Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 7.3e-234 813.5 415 100.0
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.9e-125 453.4 387 64.3
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 3.6e-124 449.1 389 63.2
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 6.2e-124 448.4 396 60.1
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 6.2e-124 448.4 355 66.5
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 8.1e-124 448.0 385 62.6
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.3e-123 446.4 361 65.7
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 8.9e-123 444.5 390 61.5
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 8.9e-123 444.5 390 61.5
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.0e-122 443.4 381 61.2
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.6e-122 443.0 406 61.6
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 7.5e-122 441.4 391 62.1
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 7.5e-122 441.4 391 62.4
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 2.4e-120 436.4 391 60.6
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 4.1e-120 435.6 401 59.1
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 4.1e-120 435.6 401 59.4
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.1e-119 433.3 389 59.9
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 3.5e-119 432.6 376 59.6
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 4.6e-119 432.2 398 58.8
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 7.8e-119 431.4 397 59.2
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 6.6e-118 428.3 354 65.3
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 6.6e-118 428.3 384 61.2
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 8.6e-118 427.9 380 61.6
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 8.6e-118 427.9 358 63.4
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 8.6e-118 427.9 404 58.9
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.9e-117 426.8 400 58.0
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.9e-117 426.8 378 59.5
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.3e-117 426.0 378 60.3
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 9.5e-117 424.5 401 57.9
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.2e-116 424.1 397 57.7
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.2e-116 424.1 386 58.5
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.6e-116 423.7 397 59.2
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 2.8e-116 422.9 403 57.8
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.6e-116 422.5 386 58.3
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 6.2e-116 421.8 399 58.6
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 6.2e-116 421.8 403 57.8
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 8.1e-116 421.4 397 57.2
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 4.0e-115 419.1 394 56.9
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 5.2e-115 418.7 380 59.5
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 8.9e-115 417.9 378 59.3
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 1.5e-114 417.2 374 59.1
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.5e-114 417.2 394 58.1
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.5e-114 417.2 414 56.5
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 7.6e-114 414.8 372 59.7
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 7.6e-114 414.8 404 58.4
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 1.7e-113 413.7 416 57.0
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 4.9e-113 412.1 398 56.5
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.9e-112 410.2 396 58.1
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 2.4e-112 409.8 405 57.0
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 5.4e-112 408.7 402 58.5
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 1.2e-111 407.5 403 56.6
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 3.5e-111 406.0 399 56.4
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 7.8e-111 404.8 354 61.9
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 2.3e-110 403.3 303 67.7
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 3.9e-110 402.5 394 57.4
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 6.6e-110 401.7 364 59.1
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 8.6e-110 401.4 376 56.6
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.5e-109 400.6 402 55.5
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.9e-109 400.2 391 56.5
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 2.5e-109 399.8 396 56.3
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 4.3e-109 399.1 399 56.1
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 5.6e-109 398.7 405 54.3
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 9.6e-109 397.9 388 56.7
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.2e-108 397.5 373 58.7
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 2.1e-108 396.7 351 60.4
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 2.8e-108 396.4 404 55.9
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 2.8e-108 396.4 359 57.7
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.4e-107 394.0 417 52.3
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.4e-107 394.0 319 63.9
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 1.8e-107 393.7 373 57.9
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.4e-107 393.3 399 54.4
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.4e-107 393.3 402 53.5
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.1e-107 392.9 402 53.5
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 4.0e-107 392.5 416 52.9
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 5.2e-107 392.1 373 57.1
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 5.2e-107 392.1 390 55.1
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 6.9e-107 391.7 387 54.3
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 6.9e-107 391.7 403 53.6
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 6.9e-107 391.7 403 52.9
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 8.9e-107 391.3 399 54.9
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.2e-106 391.0 374 56.4
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 3.4e-106 389.4 356 59.6
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 5.8e-106 388.7 302 66.2
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 5.8e-106 388.7 415 52.5
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 5.8e-106 388.7 371 57.1
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 7.6e-106 388.3 385 56.4
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 9.9e-106 387.9 400 55.0
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 9.9e-106 387.9 405 54.3
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 2.9e-105 386.3 407 52.8
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 4.9e-105 385.6 392 56.4
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 4.9e-105 385.6 389 55.3
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.1e-104 384.4 384 56.2
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-103 380.6 385 53.5
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 4.6e-103 379.0 389 53.7
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 6.0e-103 378.6 388 53.1
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 6.0e-103 378.6 301 63.5
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.3e-102 377.5 423 50.4
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 3.0e-102 376.3 350 58.9
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 3.9e-102 375.9 386 53.6
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.9e-101 373.6 402 51.5
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 2.8e-100 369.8 401 51.1
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 6.2e-100 368.6 397 54.7
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 6.2e-100 368.6 326 58.9
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 6.2e-100 368.6 339 58.1
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 8.1e-100 368.2 402 51.0
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 8.1e-100 368.2 402 51.0
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 8.1e-100 368.2 397 54.2
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 1.4e-99 367.5 326 58.6
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.8e-99 367.1 391 54.5
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 4.0e-99 365.9 401 50.6
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 4.0e-99 365.9 397 54.4
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 6.9e-99 365.2 332 58.1
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 9.0e-99 364.8 381 51.7
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 6.4e-97 358.6 465 47.1
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 5.4e-96 355.5 404 49.3
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 7.1e-96 355.1 381 50.7
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.5e-95 352.8 372 51.1
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 3.0e-94 349.7 357 51.0
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 5.1e-94 349.0 364 52.7
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 8.7e-94 348.2 319 57.4
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 4.0e-91 339.3 420 46.7
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.2e-90 337.8 415 47.7
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.0e-90 337.0 391 51.4
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 1.7e-89 334.0 414 46.1
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.9e-89 333.2 342 55.0
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 4.2e-88 329.3 274 58.4
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 3.5e-87 326.2 260 63.5
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.8e-86 323.9 385 50.9
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.1e-83 313.2 428 45.3
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 4.5e-82 309.3 403 43.7
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 2.3e-78 297.0 397 44.1
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 4.3e-77 292.7 358 46.6
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 5.7e-77 292.4 358 47.5
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.7e-76 289.7 213 65.7
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 8.2e-76 288.5 359 47.4
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 5.3e-75 285.8 352 47.2
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 6.9e-75 285.4 353 46.7
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 9.0e-75 285.0 353 46.7
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 1.5e-74 284.3 357 46.5
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 2.0e-74 283.9 355 47.0
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 2.0e-74 283.9 336 46.4
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 3.4e-74 283.1 347 46.7
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 3.4e-74 283.1 459 39.0
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 5.9e-74 282.3 351 45.6
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 3.8e-73 279.6 225 63.6
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.6e-71 274.2 235 58.7
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 9.1e-67 258.5 384 43.0
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 2.0e-61 240.7 256 51.6
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 7.2e-56 222.2 321 41.4
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 2.8e-52 210.3 155 68.4
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.6e-50 203.8 439 35.3
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 5.0e-41 172.9 137 62.0
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-39 167.9 194 46.4
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.1e-39 167.5 125 62.4
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 5.7e-37 159.5 114 70.2
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 5.7e-37 159.5 114 70.2
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 2.3e-30 137.5 166 48.2
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.2e-29 135.2 94 68.1
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 1.3e-28 131.7 117 61.5
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 4.7e-23 113.2 90 62.2
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 6.1e-23 112.8 119 50.4
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-22 111.7 90 60.0
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 1.4e-22 111.7 90 60.0
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 5.2e-22 109.8 97 56.7
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.6e-21 107.5 72 72.2
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.9e-20 104.0 133 47.4
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.6e-18 98.2 101 48.5
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 3.9e-17 93.6 96 58.3
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 5.6e-16 89.7 174 35.6
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 3.1e-14 84.0 126 46.8
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 1.3e-12 78.6 54 64.8
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-12 78.6 54 64.8
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 1.7e-12 78.2 200 31.5
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 6.4e-12 76.3 123 43.9
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 2.4e-11 74.3 49 71.4
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 2.8e-07 60.8 193 31.1
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 2.8e-07 60.8 39 74.4
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 4.7e-07 60.1 39 74.4
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 2.3e-06 57.8 110 31.8


User provided reference genes

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