Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 2.4e-133 478.8 231 100.0
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 5.4e-69 265.0 215 61.4
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 3.9e-67 258.8 220 57.3
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 4.3e-66 255.4 204 63.2
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 1.2e-65 253.8 205 61.5
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 1.6e-65 253.4 212 60.4
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 3.6e-65 252.3 216 59.3
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 1.4e-64 250.4 204 61.3
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 3.1e-64 249.2 202 58.9
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 3.1e-64 249.2 214 58.9
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 3.1e-64 249.2 219 58.4
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 4.0e-64 248.8 205 61.0
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 8.9e-64 247.7 206 62.6
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 1.2e-63 247.3 208 59.6
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 1.5e-63 246.9 217 57.6
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 1.5e-63 246.9 202 59.4
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 1.5e-63 246.9 213 57.7
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 2.0e-63 246.5 215 58.1
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 1.7e-62 243.4 204 60.8
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 3.7e-62 242.3 216 58.3
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 3.7e-62 242.3 204 59.3
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 4.9e-62 241.9 205 60.0
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 4.9e-62 241.9 201 59.7
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 6.4e-62 241.5 202 57.9
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 6.4e-62 241.5 220 57.7
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 1.1e-61 240.7 225 54.2
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 3.2e-61 239.2 218 54.6
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 3.2e-61 239.2 216 56.5
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 4.1e-61 238.8 203 59.1
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 4.1e-61 238.8 204 58.8
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.2e-60 237.3 217 56.2
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 1.2e-60 237.3 218 54.1
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 1.2e-60 237.3 205 59.0
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 1.2e-60 237.3 215 55.3
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 1.6e-60 236.9 202 57.4
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 1.6e-60 236.9 191 62.3
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 2.1e-60 236.5 178 63.5
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 2.7e-60 236.1 189 62.4
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 3.5e-60 235.7 213 56.3
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 6.0e-60 235.0 192 60.4
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 6.0e-60 235.0 192 60.9
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 6.0e-60 235.0 192 60.4
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 1.0e-59 234.2 207 53.1
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 1.0e-59 234.2 205 56.6
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 1.0e-59 234.2 213 55.9
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 1.0e-59 234.2 213 55.9
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 1.3e-59 233.8 204 57.4
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 1.7e-59 233.4 213 55.9
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 2.3e-59 233.0 225 53.3
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 2.3e-59 233.0 189 60.3
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 3.0e-59 232.6 189 62.4
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 3.0e-59 232.6 189 61.4
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 3.0e-59 232.6 202 58.4
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 3.0e-59 232.6 215 55.8
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 3.9e-59 232.3 180 61.1
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 3.9e-59 232.3 180 61.7
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 5.1e-59 231.9 213 55.4
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 5.1e-59 231.9 205 56.1
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 6.6e-59 231.5 210 56.7
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 8.6e-59 231.1 204 57.4
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 4.3e-58 228.8 189 58.2
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.6e-58 228.4 216 55.1
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 5.6e-58 228.4 208 58.7
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 5.6e-58 228.4 181 60.8
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 7.3e-58 228.0 183 62.8
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 9.5e-58 227.6 183 61.2
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 1.2e-57 227.3 216 55.1
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 1.2e-57 227.3 215 54.9
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 2.1e-57 226.5 207 57.0
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 2.1e-57 226.5 216 51.4
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 2.1e-57 226.5 207 56.0
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 2.8e-57 226.1 181 58.6
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 6.2e-57 224.9 221 52.9
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 6.2e-57 224.9 165 61.8
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 8.1e-57 224.6 187 60.4
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 8.1e-57 224.6 187 60.4
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 1.1e-56 224.2 205 57.1
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 1.1e-56 224.2 212 53.3
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 3.1e-56 222.6 187 59.9
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 3.1e-56 222.6 207 55.1
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 4.0e-56 222.2 193 59.6
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 6.8e-56 221.5 207 56.5
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 6.8e-56 221.5 189 56.6
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 1.2e-55 220.7 207 55.6
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 1.5e-55 220.3 207 55.6
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 1.5e-55 220.3 190 59.5
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 2.0e-55 219.9 193 59.1
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 2.6e-55 219.5 207 56.0
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 5.8e-55 218.4 199 56.3
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 9.9e-55 217.6 182 61.0
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 1.7e-54 216.9 198 56.1
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 6.4e-54 214.9 211 52.6
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 8.3e-54 214.5 207 54.6
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.1e-53 214.2 207 53.1
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 1.1e-53 214.2 216 51.9
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.4e-53 213.0 216 52.8
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 3.2e-53 212.6 207 53.1
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 5.4e-53 211.8 211 55.0
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 9.2e-53 211.1 206 54.9
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 9.2e-53 211.1 204 53.9
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 3.5e-52 209.1 213 52.6
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 4.6e-52 208.8 205 54.6
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 2.1e-49 199.9 204 51.5
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 4.7e-49 198.7 214 50.9
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 6.8e-48 194.9 219 50.7
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 4.9e-46 188.7 210 51.0
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 8.4e-46 188.0 176 52.8
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 5.4e-45 185.3 203 50.2
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 3.5e-44 182.6 219 48.9
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 1.5e-42 177.2 215 45.1
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 2.5e-42 176.4 202 49.0
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 4.7e-41 172.2 112 70.5
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 2.4e-40 169.9 181 50.3
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 1.5e-39 167.2 217 42.4
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 2.0e-39 166.8 150 54.0
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 4.4e-39 165.6 171 48.0
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 4.9e-38 162.2 182 44.5
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 6.4e-38 161.8 149 55.7
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.4e-37 160.6 106 70.8
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 9.3e-37 157.9 149 55.0
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 6.0e-36 155.2 210 42.9
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 2.1e-33 146.7 146 49.3
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 1.8e-27 127.1 154 42.9
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 9.0e-24 114.8 171 42.7
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 3.3e-18 96.3 119 42.9
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 2.8e-09 66.6 98 40.8


User provided reference genes

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