Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 4.1e-173 611.3 312 100.0
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 9.2e-173 610.1 312 99.7
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 3.7e-81 305.8 317 49.8
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 8.3e-81 304.7 314 50.3
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 1.4e-80 303.9 317 51.4
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 1.8e-80 303.5 315 50.8
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 2.4e-80 303.1 315 50.2
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 3.1e-80 302.8 311 52.4
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 9.2e-80 301.2 305 51.5
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 4.5e-79 298.9 315 49.2
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 7.8e-79 298.1 314 50.6
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 1.0e-78 297.7 316 51.3
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.0e-78 297.7 316 51.3
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 5.0e-78 295.4 314 49.4
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 8.6e-78 294.7 320 50.0
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 2.5e-77 293.1 318 50.3
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 2.1e-76 290.0 313 48.9
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 2.1e-76 290.0 323 48.9
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 6.1e-76 288.5 315 48.9
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 6.1e-76 288.5 310 49.4
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 8.0e-76 288.1 316 48.7
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 1.4e-75 287.3 315 49.2
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 1.4e-75 287.3 320 47.8
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 1.4e-75 287.3 315 49.5
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 1.8e-75 287.0 312 49.7
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 3.0e-75 286.2 317 47.9
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 5.2e-75 285.4 313 48.9
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 5.2e-75 285.4 281 52.3
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 6.8e-75 285.0 314 48.4
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 8.9e-75 284.6 320 47.5
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 1.2e-74 284.3 316 47.2
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 1.2e-74 284.3 314 49.4
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 1.5e-74 283.9 315 46.7
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 1.5e-74 283.9 316 47.2
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.5e-74 283.9 317 47.6
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 3.4e-74 282.7 309 47.2
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 5.7e-74 282.0 319 46.7
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 1.3e-73 280.8 317 47.0
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 2.9e-73 279.6 309 49.2
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 3.7e-73 279.3 317 46.1
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 3.7e-73 279.3 318 48.4
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 8.3e-73 278.1 315 48.3
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 8.3e-73 278.1 315 46.0
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 8.3e-73 278.1 323 46.7
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 1.1e-72 277.7 315 46.7
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 3.2e-72 276.2 317 46.1
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 3.2e-72 276.2 314 47.1
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 4.1e-72 275.8 313 47.0
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 5.4e-72 275.4 310 46.5
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 5.4e-72 275.4 317 46.4
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 7.0e-72 275.0 317 46.7
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 7.0e-72 275.0 317 47.0
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 9.2e-72 274.6 317 47.9
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 1.2e-71 274.2 314 47.5
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 2.0e-71 273.5 313 48.6
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 2.7e-71 273.1 315 45.7
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 2.7e-71 273.1 317 46.1
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 1.0e-70 271.2 307 47.6
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 1.7e-70 270.4 316 44.6
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 2.3e-70 270.0 306 48.4
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 3.9e-70 269.2 301 48.2
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 3.9e-70 269.2 315 45.4
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 6.6e-70 268.5 316 45.9
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 6.6e-70 268.5 314 43.9
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 6.6e-70 268.5 317 44.2
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 1.1e-69 267.7 313 45.7
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 1.1e-69 267.7 313 45.7
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 1.1e-69 267.7 317 44.5
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 1.1e-69 267.7 280 50.0
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 2.5e-69 266.5 315 44.4
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 2.5e-69 266.5 315 45.4
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 2.5e-69 266.5 315 45.7
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 3.3e-69 266.2 313 45.0
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 3.3e-69 266.2 315 44.4
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 3.3e-69 266.2 340 43.5
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 7.3e-69 265.0 315 44.4
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 1.6e-68 263.8 315 45.7
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 1.6e-68 263.8 317 44.2
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 3.6e-68 262.7 315 45.7
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 4.7e-68 262.3 313 45.0
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 6.2e-68 261.9 314 47.1
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 1.0e-67 261.2 315 46.3
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 1.4e-67 260.8 316 45.6
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 1.8e-67 260.4 307 46.3
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 2.3e-67 260.0 313 45.0
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 1.2e-66 257.7 316 45.3
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 6.4e-65 251.9 314 41.4
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 8.3e-65 251.5 309 46.0
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 5.4e-64 248.8 315 42.5
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 2.7e-63 246.5 310 42.9
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 2.3e-62 243.4 316 43.4
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 1.1e-61 241.1 304 44.1
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 1.5e-58 230.7 313 41.9
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 9.2e-56 221.5 271 45.0
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 2.1e-55 220.3 256 46.5
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 1.9e-53 213.8 317 41.0
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 7.1e-48 195.3 219 48.9
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 2.1e-47 193.7 248 43.5
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 1.1e-45 188.0 313 38.7
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 2.1e-44 183.7 254 42.5
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 6.2e-44 182.2 281 38.8
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 3.2e-40 169.9 210 44.8
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.4e-35 154.5 209 42.1
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 1.3e-33 147.9 196 41.3
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 3.5e-31 139.8 105 60.0
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 6.7e-30 135.6 184 42.9
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 6.7e-30 135.6 318 30.5
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 1.9e-24 117.5 112 53.6
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 6.0e-23 112.5 124 46.0
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 1.1e-19 101.7 213 33.3
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 1.3e-17 94.7 110 44.5
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 8.4e-17 92.0 70 55.7
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 1.4e-16 91.3 69 56.5
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 7.9e-15 85.5 64 57.8
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 1.0e-14 85.1 140 35.7
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 1.5e-13 81.3 140 34.3
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 1.5e-13 81.3 140 35.0
SMO364G0376 Selaginella moellendorffii HOM05D006244 ORTHO05D007401 2.5e-13 80.5 310 23.9
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 1.3e-12 78.2 265 28.7
Glyma.13G344600 Glycine max HOM05D006244 ORTHO05D007401 1.3e-12 78.2 58 62.1
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 4.8e-12 76.3 129 34.9
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 6.3e-12 75.9 129 36.4
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 1.4e-11 74.7 142 33.1
AagrBONN_evm.TU.Sc2ySwM_228.3866 Anthoceros agrestis HOM05D006244 ORTHO05D007401 4.5e-10 69.7 117 32.5
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 5.9e-10 69.3 129 36.4


User provided reference genes

Program Settings