Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001247 Vanilla planifolia HOM05D005970 ORTHO05D007146 0.0e+00 1549.3 760 100.0
HPP92_001263 Vanilla planifolia HOM05D005970 ORTHO05D007146 0.0e+00 1458.4 761 94.7
HPP92_002722 Vanilla planifolia HOM05D005970 ORTHO05D007146 3.4e-213 745.7 734 55.2
MBI08_g17320_MAGBIO Magnolia biondii HOM05D005970 ORTHO05D007146 1.6e-210 736.9 628 58.3
Aqoxy2G04048 Aquilegia oxysepala HOM05D005970 ORTHO05D007146 1.8e-198 696.8 635 56.2
TAR362G0058 Trochodendron aralioides HOM05D005970 ORTHO05D007146 2.6e-197 693.0 639 56.3
Dinv22666 Davidia involucrata HOM05D005970 ORTHO05D007146 6.9e-190 668.3 617 55.1
Os04g0489100 Oryza sativa ssp. japonica HOM05D005970 ORTHO05D007146 1.5e-184 650.6 616 54.4
Actinidia32934 Actinidia chinensis HOM05D005970 ORTHO05D007146 6.3e-183 645.2 597 54.4
COL.COLO4_24350 Corchorus olitorius HOM05D005970 ORTHO05D007146 2.4e-182 643.3 582 55.5
ATR0618G312 Amborella trichopoda HOM05D005970 ORTHO05D007146 3.1e-182 642.9 641 52.4
CsaV3_6G003170 Cucumis sativus L. HOM05D005970 ORTHO05D007146 5.0e-180 635.6 574 56.3
Eucgr.A00211 Eucalyptus grandis HOM05D005970 ORTHO05D007146 1.1e-179 634.4 570 56.3
Ah.12g062330 Amaranthus hybridus HOM05D005970 ORTHO05D007146 1.5e-179 634.0 609 53.5
Gorai.005G017800 Gossypium raimondii HOM05D005970 ORTHO05D007146 1.9e-179 633.6 574 54.2
CSS0014236 Camellia sinensis var. sinensis HOM05D005970 ORTHO05D007146 2.5e-179 633.3 573 55.3
Prupe.1G181900 Prunus persica HOM05D005970 ORTHO05D007146 3.2e-179 632.9 678 50.7
MELO3C011504.2 Cucumis melo HOM05D005970 ORTHO05D007146 2.1e-178 630.2 577 55.8
Potri.014G150800 Populus trichocarpa HOM05D005970 ORTHO05D007146 3.6e-178 629.4 600 54.0
FvH4_4g11690 Fragaria vesca HOM05D005970 ORTHO05D007146 6.1e-178 628.6 682 49.1
PGR083G2204 Punica granatum HOM05D005970 ORTHO05D007146 1.0e-177 627.9 586 52.9
Lj5g0014069 Lotus japonicus HOM05D005970 ORTHO05D007146 2.3e-177 626.7 582 54.3
CANSAT80G1971 Cannabis sativa HOM05D005970 ORTHO05D007146 3.0e-177 626.3 691 49.2
Atru.chr3.1658_Atru.chr3.1659 Acer truncatum HOM05D005970 ORTHO05D007146 1.3e-175 620.9 576 54.2
Gohir.A02G013401 Gossypium hirsutum HOM05D005970 ORTHO05D007146 4.8e-175 619.0 516 57.2
RcHm_v2.0_Chr4g0408981 Rosa chinensis HOM05D005970 ORTHO05D007146 2.4e-174 616.7 677 49.8
Duzib151G0884 Durio zibethinus HOM05D005970 ORTHO05D007146 4.1e-174 615.9 576 54.5
FAN12G0387 Fragaria x ananassa HOM05D005970 ORTHO05D007146 9.1e-174 614.8 697 48.2
Medtr1g116780 Medicago truncatula HOM05D005970 ORTHO05D007146 5.0e-172 609.0 600 52.3
Ca_11416_v3 Cicer arietinum L. HOM05D005970 ORTHO05D007146 2.5e-171 606.7 600 52.3
TPR.G8892 Trifolium pratense HOM05D005970 ORTHO05D007146 9.4e-171 604.7 601 51.2
Sc22g0002260 Simmondsia chinensis HOM05D005970 ORTHO05D007146 1.2e-170 604.4 604 52.6
Ciclev10023314m.g Citrus clementina HOM05D005970 ORTHO05D007146 2.1e-170 603.6 584 52.7
Sp1g04590 Schrenkiella parvula HOM05D005970 ORTHO05D007146 1.2e-168 597.8 606 51.2
VMungo0720G0532 Vigna mungo HOM05D005970 ORTHO05D007146 2.0e-168 597.0 668 47.9
GSVIVG01013548001 Vitis vinifera HOM05D005970 ORTHO05D007146 2.6e-168 596.7 495 59.4
arahy.Tifrunner.gnm1.ann1.ILR90A Arachis hypogaea HOM05D005970 ORTHO05D007146 7.5e-168 595.1 593 51.4
Carub.0001s0513 Capsella rubella HOM05D005970 ORTHO05D007146 7.5e-168 595.1 572 53.3
BolC8t47015H Brassica oleracea HOM05D005970 ORTHO05D007146 1.7e-167 594.0 596 51.7
AT1G05790 Arabidopsis thaliana HOM05D005970 ORTHO05D007146 2.2e-167 593.6 601 51.1
A08p36290 Brassica napus HOM05D005970 ORTHO05D007146 2.2e-167 593.6 586 52.0
BraA08t35533Z Brassica rapa HOM05D005970 ORTHO05D007146 2.2e-167 593.6 586 52.0
C08p02230 Brassica napus HOM05D005970 ORTHO05D007146 2.8e-167 593.2 586 52.2
Thhalv10006938m.g Eutrema salsugineum HOM05D005970 ORTHO05D007146 5.4e-166 589.0 577 53.0
THA.LOC104800916 Tarenaya hassleriana HOM05D005970 ORTHO05D007146 9.1e-166 588.2 671 48.3
Aa31LG1G8570 Aethionema arabicum HOM05D005970 ORTHO05D007146 1.6e-165 587.4 576 54.0
AL1G15700 Arabidopsis lyrata HOM05D005970 ORTHO05D007146 7.7e-165 585.1 572 52.8
Glyma.20G248000 Glycine max HOM05D005970 ORTHO05D007146 7.7e-165 585.1 659 47.5
Psat6g242520 Pisum sativum HOM05D005970 ORTHO05D007146 1.7e-164 583.9 607 51.2
A10p04500 Brassica napus HOM05D005970 ORTHO05D007146 3.8e-164 582.8 575 52.3
QL10p046561 Quercus lobata HOM05D005970 ORTHO05D007146 3.8e-164 582.8 694 45.5
arahy.Tifrunner.gnm1.ann1.R0ZLJW Arachis hypogaea HOM05D005970 ORTHO05D007146 6.5e-164 582.0 576 52.3
MD04G1032500 Malus domestica HOM05D005970 ORTHO05D007146 3.6e-162 576.2 499 57.5
Nitab4.5_0002313g0060 Nicotiana tabacum HOM05D005970 ORTHO05D007146 4.0e-161 572.8 607 48.8
Sopen09g036380 Solanum pennellii HOM05D005970 ORTHO05D007146 2.0e-160 570.5 654 47.4
Sabra14G0114200 Salix brachista HOM05D005970 ORTHO05D007146 5.7e-160 568.9 742 43.9
Nitab4.5_0001049g0010 Nicotiana tabacum HOM05D005970 ORTHO05D007146 9.8e-160 568.2 639 46.8
Peaxi162Scf00286g00235 Petunia axillaris HOM05D005970 ORTHO05D007146 2.2e-159 567.0 594 49.8
Solyc09g098450.4 Solanum lycopersicum HOM05D005970 ORTHO05D007146 2.2e-159 567.0 598 49.0
BraA10t42716Z Brassica rapa HOM05D005970 ORTHO05D007146 2.8e-159 566.6 582 50.9
Zm00001eb425400 Zea mays HOM05D005970 ORTHO05D007146 6.3e-159 565.5 493 58.0
AUR62042870 Chenopodium quinoa HOM05D005970 ORTHO05D007146 8.3e-159 565.1 642 49.4
Lj3A262T16 Lonicera japonica HOM05D005970 ORTHO05D007146 8.3e-159 565.1 474 58.4
Rhsim09G0037500 Rhododendron simsii HOM05D005970 ORTHO05D007146 1.1e-158 564.7 705 45.0
HanXRQChr17g0557031 Helianthus annuus HOM05D005970 ORTHO05D007146 2.7e-157 560.1 623 48.0
Sed0012260 Sechium edule HOM05D005970 ORTHO05D007146 7.7e-157 558.5 417 63.5
CAN.G710.55 Capsicum annuum HOM05D005970 ORTHO05D007146 1.3e-156 557.8 602 48.5
Gohir.D02G014300 Gossypium hirsutum HOM05D005970 ORTHO05D007146 1.0e-153 548.1 424 61.6
CiPaw.01G106400 Carya illinoinensis HOM05D005970 ORTHO05D007146 2.0e-152 543.9 364 69.5
FAN12G1273 Fragaria x ananassa HOM05D005970 ORTHO05D007146 2.6e-152 543.5 515 54.0
C05p04110 Brassica napus HOM05D005970 ORTHO05D007146 2.9e-151 540.0 581 48.7
Thecc.04G181600 Theobroma cacao HOM05D005970 ORTHO05D007146 8.3e-151 538.5 356 70.2
FAN07G1016 Fragaria x ananassa HOM05D005970 ORTHO05D007146 1.0e-148 531.6 515 53.0
BolC5t29189H Brassica oleracea HOM05D005970 ORTHO05D007146 5.0e-148 529.3 581 48.7
ECA234G4469 Erigeron canadensis HOM05D005970 ORTHO05D007146 1.9e-147 527.3 555 49.0
Hma1.2p1_1477F.1_g285890 Hydrangea macrophylla HOM05D005970 ORTHO05D007146 1.0e-145 521.5 440 58.0
Lalb_Chr06g0164591 Lupinus albus HOM05D005970 ORTHO05D007146 2.3e-145 520.4 500 53.2
Lsat_1_v5_gn_4_37800 Lactuca sativa HOM05D005970 ORTHO05D007146 3.5e-141 506.5 480 52.5
Mapoly0123s0015 Marchantia polymorpha HOM05D005970 ORTHO05D007146 3.6e-138 496.5 551 46.1
SMO336G0028 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 6.6e-132 475.7 563 43.9
SMO337G0034 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 2.5e-131 473.8 485 47.8
Sabra02G0176700 Salix brachista HOM05D005970 ORTHO05D007146 2.8e-130 470.3 583 45.8
AagrBONN_evm.TU.Sc2ySwM_368.857 Anthoceros agrestis HOM05D005970 ORTHO05D007146 1.4e-129 468.0 587 44.1
SMO337G0042 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 2.2e-127 460.7 671 39.5
AagrBONN_evm.TU.Sc2ySwM_368.849 Anthoceros agrestis HOM05D005970 ORTHO05D007146 9.9e-120 435.3 427 50.8
Cc00_g08710 Coffea canephora HOM05D005970 ORTHO05D007146 6.4e-119 432.6 459 51.2
CDE09G0649 Ceratophyllum demersum HOM05D005970 ORTHO05D007146 2.3e-116 424.1 599 41.6
ClCG08G003970 Citrullus lanatus HOM05D005970 ORTHO05D007146 1.1e-113 415.2 349 58.2
CBR_g2768 Chara braunii HOM05D005970 ORTHO05D007146 8.4e-111 405.6 623 40.1
vmacro00562 Vaccinium macrocarpon HOM05D005970 ORTHO05D007146 3.2e-110 403.7 538 43.1
Phvul.007G002300 Phaseolus vulgaris HOM05D005970 ORTHO05D007146 1.2e-109 401.7 324 59.6
Cpa.g.sc164.4 Carica papaya HOM05D005970 ORTHO05D007146 4.8e-106 389.8 310 60.6
Pp3c6_14360 Physcomitrium patens HOM05D005970 ORTHO05D007146 1.3e-103 381.7 660 38.3
Pp3c5_12210 Physcomitrium patens HOM05D005970 ORTHO05D007146 1.3e-98 365.2 535 40.6
Haze_11055 Corylus avellana HOM05D005970 ORTHO05D007146 1.8e-97 361.3 458 47.6
Nn1g09841 Nelumbo nucifera HOM05D005970 ORTHO05D007146 4.6e-93 346.7 310 58.4
Nn1g09815 Nelumbo nucifera HOM05D005970 ORTHO05D007146 2.2e-82 311.2 230 63.5
Manes.04G050700 Manihot esculenta HOM05D005970 ORTHO05D007146 2.6e-64 251.1 327 46.5
CARHR005310 Cardamine hirsuta HOM05D005970 ORTHO05D007146 3.6e-53 214.2 222 50.9
CAN.G959.7 Capsicum annuum HOM05D005970 ORTHO05D007146 1.7e-50 205.3 183 55.2
Potri.002G231534 Populus trichocarpa HOM05D005970 ORTHO05D007146 2.8e-45 188.0 124 70.2
DCAR_028456 Daucus carota HOM05D005970 ORTHO05D007146 3.0e-44 184.5 193 50.3
Potri.002G231501 Populus trichocarpa HOM05D005970 ORTHO05D007146 1.1e-41 176.0 154 54.5
Glyma.10G297100 Glycine max HOM05D005970 ORTHO05D007146 2.4e-41 174.9 175 51.4
DCAR_028457 Daucus carota HOM05D005970 ORTHO05D007146 7.5e-35 153.3 171 46.8
SMO001G0011 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 2.9e-34 151.4 174 43.7
Os01g0900200 Oryza sativa ssp. japonica HOM05D005970 ORTHO05D007146 1.4e-28 132.5 166 44.6
Potri.002G231567 Populus trichocarpa HOM05D005970 ORTHO05D007146 5.2e-28 130.6 148 50.0
Cpa.g.sc164.8 Carica papaya HOM05D005970 ORTHO05D007146 3.4e-27 127.9 124 54.0
Haze_11058 Corylus avellana HOM05D005970 ORTHO05D007146 3.4e-27 127.9 148 46.6
vmacro00561 Vaccinium macrocarpon HOM05D005970 ORTHO05D007146 1.3e-26 125.9 108 55.6
Zm00001eb144480 Zea mays HOM05D005970 ORTHO05D007146 3.7e-26 124.4 166 43.4
Peaxi162Scf00286g00234 Petunia axillaris HOM05D005970 ORTHO05D007146 7.8e-24 116.7 119 48.7
GSVIVG01013576001 Vitis vinifera HOM05D005970 ORTHO05D007146 1.1e-22 112.8 59 74.6
FAN07G1785 Fragaria x ananassa HOM05D005970 ORTHO05D007146 1.5e-14 85.9 126 39.7
SEGI_11354 Sequoiadendron giganteum HOM05D005970 ORTHO05D007146 1.2e-11 76.3 133 39.1
Lalb_Chr06g0164581 Lupinus albus HOM05D005970 ORTHO05D007146 1.1e-09 69.7 146 29.5
Cre07.g322900 Chlamydomonas reinhardtii HOM05D026284 ORTHO05D007146 2.4e-09 68.6 156 29.5
SMO337G0053 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 3.2e-09 68.2 220 29.1
Atru.chr9.1613 Acer truncatum HOM05D005970 ORTHO05D010500 4.1e-09 67.8 93 39.8
SMO199G0009 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 5.4e-09 67.4 69 47.8
Cfa002398 Carpinus fangiana HOM05D004750 ORTHO05D006207 1.6e-08 65.9 203 25.6
Lj1A64T37 Lonicera japonica HOM05D004750 ORTHO05D006207 6.0e-08 63.9 169 30.8
vmacro14850 Vaccinium macrocarpon HOM05D004750 ORTHO05D006207 1.0e-07 63.2 171 28.7
Lj3P247T20 Lonicera japonica HOM05D005970 ORTHO05D007146 1.3e-07 62.8 80 42.5
Rhsim01G0266000 Rhododendron simsii HOM05D004750 ORTHO05D006207 1.7e-07 62.4 168 29.8
Haze_24596 Corylus avellana HOM05D004750 ORTHO05D006207 2.3e-07 62.0 213 23.9
Hma1.2p1_0273F.1_g109910 Hydrangea macrophylla HOM05D004750 ORTHO05D006207 3.0e-07 61.6 167 26.9
HanXRQChr09g0249261 Helianthus annuus HOM05D004750 ORTHO05D006207 3.9e-07 61.2 199 25.6
BcaB04g17273 Brassica carinata HOM05D004750 ORTHO05D006207 6.6e-07 60.5 247 25.9
THA.LOC104802241 Tarenaya hassleriana HOM05D004750 ORTHO05D006207 6.6e-07 60.5 172 29.7
Potri.005G222000 Populus trichocarpa HOM05D004750 ORTHO05D006207 8.7e-07 60.1 171 26.3
CSS0022255 Camellia sinensis var. sinensis HOM05D004750 ORTHO05D006207 1.5e-06 59.3 172 28.5
Carub.0004s2484 Capsella rubella HOM05D004750 ORTHO05D006207 1.5e-06 59.3 172 28.5
CARHR137490 Cardamine hirsuta HOM05D004750 ORTHO05D006207 1.5e-06 59.3 172 29.1
Phvul.007G194900 Phaseolus vulgaris HOM05D004750 ORTHO05D006207 1.5e-06 59.3 172 27.3
Sabra05G0170600 Salix brachista HOM05D004750 ORTHO05D006207 1.5e-06 59.3 172 26.7
VMungo0720G0257 Vigna mungo HOM05D004750 ORTHO05D006207 1.5e-06 59.3 168 27.4
AL4G40900 Arabidopsis lyrata HOM05D004750 ORTHO05D006207 1.9e-06 58.9 172 28.5
Hma1.2p1_0273F.1_g109920 Hydrangea macrophylla HOM05D004750 ORTHO05D006207 1.9e-06 58.9 171 27.5
Nn1g09816 Nelumbo nucifera HOM05D005970 ORTHO05D007146 1.9e-06 58.9 102 37.3
AT2G42450 Arabidopsis thaliana HOM05D004750 ORTHO05D006207 2.5e-06 58.5 172 28.5
arahy.Tifrunner.gnm1.ann1.58RJ2S Arachis hypogaea HOM05D004750 ORTHO05D006207 2.5e-06 58.5 169 30.2
arahy.Tifrunner.gnm1.ann1.I9TYEM Arachis hypogaea HOM05D004750 ORTHO05D006207 2.5e-06 58.5 169 31.4
Pp3c22_2890 Physcomitrium patens HOM05D004750 ORTHO05D006207 2.5e-06 58.5 173 28.3
SEGI_11819 Sequoiadendron giganteum HOM05D004750 ORTHO05D006207 2.5e-06 58.5 173 28.9
DCAR_002681 Daucus carota HOM05D004750 ORTHO05D006207 3.3e-06 58.2 172 28.5
Sc17g0000770 Simmondsia chinensis HOM05D004750 ORTHO05D006207 3.3e-06 58.2 172 29.1
A05p02980 Brassica napus HOM05D004750 ORTHO05D006207 5.6e-06 57.4 173 28.9
Eucgr.B01530 Eucalyptus grandis HOM05D004750 ORTHO05D006207 5.6e-06 57.4 172 29.1
Glyma.10G035200 Glycine max HOM05D004750 ORTHO05D006207 5.6e-06 57.4 168 27.4
C04p03600 Brassica napus HOM05D004750 ORTHO05D006207 7.3e-06 57.0 173 28.9
BolC4t21995H Brassica oleracea HOM05D004750 ORTHO05D006207 7.3e-06 57.0 173 28.9
BraA05t19288Z Brassica rapa HOM05D004750 ORTHO05D006207 7.3e-06 57.0 173 28.3
Thhalv10016471m.g Eutrema salsugineum HOM05D004750 ORTHO05D006207 7.3e-06 57.0 172 27.3
Nitab4.5_0000086g0140 Nicotiana tabacum HOM05D004750 ORTHO05D006207 7.3e-06 57.0 190 25.8
Aa31LG1G24270 Aethionema arabicum HOM05D004750 ORTHO05D006207 9.6e-06 56.6 172 27.3
Glyma.13G121500 Glycine max HOM05D004750 ORTHO05D006207 9.6e-06 56.6 168 28.0
Lj3A252T11 Lonicera japonica HOM05D005970 ORTHO05D007146 9.6e-06 56.6 33 69.7
Sp4g24590 Schrenkiella parvula HOM05D004750 ORTHO05D006207 9.6e-06 56.6 196 26.5


User provided reference genes

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