Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 7.0e-63 243.8 126 100.0
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.6e-46 189.5 106 93.4
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 2.5e-36 155.6 105 75.2
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.6e-35 152.9 105 73.3
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 8.1e-35 150.6 105 74.3
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 8.1e-35 150.6 105 72.4
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 1.1e-34 150.2 105 71.4
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 1.4e-34 149.8 106 69.8
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 1.4e-34 149.8 105 72.4
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 2.3e-34 149.1 105 70.5
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 6.8e-34 147.5 105 74.3
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 6.8e-34 147.5 105 72.4
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 2.0e-33 146.0 105 72.4
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 2.6e-33 145.6 99 71.7
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 2.6e-33 145.6 105 69.5
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 3.4e-33 145.2 105 70.5
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 5.8e-33 144.4 107 68.2
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 5.8e-33 144.4 105 72.4
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 7.6e-33 144.1 105 70.5
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 9.9e-33 143.7 105 72.4
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 2.2e-32 142.5 107 67.3
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 2.2e-32 142.5 105 68.6
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 2.2e-32 142.5 105 71.4
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.9e-32 142.1 105 68.6
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 2.9e-32 142.1 105 65.7
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 3.7e-32 141.7 106 68.9
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 4.9e-32 141.4 105 65.7
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 4.9e-32 141.4 105 64.8
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 6.4e-32 141.0 105 68.6
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 1.4e-31 139.8 105 65.7
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 1.9e-31 139.4 105 68.6
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 1.9e-31 139.4 105 66.7
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 2.4e-31 139.0 105 66.7
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 2.4e-31 139.0 105 67.6
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 4.1e-31 138.3 105 66.7
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 7.1e-31 137.5 105 65.7
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 9.2e-31 137.1 105 64.8
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 2.1e-30 136.0 99 71.7
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 2.1e-30 136.0 122 58.2
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 2.7e-30 135.6 105 65.7
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 2.7e-30 135.6 105 64.8
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.7e-30 135.6 99 65.7
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 3.5e-30 135.2 122 59.0
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 3.5e-30 135.2 122 59.0
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 3.5e-30 135.2 105 63.8
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 3.5e-30 135.2 105 63.8
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 3.5e-30 135.2 105 65.7
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 3.5e-30 135.2 105 66.7
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 4.6e-30 134.8 118 59.3
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 6.0e-30 134.4 105 66.7
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 7.8e-30 134.0 105 65.7
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 7.8e-30 134.0 105 65.7
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 7.8e-30 134.0 105 65.7
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 7.8e-30 134.0 105 65.7
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 7.8e-30 134.0 105 65.7
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 7.8e-30 134.0 105 65.7
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 7.8e-30 134.0 122 57.4
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 7.8e-30 134.0 118 58.5
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 7.8e-30 134.0 105 65.7
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 1.0e-29 133.7 105 65.7
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 1.0e-29 133.7 98 66.3
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 1.3e-29 133.3 105 65.7
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.3e-29 133.3 105 65.7
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.7e-29 132.9 105 63.8
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 1.7e-29 132.9 105 64.8
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 2.3e-29 132.5 105 64.8
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 2.3e-29 132.5 105 63.8
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 2.3e-29 132.5 105 62.9
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 3.0e-29 132.1 105 63.8
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 3.9e-29 131.7 105 62.9
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 3.9e-29 131.7 105 63.8
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 5.1e-29 131.3 105 62.9
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 2.5e-28 129.0 105 61.9
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 2.5e-28 129.0 105 63.8
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 3.3e-28 128.6 105 64.8
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 5.6e-28 127.9 105 61.9
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 1.2e-27 126.7 105 61.9
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 8.1e-27 124.0 105 58.1
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 1.1e-26 123.6 105 57.1
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 2.4e-26 122.5 105 58.1
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 2.4e-26 122.5 105 56.2
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 2.0e-25 119.4 105 53.3
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 2.0e-25 119.4 97 60.8
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 7.6e-25 117.5 105 61.9
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 7.6e-25 117.5 105 54.3
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 1.3e-24 116.7 122 50.0
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 1.3e-24 116.7 97 60.8
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 2.2e-24 115.9 105 52.4
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 2.9e-24 115.5 122 50.0
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 8.4e-24 114.0 105 61.0
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.2e-22 110.2 82 63.4
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 1.2e-22 110.2 82 62.2
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.1e-22 109.4 82 62.2
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 2.1e-22 109.4 106 50.9
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 4.6e-22 108.2 139 43.9
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 6.0e-22 107.8 82 62.2
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.7e-21 106.3 98 53.1
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 1.6e-19 99.8 82 59.8
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 8.1e-19 97.4 129 42.6
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 1.8e-18 96.3 105 52.4
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 4.0e-18 95.1 64 67.2
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 6.9e-18 94.4 63 66.7
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 6.9e-18 94.4 63 66.7
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 9.0e-18 94.0 59 74.6
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 3.4e-17 92.0 64 65.6
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 4.4e-17 91.7 97 42.3
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.3e-16 90.1 82 61.0
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 4.6e-14 81.6 89 49.4
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 6.0e-14 81.3 105 49.5
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 7.9e-14 80.9 99 46.5
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 2.1e-11 72.8 59 57.6
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 3.1e-10 68.9 64 53.1
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 2.7e-06 55.8 44 54.5


User provided reference genes

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