Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 3.3e-169 598.2 284 100.0
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 9.4e-140 500.4 279 82.1
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 3.6e-139 498.4 279 82.1
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 1.0e-138 496.9 281 81.5
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 1.0e-138 496.9 282 80.1
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 1.0e-138 496.9 280 82.1
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 1.0e-138 496.9 279 82.4
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.8e-138 496.1 279 81.4
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 8.8e-138 493.8 282 81.2
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 8.8e-138 493.8 280 81.4
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.1e-137 493.4 279 81.4
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 3.3e-137 491.9 279 79.9
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 3.3e-137 491.9 278 80.6
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 4.3e-137 491.5 281 81.5
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 5.7e-137 491.1 279 79.9
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 5.7e-137 491.1 280 80.7
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.2e-136 489.2 280 81.1
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 2.2e-136 489.2 280 81.1
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 2.2e-136 489.2 279 79.9
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 2.2e-136 489.2 279 79.9
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 3.7e-136 488.4 279 81.0
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 1.1e-135 486.9 279 80.3
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.1e-135 486.9 280 80.0
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.1e-135 486.9 279 81.0
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 1.4e-135 486.5 279 79.2
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 1.8e-135 486.1 281 80.8
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 1.8e-135 486.1 279 79.9
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 1.8e-135 486.1 284 79.2
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 2.4e-135 485.7 279 79.9
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 5.3e-135 484.6 280 80.4
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 6.9e-135 484.2 280 79.6
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 9.1e-135 483.8 280 79.6
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 1.2e-134 483.4 280 81.1
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 1.2e-134 483.4 282 80.9
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 1.2e-134 483.4 282 80.9
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 1.2e-134 483.4 282 80.9
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 1.2e-134 483.4 280 79.3
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 1.5e-134 483.0 281 80.8
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.5e-134 483.0 276 80.8
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 1.5e-134 483.0 280 79.3
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 2.0e-134 482.6 280 78.2
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 3.4e-134 481.9 280 79.3
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 3.4e-134 481.9 279 78.9
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 4.5e-134 481.5 282 80.1
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 4.5e-134 481.5 280 78.2
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 7.7e-134 480.7 279 78.5
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 7.7e-134 480.7 279 78.5
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 1.3e-133 479.9 282 79.1
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.7e-133 479.6 281 79.7
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 2.2e-133 479.2 280 79.3
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 2.2e-133 479.2 280 79.3
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 3.8e-133 478.4 281 77.9
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 3.8e-133 478.4 280 77.1
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 3.8e-133 478.4 280 80.4
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 5.0e-133 478.0 279 79.2
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 5.0e-133 478.0 283 77.0
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 8.5e-133 477.2 280 77.5
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 8.5e-133 477.2 280 80.7
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.1e-132 476.9 280 77.9
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 1.4e-132 476.5 282 79.8
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.9e-132 476.1 282 78.0
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 2.5e-132 475.7 284 76.1
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 2.5e-132 475.7 279 79.2
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 3.2e-132 475.3 285 77.9
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 7.2e-132 474.2 275 79.6
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 9.4e-132 473.8 277 79.1
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 1.6e-131 473.0 277 77.6
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 1.6e-131 473.0 280 78.2
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 2.1e-131 472.6 280 76.8
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 2.7e-131 472.2 297 75.1
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 3.6e-131 471.9 279 77.8
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 3.6e-131 471.9 280 77.9
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 6.1e-131 471.1 277 79.1
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 6.1e-131 471.1 277 78.7
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 7.9e-131 470.7 279 77.1
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 7.9e-131 470.7 277 76.2
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 1.8e-130 469.5 279 76.3
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 2.3e-130 469.2 295 76.3
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 2.3e-130 469.2 279 77.8
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 3.0e-130 468.8 277 77.6
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 3.9e-130 468.4 276 77.5
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 5.1e-130 468.0 278 75.9
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 6.7e-130 467.6 277 77.6
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 8.8e-130 467.2 277 78.0
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 8.8e-130 467.2 277 76.9
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 8.8e-130 467.2 277 76.9
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.5e-129 466.5 283 77.4
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 2.0e-129 466.1 277 76.2
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 2.0e-129 466.1 277 77.3
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 2.0e-129 466.1 279 75.6
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 2.6e-129 465.7 273 79.5
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 3.3e-129 465.3 280 75.7
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 4.4e-129 464.9 277 77.6
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 9.7e-129 463.8 277 76.5
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 3.7e-128 461.8 276 77.9
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 3.7e-128 461.8 276 77.9
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 4.8e-128 461.5 280 75.7
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 6.3e-128 461.1 277 76.5
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 2.4e-127 459.1 277 77.3
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 7.0e-127 457.6 277 77.3
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 9.1e-127 457.2 270 75.9
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.2e-126 456.8 281 76.5
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 4.5e-126 454.9 280 75.4
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 1.7e-125 453.0 331 67.1
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 1.8e-122 443.0 279 74.6
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 5.2e-122 441.4 280 71.4
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 1.5e-121 439.9 280 73.6
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 3.2e-116 422.2 237 80.2
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 5.5e-116 421.4 281 68.7
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 2.1e-115 419.5 244 80.3
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 4.7e-115 418.3 279 67.7
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.8e-114 416.4 234 81.6
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 8.8e-114 414.1 280 72.1
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 6.3e-112 407.9 283 65.0
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 5.4e-111 404.8 272 70.2
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 2.9e-109 399.1 283 67.1
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 2.2e-104 382.9 222 81.1
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 8.3e-104 380.9 280 63.6
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 1.0e-98 364.0 219 76.7
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 5.4e-95 351.7 193 83.4
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 2.5e-92 342.8 287 58.2
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 2.5e-84 316.2 271 60.1
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 1.8e-82 310.1 286 54.9
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 1.2e-78 297.4 172 82.0
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 4.6e-78 295.4 166 83.1
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 2.4e-71 273.1 260 50.4
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 2.1e-67 260.0 279 47.3
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 2.4e-63 246.5 275 46.9
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 5.4e-63 245.4 230 53.9
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 2.3e-61 240.0 282 47.9
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 3.3e-44 183.0 124 69.4
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 1.1e-39 167.9 101 73.3
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 8.8e-21 105.1 77 67.5
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 2.9e-16 90.1 61 70.5
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 1.4e-13 81.3 52 73.1
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 2.6e-09 67.0 53 54.7


User provided reference genes

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