Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.3e-74 281.6 136 100.0
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.5e-23 113.2 71 81.7
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.6e-12 76.6 84 52.4
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.6e-12 76.6 84 52.4
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.6e-12 76.6 79 54.4
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.6e-12 76.6 84 52.4
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.6e-12 76.6 84 52.4
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 2.7e-12 75.9 63 61.9
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.7e-12 75.9 63 61.9
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.7e-12 75.9 63 61.9
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 7.9e-12 74.3 70 51.4
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.0e-11 73.9 66 54.5
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.8e-11 73.2 54 66.7
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 1.8e-11 73.2 63 57.1
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 2.3e-11 72.8 52 69.2
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 3.0e-11 72.4 65 50.8
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 3.0e-11 72.4 75 50.7
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 3.9e-11 72.0 75 49.3
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.9e-11 72.0 52 67.3
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 8.8e-11 70.9 70 50.0
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 1.1e-10 70.5 70 50.0
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.1e-10 70.5 80 46.2
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 1.5e-10 70.1 56 58.9
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 2.0e-10 69.7 76 51.3
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 2.0e-10 69.7 61 50.8
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 2.0e-10 69.7 61 54.1
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 2.0e-10 69.7 47 68.1
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 2.0e-10 69.7 79 43.0
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 2.6e-10 69.3 60 51.7
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 2.6e-10 69.3 75 45.3
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 4.4e-10 68.6 66 50.0
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 4.4e-10 68.6 66 50.0
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 4.4e-10 68.6 59 49.2
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 4.4e-10 68.6 46 67.4
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 4.4e-10 68.6 56 62.5
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 4.4e-10 68.6 51 58.8
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.4e-10 68.6 60 55.0
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 5.7e-10 68.2 75 48.0
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 5.7e-10 68.2 70 47.1
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 5.7e-10 68.2 60 50.0
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 5.7e-10 68.2 70 47.1
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 5.7e-10 68.2 60 50.0
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 5.7e-10 68.2 70 47.1
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 5.7e-10 68.2 60 50.0
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 5.7e-10 68.2 62 50.0
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 7.4e-10 67.8 70 48.6
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 7.4e-10 67.8 60 50.0
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 7.4e-10 67.8 70 48.6
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 7.4e-10 67.8 52 63.5
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 7.4e-10 67.8 75 48.0
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 7.4e-10 67.8 51 64.7
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 9.7e-10 67.4 52 65.4
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 9.7e-10 67.4 53 54.7
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 9.7e-10 67.4 62 48.4
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 9.7e-10 67.4 59 49.2
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 9.7e-10 67.4 70 47.1
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 9.7e-10 67.4 70 50.0
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 9.7e-10 67.4 46 67.4
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 1.3e-09 67.0 60 53.3
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 1.7e-09 66.6 59 52.5
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 1.7e-09 66.6 51 56.9
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 1.7e-09 66.6 59 49.2
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 2.2e-09 66.2 76 46.1
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 2.2e-09 66.2 52 59.6
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 2.2e-09 66.2 53 54.7
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 2.8e-09 65.9 60 51.7
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 2.8e-09 65.9 51 64.7
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 2.8e-09 65.9 71 47.9
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.8e-09 65.9 62 51.6
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 2.8e-09 65.9 66 51.5
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 2.8e-09 65.9 60 53.3
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.8e-09 65.9 52 61.5
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 3.7e-09 65.5 51 62.7
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 4.8e-09 65.1 58 55.2
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 4.8e-09 65.1 59 52.5
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 6.3e-09 64.7 71 46.5
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 6.3e-09 64.7 74 40.5
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 8.2e-09 64.3 68 50.0
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 8.2e-09 64.3 61 50.8
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 8.2e-09 64.3 60 48.3
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 8.2e-09 64.3 52 61.5
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 8.2e-09 64.3 52 61.5
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 8.2e-09 64.3 47 61.7
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 8.2e-09 64.3 51 62.7
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 8.2e-09 64.3 75 49.3
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.1e-08 63.9 60 48.3
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 1.1e-08 63.9 60 48.3
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 1.4e-08 63.5 62 51.6
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 1.4e-08 63.5 60 46.7
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 1.8e-08 63.2 60 51.7
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 1.8e-08 63.2 75 46.7
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 1.8e-08 63.2 60 46.7
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 1.8e-08 63.2 51 62.7
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 1.8e-08 63.2 51 62.7
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 2.4e-08 62.8 52 57.7
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 2.4e-08 62.8 60 51.7
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 2.4e-08 62.8 60 50.0
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 3.1e-08 62.4 66 48.5
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.1e-08 62.4 50 68.0
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 4.1e-08 62.0 61 47.5
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 4.1e-08 62.0 61 47.5
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 4.1e-08 62.0 60 48.3
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 5.3e-08 61.6 60 46.7
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 5.3e-08 61.6 60 46.7
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 5.3e-08 61.6 56 51.8
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 5.3e-08 61.6 67 47.8
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 5.3e-08 61.6 62 48.4
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 5.3e-08 61.6 58 56.9
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 5.3e-08 61.6 58 50.0
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 7.0e-08 61.2 61 47.5
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 7.0e-08 61.2 60 50.0
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 7.0e-08 61.2 56 60.7
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 7.0e-08 61.2 68 48.5
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 9.1e-08 60.8 61 49.2
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 9.1e-08 60.8 61 49.2
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 9.1e-08 60.8 47 57.4
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 9.1e-08 60.8 66 48.5
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 9.1e-08 60.8 60 45.0
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 9.1e-08 60.8 54 61.1
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.5e-07 60.1 51 54.9
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 1.5e-07 60.1 45 64.4
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 2.0e-07 59.7 61 47.5
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 2.0e-07 59.7 61 47.5
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 2.0e-07 59.7 56 60.7
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 2.0e-07 59.7 56 60.7
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 2.6e-07 59.3 60 55.0
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 2.6e-07 59.3 50 58.0
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 3.4e-07 58.9 43 60.5
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.4e-07 58.9 72 48.6
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 4.5e-07 58.5 52 59.6
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 4.5e-07 58.5 59 50.8
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 5.9e-07 58.2 61 45.9
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 5.9e-07 58.2 55 54.5
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 7.7e-07 57.8 59 45.8
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 1.0e-06 57.4 54 53.7
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 1.0e-06 57.4 57 52.6
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 1.3e-06 57.0 52 57.7
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 1.3e-06 57.0 46 56.5
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.7e-06 56.6 52 51.9
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.9e-06 55.8 59 44.1
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 2.9e-06 55.8 52 51.9
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 2.9e-06 55.8 55 49.1
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 5.0e-06 55.1 45 55.6
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 5.0e-06 55.1 45 51.1
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 6.5e-06 54.7 59 44.1
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 6.5e-06 54.7 58 44.8
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 8.5e-06 54.3 55 45.5


User provided reference genes

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