Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 6.9e-130 467.2 223 100.0
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 2.0e-97 359.4 213 78.4
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 1.7e-96 356.3 224 73.2
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 1.7e-96 356.3 223 70.9
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 1.5e-95 353.2 215 74.4
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 2.5e-95 352.4 213 71.8
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 9.4e-95 350.5 224 73.7
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 1.2e-94 350.1 201 76.6
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 1.6e-94 349.7 211 73.5
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 2.7e-94 349.0 213 73.7
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 3.6e-94 348.6 224 70.1
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 4.7e-94 348.2 209 74.2
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 4.7e-94 348.2 213 71.8
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 6.1e-94 347.8 219 72.6
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 2.3e-93 345.9 209 73.7
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 2.3e-93 345.9 225 71.6
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 3.0e-93 345.5 221 71.5
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 6.7e-93 344.4 220 69.5
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 6.7e-93 344.4 224 71.0
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 8.8e-93 344.0 209 74.6
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 1.5e-92 343.2 209 75.1
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 1.5e-92 343.2 213 71.8
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 1.5e-92 343.2 216 73.1
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 2.0e-92 342.8 221 70.6
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 2.0e-92 342.8 222 70.3
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 2.6e-92 342.4 212 74.1
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 3.3e-92 342.0 225 70.2
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 3.3e-92 342.0 206 75.2
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 3.3e-92 342.0 223 71.3
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 3.3e-92 342.0 214 72.4
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 5.7e-92 341.3 217 73.3
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 7.5e-92 340.9 213 71.8
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 9.7e-92 340.5 214 72.9
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 1.3e-91 340.1 213 71.8
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 1.3e-91 340.1 212 74.1
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 1.7e-91 339.7 213 71.4
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 1.7e-91 339.7 212 72.2
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 3.7e-91 338.6 224 71.0
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 3.7e-91 338.6 223 69.1
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 3.7e-91 338.6 207 72.0
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 3.7e-91 338.6 204 76.0
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 4.8e-91 338.2 209 70.3
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 1.8e-90 336.3 222 69.4
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 3.1e-90 335.5 238 67.6
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 4.1e-90 335.1 225 68.9
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 5.3e-90 334.7 218 67.9
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 5.3e-90 334.7 225 68.9
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 1.2e-89 333.6 199 73.9
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 1.6e-89 333.2 205 74.1
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 1.6e-89 333.2 205 73.7
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 2.0e-89 332.8 212 71.2
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 2.0e-89 332.8 204 75.0
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 2.0e-89 332.8 225 68.9
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 2.7e-89 332.4 214 71.5
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 2.7e-89 332.4 216 70.8
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 3.5e-89 332.0 227 70.0
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 4.5e-89 331.6 214 68.7
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 5.9e-89 331.3 225 68.4
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 2.9e-88 328.9 214 71.0
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 5.0e-88 328.2 225 67.6
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 6.5e-88 327.8 212 71.2
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 3.2e-87 325.5 225 67.1
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 7.2e-87 324.3 209 69.4
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 9.4e-87 323.9 224 66.1
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 8.0e-86 320.9 222 66.7
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 1.0e-85 320.5 202 73.3
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 1.5e-84 316.6 201 73.6
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 1.5e-84 316.6 213 71.4
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 2.6e-84 315.8 201 73.6
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 4.4e-84 315.1 207 71.5
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 4.4e-84 315.1 207 71.5
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 4.4e-84 315.1 212 71.7
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 5.7e-84 314.7 207 71.5
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 5.7e-84 314.7 206 71.4
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 1.7e-83 313.2 210 71.0
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 1.7e-83 313.2 201 73.1
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 5.4e-82 308.1 210 70.0
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 5.4e-82 308.1 210 70.0
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 7.7e-81 304.3 183 72.1
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 5.0e-80 301.6 178 78.1
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 1.5e-79 300.1 226 64.2
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 2.7e-78 295.8 178 78.1
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 2.3e-77 292.7 166 77.1
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 2.4e-74 282.7 231 56.7
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 1.7e-72 276.6 213 57.7
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 1.7e-72 276.6 169 75.1
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 3.8e-72 275.4 180 65.0
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 1.1e-71 273.9 207 60.9
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 1.3e-67 260.4 162 69.1
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 6.4e-67 258.1 203 65.5
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 2.0e-65 253.1 188 55.9
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 2.3e-64 249.6 171 64.9
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 1.2e-60 237.3 213 58.7
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 3.2e-58 229.2 223 51.6
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 2.3e-56 223.0 205 49.3
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 5.0e-56 221.9 140 70.7
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 8.1e-54 214.5 130 74.6
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 1.8e-53 213.4 130 69.2
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 1.2e-46 190.7 138 60.1
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 2.2e-43 179.9 158 48.7
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 8.4e-43 177.9 115 71.3
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 5.4e-42 175.3 105 73.3
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 2.0e-36 156.8 219 34.7
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 1.1e-34 151.0 205 36.6
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 2.7e-33 146.4 128 58.6
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 1.3e-32 144.1 128 57.8
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 2.8e-30 136.3 84 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 6.9e-29 131.7 110 50.0
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 4.5e-28 129.0 79 68.4
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 1.2e-25 120.9 153 33.3
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 1.3e-24 117.5 72 66.7
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 1.4e-21 107.5 73 60.3
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 3.2e-18 96.3 50 80.0
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 3.2e-18 96.3 50 80.0
BolC8t50296H Brassica oleracea HOM05D006727 ORTHO05D008408 2.3e-16 90.1 71 62.0
Carub.0007s3202 Capsella rubella HOM05D006727 ORTHO05D008408 1.0e-11 74.7 46 82.6
MD12G1088300 Malus domestica HOM05D006727 ORTHO05D008408 5.5e-10 68.9 70 52.9
A03p48380 Brassica napus HOM05D023373 ORTHO05D024557 2.8e-06 56.6 88 42.0


User provided reference genes

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