Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 5.6e-181 637.5 326 100.0
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 3.5e-66 256.1 343 42.6
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 3.3e-64 249.6 343 43.7
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 4.3e-64 249.2 283 47.3
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.3e-64 249.2 345 43.8
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 3.7e-63 246.1 281 47.7
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 6.9e-62 241.9 291 46.4
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 2.0e-61 240.4 344 41.6
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 2.9e-60 236.5 324 41.4
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 4.9e-60 235.7 341 41.1
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.4e-59 234.2 343 40.8
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.4e-59 234.2 343 40.8
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 3.2e-59 233.0 284 45.4
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.6e-58 230.7 344 40.1
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 3.5e-58 229.6 283 44.2
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 4.6e-58 229.2 288 44.8
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 4.6e-58 229.2 275 42.2
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 7.9e-58 228.4 284 44.4
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 7.9e-58 228.4 283 43.5
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 2.3e-57 226.9 337 40.9
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 3.0e-57 226.5 283 45.2
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 3.0e-57 226.5 348 40.8
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 5.1e-57 225.7 285 44.6
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 5.1e-57 225.7 345 38.3
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 6.7e-57 225.3 344 40.4
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 8.7e-57 224.9 283 45.9
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 8.7e-57 224.9 284 44.7
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.1e-56 224.6 289 44.6
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.1e-56 224.6 281 43.1
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 1.5e-56 224.2 284 45.1
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 1.5e-56 224.2 284 45.1
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.9e-56 223.8 283 45.2
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 2.5e-56 223.4 285 44.2
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 2.5e-56 223.4 284 44.4
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 9.6e-56 221.5 341 41.6
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.3e-55 221.1 275 41.1
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.6e-55 220.7 348 39.7
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.1e-55 220.3 275 41.1
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 6.2e-55 218.8 343 38.5
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 6.2e-55 218.8 345 40.0
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 6.2e-55 218.8 345 37.7
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 8.2e-55 218.4 275 41.8
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.1e-54 218.0 275 41.8
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.4e-54 217.6 282 42.6
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.4e-54 217.6 345 39.7
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 1.8e-54 217.2 283 42.0
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.8e-54 217.2 278 41.7
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 3.1e-54 216.5 347 39.8
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 4.0e-54 216.1 314 41.1
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 4.0e-54 216.1 282 43.3
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 4.0e-54 216.1 346 39.6
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 4.0e-54 216.1 343 40.8
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 4.0e-54 216.1 314 39.8
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 5.3e-54 215.7 331 41.4
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 6.9e-54 215.3 345 39.7
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 6.9e-54 215.3 344 37.8
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 6.9e-54 215.3 342 38.0
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 9.0e-54 214.9 279 41.6
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.2e-53 214.5 280 43.9
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.2e-53 214.5 275 40.0
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.2e-53 214.5 341 37.8
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.5e-53 214.2 328 40.9
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 2.0e-53 213.8 344 37.8
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.0e-53 213.8 340 38.2
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 2.6e-53 213.4 346 40.2
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 4.5e-53 212.6 341 38.4
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 5.8e-53 212.2 322 38.8
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 7.6e-53 211.8 329 40.7
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 7.6e-53 211.8 342 38.3
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.9e-52 209.9 281 40.9
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 8.4e-52 208.4 285 42.8
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 8.4e-52 208.4 323 39.0
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.9e-51 207.2 343 38.5
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 2.5e-51 206.8 333 39.6
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 2.5e-51 206.8 328 39.3
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 2.5e-51 206.8 346 37.9
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 4.2e-51 206.1 278 41.4
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 5.5e-51 205.7 346 36.7
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 1.6e-50 204.1 331 39.3
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 2.1e-50 203.8 346 37.6
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 2.1e-50 203.8 282 39.7
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.1e-50 203.8 346 37.6
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 3.5e-50 203.0 343 37.6
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 4.6e-50 202.6 346 37.9
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 6.0e-50 202.2 276 42.0
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 7.9e-50 201.8 282 39.0
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.0e-49 201.4 283 41.7
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 1.3e-49 201.1 346 36.7
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.8e-49 200.7 344 39.0
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 3.0e-49 199.9 344 37.2
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.9e-49 199.5 344 36.0
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 5.1e-49 199.1 276 41.7
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 5.1e-49 199.1 279 40.5
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 6.7e-49 198.7 345 36.5
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 1.5e-48 197.6 333 39.6
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.5e-48 197.6 344 35.5
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 1.9e-48 197.2 333 39.6
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.9e-48 197.2 338 39.1
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 2.5e-48 196.8 286 40.9
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 2.5e-48 196.8 286 39.9
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.7e-48 195.7 330 37.3
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 9.7e-48 194.9 344 37.2
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.3e-47 194.5 281 37.4
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 2.2e-47 193.7 285 42.1
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 6.3e-47 192.2 341 37.5
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.4e-46 191.0 340 35.6
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 2.4e-46 190.3 290 39.0
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 3.1e-46 189.9 344 36.9
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 4.1e-46 189.5 309 38.8
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 4.1e-46 189.5 282 39.0
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.3e-44 184.5 344 34.3
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 2.2e-44 183.7 212 44.3
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 5.0e-44 182.6 212 42.0
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 6.5e-44 182.2 309 38.2
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 2.5e-43 180.3 281 38.1
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 5.5e-43 179.1 306 39.2
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.2e-42 177.9 258 42.2
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 2.7e-42 176.8 332 37.7
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 2.5e-40 170.2 212 42.5
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 3.3e-40 169.9 321 34.3
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.7e-40 169.1 354 34.2
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 7.4e-40 168.7 284 34.9
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 7.4e-40 168.7 327 33.9
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.8e-38 164.1 341 32.6
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 3.1e-38 163.3 212 39.6
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.2e-37 161.4 287 33.8
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 8.5e-36 155.2 137 54.0
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 8.5e-36 155.2 200 41.5
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.5e-35 153.7 323 33.7
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 7.2e-35 152.1 279 34.4
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 9.4e-35 151.8 177 44.1
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 9.4e-35 151.8 315 33.3
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.6e-34 151.0 212 38.2
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 2.1e-34 150.6 253 39.1
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 2.7e-34 150.2 230 40.9
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 4.7e-34 149.4 275 34.9
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.3e-31 141.4 137 51.1
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.7e-31 139.8 129 51.9
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 2.0e-29 134.0 213 33.8
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.7e-26 123.6 242 33.9
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.4e-25 121.3 242 33.1
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.8e-25 120.9 342 30.4
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 2.8e-23 113.6 264 33.0
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 5.9e-21 105.9 153 41.8
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 1.2e-18 98.2 101 45.5
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 2.3e-09 67.4 218 27.5
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.7e-07 61.2 101 33.7
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.8e-07 60.5 47 61.7


User provided reference genes

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