Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001146 Vanilla planifolia HOM05D000175 ORTHO05D001341 8.4e-54 213.4 104 100.0
HPP92_001061 Vanilla planifolia HOM05D000175 ORTHO05D001341 9.3e-37 156.8 74 98.6
Zm00001eb014050 Zea mays HOM05D000175 ORTHO05D001341 9.7e-18 93.6 85 54.1
Os03g0300600 Oryza sativa ssp. japonica HOM05D000175 ORTHO05D001341 1.1e-16 90.1 69 60.9
Hund21736 Selenicereus undatus HOM05D000175 ORTHO05D001341 8.5e-14 80.5 89 46.1
CANSAT54G1446 Cannabis sativa HOM05D000175 ORTHO05D001341 3.2e-13 78.6 87 47.1
Eucgr.B02081 Eucalyptus grandis HOM05D000175 ORTHO05D001341 1.6e-12 76.3 75 46.7
PGR083G1500 Punica granatum HOM05D000175 ORTHO05D001341 1.6e-12 76.3 69 52.2
Eucgr.L02648 Eucalyptus grandis HOM05D000175 ORTHO05D001341 4.6e-12 74.7 75 45.3
Aa31LG2G11560 Aethionema arabicum HOM05D000175 ORTHO05D001341 6.1e-12 74.3 69 52.2
Gohir.D11G281600 Gossypium hirsutum HOM05D000175 ORTHO05D001341 7.9e-12 73.9 70 50.0
Gorai.007G304100 Gossypium raimondii HOM05D000175 ORTHO05D001341 7.9e-12 73.9 70 50.0
MBI18_g04580_MAGBIO Magnolia biondii HOM05D000175 ORTHO05D001341 7.9e-12 73.9 71 50.7
CiPaw.08G157200 Carya illinoinensis HOM05D000175 ORTHO05D001341 1.0e-11 73.6 57 56.1
Potri.013G010800 Populus trichocarpa HOM05D000175 ORTHO05D001341 1.0e-11 73.6 89 48.3
THA.LOC104820698 Tarenaya hassleriana HOM05D000175 ORTHO05D001341 1.0e-11 73.6 69 52.2
Sabra13G0009300 Salix brachista HOM05D000175 ORTHO05D001341 1.4e-11 73.2 59 55.9
arahy.Tifrunner.gnm1.ann1.374HIW Arachis hypogaea HOM05D000175 ORTHO05D001341 2.3e-11 72.4 88 45.5
Cpa.g.sc48.135 Carica papaya HOM05D000175 ORTHO05D001341 2.3e-11 72.4 69 50.7
Gohir.A11G271400 Gossypium hirsutum HOM05D000175 ORTHO05D001341 2.3e-11 72.4 70 48.6
BcaB04g20157 Brassica carinata HOM05D000175 ORTHO05D001341 3.0e-11 72.0 59 54.2
Cfa006680 Carpinus fangiana HOM05D000175 ORTHO05D001341 3.0e-11 72.0 75 50.7
Duzib177G1125 Durio zibethinus HOM05D000175 ORTHO05D001341 3.9e-11 71.6 69 49.3
VMungo1383G0370 Vigna mungo HOM05D000175 ORTHO05D001341 3.9e-11 71.6 69 49.3
Aqoxy2G02820 Aquilegia oxysepala HOM05D000175 ORTHO05D001341 5.1e-11 71.2 69 46.4
arahy.Tifrunner.gnm1.ann1.Q2KLD3 Arachis hypogaea HOM05D000175 ORTHO05D001341 5.1e-11 71.2 70 48.6
Glyma.19G229700 Glycine max HOM05D000175 ORTHO05D001341 5.1e-11 71.2 67 50.7
TAR633G1398 Trochodendron aralioides HOM05D000175 ORTHO05D001341 5.1e-11 71.2 85 43.5
Ah.06g189060 Amaranthus hybridus HOM05D000175 ORTHO05D001341 6.7e-11 70.9 69 49.3
A01p27370 Brassica napus HOM05D000175 ORTHO05D001341 6.7e-11 70.9 55 56.4
BraA01t02877Z Brassica rapa HOM05D000175 ORTHO05D001341 6.7e-11 70.9 55 56.4
Ca_09319_v3 Cicer arietinum L. HOM05D000175 ORTHO05D001341 6.7e-11 70.9 69 49.3
Medtr7g112360 Medicago truncatula HOM05D000175 ORTHO05D001341 6.7e-11 70.9 69 49.3
Psat3g012600 Pisum sativum HOM05D000175 ORTHO05D001341 6.7e-11 70.9 74 47.3
QL03p018046 Quercus lobata HOM05D000175 ORTHO05D001341 6.7e-11 70.9 69 49.3
RcHm_v2.0_Chr3g0456731 Rosa chinensis HOM05D000175 ORTHO05D001341 6.7e-11 70.9 69 47.8
MD04G1195900 Malus domestica HOM05D000175 ORTHO05D001341 8.8e-11 70.5 55 56.4
Phvul.001G226300 Phaseolus vulgaris HOM05D000175 ORTHO05D001341 8.8e-11 70.5 69 47.8
CDE02G1526 Ceratophyllum demersum HOM05D000175 ORTHO05D001341 1.1e-10 70.1 80 46.2
Manes.08G113000 Manihot esculenta HOM05D000175 ORTHO05D001341 1.1e-10 70.1 69 47.8
Potri.005G020300 Populus trichocarpa HOM05D000175 ORTHO05D001341 1.1e-10 70.1 69 47.8
AUR62000707 Chenopodium quinoa HOM05D000175 ORTHO05D001341 1.5e-10 69.7 74 45.9
AUR62005258 Chenopodium quinoa HOM05D000175 ORTHO05D001341 1.5e-10 69.7 74 45.9
FAN14G3241 Fragaria x ananassa HOM05D000175 ORTHO05D001341 1.5e-10 69.7 67 49.3
MD12G1208600 Malus domestica HOM05D000175 ORTHO05D001341 1.5e-10 69.7 69 47.8
BcaC09g49566 Brassica carinata HOM05D000175 ORTHO05D001341 2.0e-10 69.3 55 54.5
C01p35190 Brassica napus HOM05D000175 ORTHO05D001341 2.0e-10 69.3 55 54.5
BolC1t03478H Brassica oleracea HOM05D000175 ORTHO05D001341 2.0e-10 69.3 55 54.5
Ciclev10002746m.g Citrus clementina HOM05D000175 ORTHO05D001341 2.0e-10 69.3 70 48.6
FAN05G1575 Fragaria x ananassa HOM05D000175 ORTHO05D001341 2.0e-10 69.3 67 49.3
TPR.G1618 Trifolium pratense HOM05D000175 ORTHO05D001341 2.0e-10 69.3 69 47.8
Atru.chr2.134 Acer truncatum HOM05D000175 ORTHO05D001341 2.5e-10 68.9 56 53.6
Sabra05G0026300 Salix brachista HOM05D000175 ORTHO05D001341 2.5e-10 68.9 69 46.4
AL1G65910 Arabidopsis lyrata HOM05D000175 ORTHO05D001341 3.3e-10 68.6 55 52.7
Carub.0002s0786 Capsella rubella HOM05D000175 ORTHO05D001341 3.3e-10 68.6 55 54.5
HPP92_002020 Vanilla planifolia HOM05D000175 ORTHO05D001341 3.3e-10 68.6 39 79.5
EL10Ac4g09848 Beta vulgaris HOM05D000175 ORTHO05D001341 4.3e-10 68.2 69 47.8
CsaV3_2G006870 Cucumis sativus L. HOM05D000175 ORTHO05D001341 5.7e-10 67.8 59 50.8
Sed0019310 Sechium edule HOM05D000175 ORTHO05D001341 7.4e-10 67.4 64 46.9
THA.LOC104805910 Tarenaya hassleriana HOM05D000175 ORTHO05D001341 7.4e-10 67.4 58 50.0
GSVIVG01031207001 Vitis vinifera HOM05D000175 ORTHO05D001341 7.4e-10 67.4 55 56.4
AT1G56300 Arabidopsis thaliana HOM05D000175 ORTHO05D001341 9.7e-10 67.0 55 50.9
Duzib106G0708 Durio zibethinus HOM05D000175 ORTHO05D001341 9.7e-10 67.0 53 52.8
Lalb_Chr18g0045991 Lupinus albus HOM05D000175 ORTHO05D001341 9.7e-10 67.0 71 46.5
ClCG02G015140 Citrullus lanatus HOM05D000175 ORTHO05D001341 1.3e-09 66.6 59 49.2
MELO3C004203.2 Cucumis melo HOM05D000175 ORTHO05D001341 1.3e-09 66.6 59 49.2
Gohir.A08G207100 Gossypium hirsutum HOM05D000175 ORTHO05D001341 1.3e-09 66.6 67 52.2
Gohir.D08G223700 Gossypium hirsutum HOM05D000175 ORTHO05D001341 1.3e-09 66.6 67 50.7
Lj1g0000429 Lotus japonicus HOM05D000175 ORTHO05D001341 1.3e-09 66.6 57 50.9
Thecc.05G320200 Theobroma cacao HOM05D000175 ORTHO05D001341 1.3e-09 66.6 55 52.7
CDE08G0006 Ceratophyllum demersum HOM05D000175 ORTHO05D001341 2.8e-09 65.5 67 50.7
Sc09g0002750 Simmondsia chinensis HOM05D000175 ORTHO05D001341 2.8e-09 65.5 69 44.9
TWI56G1152 Tripterygium wilfordii HOM05D000175 ORTHO05D001341 4.8e-09 64.7 69 46.4
CAN.G1298.3 Capsicum annuum HOM05D000175 ORTHO05D001341 6.3e-09 64.3 73 42.5
RcHm_v2.0_Chr4g0441231 Rosa chinensis HOM05D000175 ORTHO05D001341 1.1e-08 63.5 66 47.0
PGSC0003DMG400030542 Solanum tuberosum HOM05D000175 ORTHO05D001341 1.1e-08 63.5 59 49.2
Nitab4.5_0000742g0110 Nicotiana tabacum HOM05D000175 ORTHO05D001341 1.4e-08 63.2 59 49.2
Peaxi162Scf00159g00048 Petunia axillaris HOM05D000175 ORTHO05D001341 1.4e-08 63.2 59 49.2
Sopen05g003970 Solanum pennellii HOM05D000175 ORTHO05D001341 2.4e-08 62.4 73 43.8
Gorai.004G237600 Gossypium raimondii HOM05D000175 ORTHO05D001341 3.1e-08 62.0 68 50.0
ATR0796G102 Amborella trichopoda HOM05D000175 ORTHO05D001341 4.1e-08 61.6 63 39.7
Gohir.D02G144900 Gossypium hirsutum HOM05D000175 ORTHO05D001341 4.1e-08 61.6 59 45.8
Gorai.005G162300 Gossypium raimondii HOM05D000175 ORTHO05D001341 4.1e-08 61.6 59 45.8
Eucgr.B02899 Eucalyptus grandis HOM05D000175 ORTHO05D001341 5.3e-08 61.2 65 43.1
Rhsim09G0067100 Rhododendron simsii HOM05D000175 ORTHO05D001341 5.3e-08 61.2 58 46.6
Manes.17G076700 Manihot esculenta HOM05D000175 ORTHO05D001341 6.9e-08 60.8 66 42.4
CiPaw.05G249500 Carya illinoinensis HOM05D000175 ORTHO05D001341 9.1e-08 60.5 59 42.4
vmacro00418 Vaccinium macrocarpon HOM05D000175 ORTHO05D001341 9.1e-08 60.5 56 48.2
FvH4_4g32391 Fragaria vesca HOM05D000175 ORTHO05D001341 1.2e-07 60.1 66 42.4
FAN12G1310 Fragaria x ananassa HOM05D000175 ORTHO05D001341 1.2e-07 60.1 66 42.4
Potri.010G113400 Populus trichocarpa HOM05D000175 ORTHO05D001341 1.2e-07 60.1 73 38.4
unitig_699.g19532 Utricularia gibba HOM05D000175 ORTHO05D001341 1.5e-07 59.7 73 41.1
Psat7g127960 Pisum sativum HOM05D000175 ORTHO05D001341 2.0e-07 59.3 73 42.5
arahy.Tifrunner.gnm1.ann1.42V4U6 Arachis hypogaea HOM05D000175 ORTHO05D001341 2.6e-07 58.9 59 42.4
AUR62038512 Chenopodium quinoa HOM05D000175 ORTHO05D001341 2.6e-07 58.9 59 42.4
FAN17G2001 Fragaria x ananassa HOM05D000175 ORTHO05D001341 2.6e-07 58.9 59 44.1
Glyma.03G232700 Glycine max HOM05D000175 ORTHO05D001341 2.6e-07 58.9 51 52.9
PGR102G2923 Punica granatum HOM05D000175 ORTHO05D001341 2.6e-07 58.9 72 36.1
Sc14g0007140 Simmondsia chinensis HOM05D000175 ORTHO05D001341 2.6e-07 58.9 58 44.8
MD13G1025600 Malus domestica HOM05D000175 ORTHO05D001341 3.4e-07 58.5 60 48.3
QL01p001757 Quercus lobata HOM05D000175 ORTHO05D001341 3.4e-07 58.5 72 37.5
FvH4_6g07140 Fragaria vesca HOM05D000175 ORTHO05D001341 4.5e-07 58.2 51 51.0
PSO170G3504 Papaver somniferum HOM05D000175 ORTHO05D001341 4.5e-07 58.2 55 45.5
AUR62014208 Chenopodium quinoa HOM05D000175 ORTHO05D001341 5.9e-07 57.8 59 40.7
FAN07G2498 Fragaria x ananassa HOM05D000175 ORTHO05D001341 5.9e-07 57.8 66 40.9
FAN22G0562 Fragaria x ananassa HOM05D000175 ORTHO05D001341 5.9e-07 57.8 66 40.9
Hma1.2p1_0346F.1_g131340 Hydrangea macrophylla HOM05D000175 ORTHO05D001341 7.7e-07 57.4 58 43.1
Hund24980 Selenicereus undatus HOM05D000175 ORTHO05D001341 7.7e-07 57.4 73 39.7
Actinidia17751 Actinidia chinensis HOM05D001314 ORTHO05D001341 1.0e-06 57.0 72 40.3
arahy.Tifrunner.gnm1.ann1.IRIV1V Arachis hypogaea HOM05D000175 ORTHO05D001341 1.3e-06 56.6 59 40.7
EL10Ac6g14218 Beta vulgaris HOM05D000175 ORTHO05D001341 1.3e-06 56.6 66 39.4
FAN02G4256 Fragaria x ananassa HOM05D000175 ORTHO05D001341 1.3e-06 56.6 92 37.0
MD16G1028400 Malus domestica HOM05D000175 ORTHO05D001341 1.3e-06 56.6 56 46.4
Nn4g24139 Nelumbo nucifera HOM05D000175 ORTHO05D001341 1.3e-06 56.6 76 44.7
TAR017G0003 Trochodendron aralioides HOM05D000175 ORTHO05D001341 1.3e-06 56.6 58 41.4
FAN09G3577 Fragaria x ananassa HOM05D000175 ORTHO05D001341 1.7e-06 56.2 79 39.2
Thecc.02G281300 Theobroma cacao HOM05D000175 ORTHO05D001341 1.7e-06 56.2 59 40.7
Zm00001eb396520 Zea mays HOM05D000175 ORTHO05D001341 1.7e-06 56.2 69 44.9
Ca_18726_v3 Cicer arietinum L. HOM05D000175 ORTHO05D001341 2.2e-06 55.8 59 42.4
MBI10_g08544_MAGBIO Magnolia biondii HOM05D000175 ORTHO05D001341 2.2e-06 55.8 72 37.5
Ciclev10016883m.g Citrus clementina HOM05D000175 ORTHO05D001341 3.8e-06 55.1 58 43.1
Medtr4g085070 Medicago truncatula HOM05D000175 ORTHO05D001341 5.0e-06 54.7 59 40.7
Prupe.1G324300 Prunus persica HOM05D000175 ORTHO05D001341 5.0e-06 54.7 59 42.4
Cfa008607 Carpinus fangiana HOM05D000175 ORTHO05D001341 6.5e-06 54.3 59 40.7
COL.COLO4_20479 Corchorus olitorius HOM05D000175 ORTHO05D001341 6.5e-06 54.3 59 40.7
Phvul.002G093000 Phaseolus vulgaris HOM05D000175 ORTHO05D001341 6.5e-06 54.3 58 41.4
VMungo0251G3451 Vigna mungo HOM05D000175 ORTHO05D001341 6.5e-06 54.3 58 44.8
ClCG09G001230 Citrullus lanatus HOM05D000175 ORTHO05D001341 8.5e-06 53.9 64 39.1
Lsat_1_v5_gn_4_14581 Lactuca sativa HOM05D000175 ORTHO05D001341 8.5e-06 53.9 53 47.2
Lj4g0025251 Lotus japonicus HOM05D000175 ORTHO05D001341 8.5e-06 53.9 59 42.4
Nn3g21586 Nelumbo nucifera HOM05D000175 ORTHO05D001341 8.5e-06 53.9 66 40.9


User provided reference genes

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