e-23 110.2 70 75.7
Cc02_g36680 Coffea canephora HOM05D003124 ORTHO05D003831 8.2e-23 110.2 70 74.3
Sp5g02430 Schrenkiella parvula HOM05D003124 ORTHO05D003831 8.2e-23 110.2 70 75.7
Hund17019 Selenicereus undatus HOM05D003124 ORTHO05D003831 8.2e-23 110.2 70 71.4
SGA_v2.0_scaffold11G05585 Striga asiatica HOM05D003124 ORTHO05D003831 8.2e-23 110.2 70 75.7
unitig_748.g8185 Utricularia gibba HOM05D003124 ORTHO05D003831 8.2e-23 110.2 76 68.4
Aa31LG10G15060 Aethionema arabicum HOM05D003124 ORTHO05D003831 1.1e-22 109.8 70 74.3
Carub.0005s2757 Capsella rubella HOM05D003124 ORTHO05D003831 1.1e-22 109.8 70 74.3
Lj3g0012915 Lotus japonicus HOM05D003124 ORTHO05D003831 1.1e-22 109.8 70 72.9
TWI23G0395 Tripterygium wilfordii HOM05D003124 ORTHO05D003831 1.1e-22 109.8 70 72.9
MSTRG.17194 Avicennia marina HOM05D003124 ORTHO05D003831 1.4e-22 109.4 70 71.4
MSTRG.17195 Avicennia marina HOM05D003124 ORTHO05D003831 1.4e-22 109.4 70 71.4
CARHR171210 Cardamine hirsuta HOM05D003124 ORTHO05D003831 1.4e-22 109.4 70 74.3
Migut.B01636 Erythranthe guttata HOM05D003124 ORTHO05D003831 1.4e-22 109.4 70 72.9
Mapoly0019s0015 Marchantia polymorpha HOM05D003124 ORTHO05D003831 1.4e-22 109.4 67 74.6
TWI59G1020 Tripterygium wilfordii HOM05D003124 ORTHO05D003831 1.4e-22 109.4 70 72.9
Potri.002G148300 Populus trichocarpa HOM05D003124 ORTHO05D003831 1.8e-22 109.0 70 71.4
Sabra02G0115700 Salix brachista HOM05D003124 ORTHO05D003831 1.8e-22 109.0 70 71.4
Sabra02G0117400 Salix brachista HOM05D003124 ORTHO05D003831 1.8e-22 109.0 70 71.4
AL5G43140 Arabidopsis lyrata HOM05D003124 ORTHO05D003831 2.4e-22 108.6 70 72.9
AT3G60820 Arabidopsis thaliana HOM05D003124 ORTHO05D003831 2.4e-22 108.6 70 72.9
Ca_19905_v3 Cicer arietinum L. HOM05D003124 ORTHO05D003831 2.4e-22 108.6 69 73.9
Sabra14G0049500 Salix brachista HOM05D003124 ORTHO05D003831 2.4e-22 108.6 70 71.4
BcaC07g42643 Brassica carinata HOM05D003124 ORTHO05D003831 3.1e-22 108.2 70 74.3
Sc02g0002570 Simmondsia chinensis HOM05D003124 ORTHO05D003831 5.3e-22 107.5 70 74.3
THA.LOC104817248 Tarenaya hassleriana HOM05D003124 ORTHO05D003831 9.0e-22 106.7 70 74.3
THA.LOC104802445 Tarenaya hassleriana HOM05D003124 ORTHO05D003831 1.2e-21 106.3 70 72.9
SMO114G0021 Selaginella moellendorffii HOM05D003124 ORTHO05D003831 1.5e-21 105.9 68 72.1
SMO298G0001 Selaginella moellendorffii HOM05D003124 ORTHO05D003831 1.5e-21 105.9 68 72.1
RcHm_v2.0_Chr1g0350601 Rosa chinensis HOM05D003124 ORTHO05D003831 3.4e-21 104.8 70 70.0
FAN03G3077 Fragaria x ananassa HOM05D003124 ORTHO05D003831 1.0e-20 103.2 67 73.1
Thhalv10006409m.g Eutrema salsugineum HOM05D003124 ORTHO05D003831 1.3e-20 102.8 72 70.8
FvH4_7g11920 Fragaria vesca HOM05D003124 ORTHO05D003831 1.7e-20 102.4 70 68.6
CBR_g21847 Chara braunii HOM05D003124 ORTHO05D003831 2.2e-20 102.1 70 71.4
FAN01G2692 Fragaria x ananassa HOM05D003124 ORTHO05D003831 1.4e-19 99.4 64 73.4
FAN06G2068 Fragaria x ananassa HOM05D003124 ORTHO05D003831 1.4e-19 99.4 64 73.4
FAN06G3432 Fragaria x ananassa HOM05D003124 ORTHO05D003831 1.4e-19 99.4 64 73.4
FAN10G0051 Fragaria x ananassa HOM05D003124 ORTHO05D003831 1.4e-19 99.4 64 73.4
FAN10G2702 Fragaria x ananassa HOM05D003124 ORTHO05D003831 1.4e-19 99.4 64 73.4
SalBow5G5391 Salvia bowleyana HOM05D003124 ORTHO05D003831 1.9e-19 99.0 64 75.0
Phvul.003G030301 Phaseolus vulgaris HOM05D003124 ORTHO05D003831 5.5e-19 97.4 69 71.0
unitig_32.g10932 Utricularia gibba HOM05D003124 ORTHO05D003831 9.3e-19 96.7 62 74.2
Atru.chr5.311 Acer truncatum HOM05D003124 ORTHO05D003831 7.9e-18 93.6 60 71.7
Oeu005784.1 Olea europaea HOM05D003124 ORTHO05D003831 1.0e-17 93.2 90 55.6
Oeu037914.1 Olea europaea HOM05D003124 ORTHO05D003831 6.7e-17 90.5 104 50.0
MCO07G216 Micromonas commoda HOM05D003124 ORTHO05D003831 8.7e-17 90.1 73 58.9
Dinv32379 Davidia involucrata HOM05D003124 ORTHO05D003831 2.5e-16 88.6 60 73.3
Aqoxy7G03170 Aquilegia oxysepala HOM05D003124 ORTHO05D003831 9.7e-16 86.7 50 80.0
Actinidia33464 Actinidia chinensis HOM05D003124 ORTHO05D003831 4.8e-15 84.3 78 60.3
Cre26.g756797 Chlamydomonas reinhardtii HOM05D003124 ORTHO05D003831 3.1e-14 81.6 70 52.9
PRCOL_00006833 Prasinoderma coloniale HOM05D003124 ORTHO05D003831 8.5e-12 73.6 64 53.1
Phvul.003G061000 Phaseolus vulgaris HOM05D003124 ORTHO05D003831 2.1e-10 68.9 45 73.3
Haze_26390 Corylus avellana HOM05D003124 ORTHO05D003831 6.7e-09 63.9 67 44.8
BolC1t03897H Brassica oleracea HOM05D003124 ORTHO05D041156 2.2e-07 58.9 40 72.5


User provided reference genes

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