Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 5.1e-196 687.6 350 100.0
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 6.1e-157 557.8 320 85.6
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 1.4e-156 556.6 331 82.8
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 6.7e-156 554.3 316 84.5
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.1e-155 553.5 330 82.1
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.6e-155 552.4 330 81.8
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 3.7e-154 548.5 320 84.4
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.8e-153 546.2 335 80.6
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.8e-153 546.2 345 80.0
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 2.4e-153 545.8 345 78.6
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 9.1e-153 543.9 335 80.3
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 9.1e-153 543.9 346 77.7
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.2e-152 543.5 346 77.7
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 2.6e-152 542.3 336 79.8
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 3.5e-152 542.0 320 82.5
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 4.5e-152 541.6 320 81.2
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 5.9e-152 541.2 334 79.3
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 7.7e-152 540.8 320 82.2
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 1.0e-151 540.4 330 81.5
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.0e-151 540.4 320 80.9
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.0e-151 540.4 320 81.9
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.7e-151 539.7 334 79.3
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 1.1e-150 537.0 320 81.2
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.5e-150 535.8 331 79.5
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 3.2e-150 535.4 331 79.8
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 5.5e-150 534.6 349 75.9
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 7.2e-150 534.3 318 81.4
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 1.2e-149 533.5 340 77.6
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.6e-149 533.1 319 81.5
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 2.1e-149 532.7 320 80.3
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.6e-149 531.9 333 78.7
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 3.0e-148 528.9 335 77.9
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 5.2e-148 528.1 321 80.7
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 6.7e-148 527.7 331 79.2
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.2e-147 526.9 320 80.0
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.5e-147 526.6 340 77.1
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 4.4e-147 525.0 340 77.6
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 4.4e-147 525.0 343 77.0
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 4.4e-147 525.0 320 81.2
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 9.7e-147 523.9 340 77.4
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.7e-146 523.1 340 77.1
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 8.2e-146 520.8 313 81.8
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 1.1e-145 520.4 320 79.4
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.4e-145 520.0 340 76.8
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.4e-145 520.0 340 76.8
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.8e-145 519.6 340 77.1
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 4.1e-145 518.5 330 77.3
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 5.3e-145 518.1 350 73.7
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 7.0e-145 517.7 350 73.7
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 7.0e-145 517.7 318 79.6
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 9.1e-145 517.3 317 77.6
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.2e-144 516.9 320 80.0
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 2.0e-144 516.2 335 77.0
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.0e-144 516.2 318 79.9
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 2.7e-144 515.8 336 75.3
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 2.7e-144 515.8 318 78.6
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.7e-144 515.8 318 78.6
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 7.7e-144 514.2 317 77.9
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 7.7e-144 514.2 323 77.7
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.0e-143 513.8 330 75.5
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 1.0e-143 513.8 321 78.2
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-143 513.5 332 75.9
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.3e-143 513.5 317 77.3
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 2.2e-143 512.7 371 69.8
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 2.2e-143 512.7 316 80.1
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 2.9e-143 512.3 318 79.2
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 3.8e-143 511.9 373 69.4
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.8e-143 511.9 321 77.9
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 6.5e-143 511.1 357 71.7
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 6.5e-143 511.1 336 75.6
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 6.5e-143 511.1 309 79.6
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 8.5e-143 510.8 326 76.4
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 2.5e-142 509.2 371 69.5
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 7.2e-142 507.7 333 75.7
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 2.1e-141 506.1 317 77.3
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 4.7e-141 505.0 320 77.5
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 6.1e-141 504.6 317 76.3
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.0e-141 504.2 345 73.0
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.8e-140 503.1 311 79.4
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.8e-140 503.1 311 79.4
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 2.0e-139 499.6 350 73.1
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 2.0e-139 499.6 317 76.7
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 2.0e-139 499.6 340 73.2
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 2.6e-139 499.2 319 76.5
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 2.2e-138 496.1 301 80.7
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.8e-138 495.7 345 72.5
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.1e-137 493.8 333 74.5
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 3.1e-137 492.3 307 79.8
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 2.7e-136 489.2 332 70.8
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 2.7e-136 489.2 325 72.3
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 3.5e-136 488.8 386 66.8
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.5e-131 473.4 315 73.0
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 2.0e-131 473.0 343 72.0
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.6e-128 463.4 349 66.8
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 5.9e-128 461.5 320 71.6
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 3.3e-126 455.7 349 65.3
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.3e-122 443.7 250 87.2
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 4.9e-122 441.8 325 67.1
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 2.4e-121 439.5 329 64.4
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 6.2e-117 424.9 242 84.7
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 2.0e-115 419.9 333 67.6
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 2.0e-115 419.9 247 81.4
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.6e-115 419.5 250 80.8
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 3.7e-114 415.6 245 82.0
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 5.0e-111 405.2 302 67.9
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 2.2e-106 389.8 318 64.5
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 3.7e-106 389.0 372 58.3
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 4.9e-106 388.7 317 62.5
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 7.1e-105 384.8 242 75.2
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.7e-95 353.6 311 58.8
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 3.8e-90 335.9 188 83.5
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 6.9e-84 315.1 232 67.7
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 3.0e-71 273.1 324 45.7
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 5.6e-70 268.9 206 68.0
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 8.4e-66 255.0 263 49.8
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 7.1e-65 251.9 168 70.2
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 3.5e-64 249.6 315 47.9
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 2.6e-59 233.4 134 80.6
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 4.5e-59 232.6 134 79.9
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 4.6e-56 222.6 127 82.7
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 7.9e-56 221.9 178 62.9
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-38 164.9 132 65.9
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 3.3e-38 163.3 132 65.2
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 2.4e-36 157.1 121 66.9
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-35 154.8 162 49.4
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.5e-35 152.9 125 64.8
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.5e-35 152.9 125 64.8
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.5e-35 152.9 135 61.5
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 5.9e-35 152.5 98 78.6
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 5.0e-34 149.4 125 63.2
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 1.4e-31 141.4 187 49.2
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 3.0e-31 140.2 105 66.7
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 9.4e-25 118.6 73 80.8
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 4.0e-23 113.2 95 62.1
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.7e-21 107.8 78 66.7
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 1.2e-19 101.7 167 43.1
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 1.0e-18 98.6 66 77.3
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 5.0e-18 96.3 67 74.6
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.5e-17 94.7 60 75.0
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.5e-17 94.7 76 64.5
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 8.0e-16 89.0 60 71.7
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 8.9e-15 85.5 64 64.1
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 1.5e-14 84.7 210 30.5
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.7e-11 73.9 41 82.9
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 1.1e-09 68.6 51 68.6
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 5.6e-09 66.2 50 68.0
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 2.1e-08 64.3 177 28.8
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 8.0e-08 62.4 163 30.7
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.0e-07 62.0 59 52.5
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 4.0e-07 60.1 56 55.4
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 6.8e-07 59.3 164 28.0


User provided reference genes

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