Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001421 Vanilla planifolia HOM05D006503 ORTHO05D008116 1.7e-223 780.0 801 100.0
HPP92_001414 Vanilla planifolia HOM05D006503 ORTHO05D008116 3.2e-217 759.2 802 98.6
Os09g0110200 Oryza sativa ssp. japonica HOM05D006503 ORTHO05D008116 2.0e-46 191.8 315 54.9
TWI77G0486 Tripterygium wilfordii HOM05D006503 ORTHO05D008116 4.3e-41 174.1 316 52.5
Zm00001eb221750 Zea mays HOM05D006503 ORTHO05D008116 2.8e-40 171.4 314 52.9
RcHm_v2.0_Chr5g0022901 Rosa chinensis HOM05D006503 ORTHO05D008116 1.4e-39 169.1 317 53.3
MD05G1241300 Malus domestica HOM05D006503 ORTHO05D008116 3.1e-39 167.9 317 53.0
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 1.5e-38 165.6 321 51.7
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 4.5e-38 164.1 320 50.6
Oeu016352.1 Olea europaea HOM05D006503 ORTHO05D008116 1.0e-37 162.9 317 53.0
Peaxi162Scf00020g00194 Petunia axillaris HOM05D006503 ORTHO05D008116 1.3e-37 162.5 313 53.0
Prupe.4G124200 Prunus persica HOM05D006503 ORTHO05D008116 1.7e-37 162.2 317 53.6
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 3.8e-37 161.0 314 53.8
MSTRG.6424 Avicennia marina HOM05D006503 ORTHO05D008116 6.5e-37 160.2 317 52.4
Cc06_g17640 Coffea canephora HOM05D006503 ORTHO05D008116 3.2e-36 157.9 318 50.9
COL.COLO4_08106 Corchorus olitorius HOM05D006503 ORTHO05D008116 4.2e-36 157.5 318 49.1
CAN.G1274.14 Capsicum annuum HOM05D006503 ORTHO05D008116 5.5e-36 157.1 313 52.4
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 5.5e-36 157.1 325 50.8
Lju124C42T22 Lonicera japonica HOM05D006503 ORTHO05D008116 1.6e-35 155.6 773 63.3
Lalb_Chr13g0292411 Lupinus albus HOM05D006503 ORTHO05D008116 1.6e-35 155.6 316 47.5
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 4.6e-35 154.1 316 51.9
Hma1.2p1_1041F.1_g251090 Hydrangea macrophylla HOM05D006503 ORTHO05D008116 1.8e-34 152.1 308 46.1
Migut.J01751 Erythranthe guttata HOM05D006503 ORTHO05D008116 2.5e-33 148.3 322 50.0
Ciclev10004347m.g Citrus clementina HOM05D006503 ORTHO05D008116 4.3e-33 147.5 315 51.4
QL04p096113 Quercus lobata HOM05D006503 ORTHO05D008116 4.3e-33 147.5 316 49.7
HanXRQChr13g0395951 Helianthus annuus HOM05D006503 ORTHO05D008116 7.4e-33 146.7 318 50.0
SalBow6G5105 Salvia bowleyana HOM05D006503 ORTHO05D008116 2.2e-32 145.2 314 49.4
Aqoxy2G03029 Aquilegia oxysepala HOM05D006503 ORTHO05D008116 2.8e-32 144.8 313 49.8
Sed0013522 Sechium edule HOM05D006503 ORTHO05D008116 2.8e-32 144.8 317 44.2
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 2.8e-32 144.8 317 50.2
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 8.2e-32 143.3 197 41.1
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.8e-31 142.1 303 46.2
arahy.Tifrunner.gnm1.ann1.ER6M1I Arachis hypogaea HOM05D006503 ORTHO05D008116 2.4e-31 141.7 303 46.9
arahy.Tifrunner.gnm1.ann1.YC2S1L Arachis hypogaea HOM05D006503 ORTHO05D008116 2.4e-31 141.7 303 46.9
ATR0561G112 Amborella trichopoda HOM05D006503 ORTHO05D008116 4.1e-31 141.0 780 58.5
QL04p096294 Quercus lobata HOM05D006503 ORTHO05D008116 4.1e-31 141.0 762 65.6
arahy.Tifrunner.gnm1.ann1.97ANKK Arachis hypogaea HOM05D006503 ORTHO05D008116 5.3e-31 140.6 303 47.9
arahy.Tifrunner.gnm1.ann1.RL700P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.5e-30 139.0 303 48.2
Dinv36159 Davidia involucrata HOM05D006503 ORTHO05D008116 2.0e-30 138.7 316 50.6
Nitab4.5_0002332g0010 Nicotiana tabacum HOM05D006503 ORTHO05D008116 5.9e-30 137.1 262 56.5
CSS0000010 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 1.0e-29 136.3 316 46.2
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 1.0e-29 136.3 306 43.8
ClCG02G018860 Citrullus lanatus HOM05D006503 ORTHO05D008116 2.2e-29 135.2 311 48.6
CiPaw.15G110400 Carya illinoinensis HOM05D006503 ORTHO05D008116 2.9e-29 134.8 314 41.7
arahy.Tifrunner.gnm1.ann1.KC4DMY Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-28 132.5 303 46.9
BcaC03g15903 Brassica carinata HOM05D006503 ORTHO05D008116 2.5e-28 131.7 306 42.8
BolC2t09665H Brassica oleracea HOM05D006503 ORTHO05D008116 2.5e-28 131.7 306 42.8
BraA02t07289Z Brassica rapa HOM05D006503 ORTHO05D008116 5.5e-28 130.6 306 43.1
C02p36700 Brassica napus HOM05D006503 ORTHO05D008116 7.2e-28 130.2 306 42.5
Sopen02g028560 Solanum pennellii HOM05D006503 ORTHO05D008116 9.4e-28 129.8 313 48.9
Actinidia38544 Actinidia chinensis HOM05D006503 ORTHO05D008116 1.6e-27 129.0 316 46.5
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 1.6e-27 129.0 306 38.9
A02p22890 Brassica napus HOM05D006503 ORTHO05D008116 2.1e-27 128.6 306 42.8
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 3.6e-27 127.9 317 40.4
BcaB05g25205 Brassica carinata HOM05D006503 ORTHO05D008116 3.6e-27 127.9 306 42.2
CANSAT21G0513 Cannabis sativa HOM05D006503 ORTHO05D008116 6.1e-27 127.1 316 48.1
CARHR036700 Cardamine hirsuta HOM05D006503 ORTHO05D008116 6.1e-27 127.1 306 42.8
VMungo1309G1456 Vigna mungo HOM05D006503 ORTHO05D008116 7.9e-27 126.7 303 41.9
Rhsim04G0102600 Rhododendron simsii HOM05D006503 ORTHO05D008116 1.4e-26 125.9 315 45.7
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 3.9e-26 124.4 306 37.9
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 3.9e-26 124.4 316 48.4
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 3.9e-26 124.4 763 63.7
PGSC0003DMG401003570 Solanum tuberosum HOM05D006503 ORTHO05D008116 3.9e-26 124.4 313 48.6
SHI16040 Sapria himalayana HOM05D006503 ORTHO05D008116 5.1e-26 124.0 318 45.3
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 8.8e-26 123.2 308 41.9
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 8.8e-26 123.2 267 52.1
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 5.7e-25 120.6 319 38.2
CsaV3_6G013320 Cucumis sativus L. HOM05D006503 ORTHO05D008116 1.7e-24 119.0 316 47.5
MELO3C019605.2 Cucumis melo HOM05D006503 ORTHO05D008116 3.7e-24 117.9 316 47.2
Sc13g0001660 Simmondsia chinensis HOM05D006503 ORTHO05D008116 3.7e-24 117.9 317 47.0
Medtr5g039700 Medicago truncatula HOM05D006503 ORTHO05D008116 3.1e-23 114.8 319 37.3
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 3.1e-23 114.8 162 38.3
Lsat_1_v5_gn_5_161280 Lactuca sativa HOM05D006503 ORTHO05D008116 5.3e-23 114.0 743 56.1
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 2.6e-22 111.7 303 47.5
Nn5g26957 Nelumbo nucifera HOM05D006503 ORTHO05D008116 3.4e-22 111.3 173 39.3
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 4.5e-22 110.9 179 36.3
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 4.5e-22 110.9 179 36.3
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 1.0e-21 109.8 179 36.9
Psat5g067680 Pisum sativum HOM05D006503 ORTHO05D008116 1.0e-21 109.8 318 45.9
Cpa.g.sc32.63 Carica papaya HOM05D006503 ORTHO05D008116 1.3e-21 109.4 178 34.8
Glyma.06G144800 Glycine max HOM05D006503 ORTHO05D008116 2.2e-21 108.6 310 47.1
Solyc02g083780.3 Solanum lycopersicum HOM05D002880 ORTHO05D008116 2.2e-21 108.6 291 48.5
AUR62038078 Chenopodium quinoa HOM05D006503 ORTHO05D008116 5.0e-21 107.5 320 43.4
Ca_06133_v3 Cicer arietinum L. HOM05D006503 ORTHO05D008116 5.0e-21 107.5 253 53.4
TAR633G2684 Trochodendron aralioides HOM05D000623 ORTHO05D008116 5.0e-21 107.5 180 36.7
TAR633G2474 Trochodendron aralioides HOM05D006503 ORTHO05D008116 6.5e-21 107.1 180 37.8
SalBow6G4098 Salvia bowleyana HOM05D006503 ORTHO05D008116 2.5e-20 105.1 314 44.9
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 7.2e-20 103.6 315 43.5
vmacro09073 Vaccinium macrocarpon HOM05D006503 ORTHO05D008116 9.4e-20 103.2 244 54.9
arahy.Tifrunner.gnm1.ann1.1KXV0X Arachis hypogaea HOM05D006503 ORTHO05D008116 2.7e-19 101.7 279 36.6
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 4.7e-19 100.9 292 30.8
arahy.Tifrunner.gnm1.ann1.J10LLE Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-18 99.4 173 32.9
CDE05G1884 Ceratophyllum demersum HOM05D006503 ORTHO05D008116 1.4e-18 99.4 316 24.1
THA.LOC104808133 Tarenaya hassleriana HOM05D006503 ORTHO05D008116 2.3e-18 98.6 164 38.4
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 3.0e-18 98.2 170 31.2
Actinidia17234 Actinidia chinensis HOM05D006503 ORTHO05D008116 3.9e-18 97.8 180 30.0
PGR004G2741 Punica granatum HOM05D006503 ORTHO05D008116 5.2e-18 97.4 176 34.1
TAR629G2271 Trochodendron aralioides HOM05D006503 ORTHO05D008116 1.7e-16 92.4 230 47.4
DCAR_022897 Daucus carota HOM05D006503 ORTHO05D008116 4.8e-16 90.9 140 32.9
Nitab4.5_0000051g0090 Nicotiana tabacum HOM05D006503 ORTHO05D008116 4.8e-16 90.9 165 33.9
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 6.3e-16 90.5 162 35.8
Lj6g0025212 Lotus japonicus HOM05D006503 ORTHO05D008116 6.3e-16 90.5 241 52.3
Ah.13g074010 Amaranthus hybridus HOM05D006503 ORTHO05D008116 8.2e-16 90.1 159 33.3
TPR.G29649 Trifolium pratense HOM05D006503 ORTHO05D008116 3.1e-15 88.2 288 40.3
Eucgr.A02340 Eucalyptus grandis HOM05D006503 ORTHO05D008116 7.7e-14 83.6 156 30.8
Hund03989 Selenicereus undatus HOM05D006503 ORTHO05D008116 9.7e-09 66.6 184 53.8
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 3.1e-07 61.6 211 37.0
ATR0177G045 Amborella trichopoda HOM05D006503 ORTHO05D008116 4.1e-07 61.2 52 51.9
Phvul.009G141200 Phaseolus vulgaris HOM05D006503 ORTHO05D008116 2.0e-06 58.9 81 35.8
SEGI_01901 Sequoiadendron giganteum HOM05D006503 ORTHO05D008116 2.7e-06 58.5 163 27.6
Glyma.04G221000 Glycine max HOM05D006503 ORTHO05D008116 7.7e-06 57.0 66 40.9


User provided reference genes

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