Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 0.0e+00 2612.8 1613 100.0
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 1.1e-80 306.6 1707 34.0
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.8e-78 299.3 1856 32.5
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 8.9e-78 297.0 1732 30.5
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 8.4e-76 290.4 1725 31.8
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 8.4e-76 290.4 1725 31.8
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 8.4e-76 290.4 1725 31.8
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.3e-73 283.1 243 60.9
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 2.3e-73 282.3 170 77.6
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 5.1e-73 281.2 171 74.9
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 6.6e-73 280.8 242 59.5
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 6.6e-73 280.8 242 59.5
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 8.6e-73 280.4 1814 33.0
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 1.5e-72 279.6 245 59.6
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 1.5e-72 279.6 245 59.2
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.9e-72 279.3 172 74.4
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 2.5e-72 278.9 171 74.3
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 5.6e-72 277.7 161 78.3
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 5.6e-72 277.7 241 58.5
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 5.6e-72 277.7 170 76.5
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 7.3e-72 277.3 171 73.7
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 9.6e-72 276.9 164 77.4
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 9.6e-72 276.9 164 77.4
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 9.6e-72 276.9 162 76.5
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 9.6e-72 276.9 169 73.4
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 9.6e-72 276.9 160 76.9
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.2e-71 276.6 161 78.3
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.2e-71 276.6 171 73.7
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 3.6e-71 275.0 1742 30.3
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 1.1e-70 273.5 1756 30.0
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.1e-70 273.5 171 72.5
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 1.1e-70 273.5 242 57.9
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 1.8e-70 272.7 171 72.5
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 1.8e-70 272.7 161 76.4
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 2.4e-70 272.3 1748 32.2
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 2.4e-70 272.3 187 66.8
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 2.4e-70 272.3 171 73.1
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 3.1e-70 271.9 163 75.5
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 3.1e-70 271.9 163 75.5
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 5.2e-70 271.2 1866 33.2
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 6.9e-70 270.8 169 71.0
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 6.9e-70 270.8 1807 34.3
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 1.2e-69 270.0 169 74.0
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 1.2e-69 270.0 146 82.2
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.6e-69 268.9 166 74.1
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 3.4e-69 268.5 237 57.8
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 4.4e-69 268.1 169 71.6
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 4.4e-69 268.1 163 74.8
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 9.9e-69 266.9 1713 32.0
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 1.3e-68 266.5 1735 31.8
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 2.2e-68 265.8 1695 33.8
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 2.9e-68 265.4 1723 31.6
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 3.8e-68 265.0 166 73.5
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 6.4e-68 264.2 169 69.8
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 2.4e-67 262.3 164 75.6
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 2.4e-67 262.3 1677 28.5
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 4.2e-67 261.5 140 81.4
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 5.4e-67 261.2 164 73.2
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 7.1e-67 260.8 172 71.5
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 1.6e-66 259.6 170 70.6
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 4.6e-66 258.1 162 73.5
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 6.0e-66 257.7 170 69.4
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.3e-65 256.5 170 69.4
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 6.6e-65 254.2 1769 33.5
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 2.5e-64 252.3 1728 28.9
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 3.3e-64 251.9 175 65.1
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 9.6e-64 250.4 1637 31.9
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.8e-62 246.1 1821 31.9
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 2.4e-62 245.7 1678 28.4
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 3.1e-62 245.4 1733 32.0
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 9.0e-62 243.8 165 66.7
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 3.4e-61 241.9 170 67.6
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.3e-60 240.0 1656 29.9
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 1.3e-60 240.0 1727 33.4
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 2.2e-60 239.2 153 70.6
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 3.8e-60 238.4 170 67.1
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 3.8e-60 238.4 1669 31.0
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 6.4e-60 237.7 140 74.3
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 1.2e-58 233.4 1690 28.3
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 1.8e-57 229.6 1703 33.5
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 8.7e-57 227.3 170 58.8
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 2.8e-55 222.2 1667 29.3
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 4.0e-54 218.4 1692 32.1
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 2.6e-53 215.7 141 63.1
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 2.9e-52 212.2 1688 29.2
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 2.9e-52 212.2 1673 32.8
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 7.1e-51 207.6 167 58.7
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 1.3e-47 196.8 174 58.6
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.2e-43 182.2 98 79.6
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 9.3e-43 180.6 1147 26.0
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 6.0e-42 177.9 103 68.9
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 1.3e-41 176.8 1699 29.6
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 8.2e-39 167.5 151 55.6
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 1.8e-38 166.4 161 50.9
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 1.0e-36 160.6 183 47.5
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 1.3e-36 160.2 191 44.5
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 4.2e-35 155.2 135 56.3
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 1.3e-31 143.7 87 71.3
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 6.5e-28 131.3 72 79.2
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 6.5e-28 131.3 72 79.2
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 2.6e-24 119.4 535 27.9
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 2.2e-23 116.3 557 28.4
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 4.8e-23 115.2 71 69.0
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 7.7e-21 107.8 591 28.8
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 8.5e-20 104.4 101 51.5
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 2.5e-19 102.8 396 28.8
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 5.5e-19 101.7 96 56.2
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 2.1e-18 99.8 109 47.7
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 2.3e-17 96.3 97 51.5
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 3.0e-17 95.9 131 43.5
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 3.9e-17 95.5 138 43.5
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.3e-16 92.4 974 23.9
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 3.7e-15 89.0 1160 24.1
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 6.3e-15 88.2 129 38.0
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 2.4e-14 86.3 140 27.9
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 1.6e-13 83.6 62 62.9
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 4.5e-13 82.0 131 32.1
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 4.5e-13 82.0 115 33.9
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 5.9e-13 81.6 114 35.1
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 7.7e-13 81.3 1267 24.2
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 1.9e-11 76.6 96 34.4
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 4.2e-11 75.5 1017 23.0
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 2.7e-10 72.8 90 46.7
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 5.2e-09 68.6 1125 25.4
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 5.2e-09 68.6 62 53.2
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 5.2e-09 68.6 55 52.7
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 2.0e-08 66.6 96 34.4
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.3e-07 63.9 48 62.5


User provided reference genes

Program Settings