Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.8e-125 452.6 229 100.0
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 2.6e-79 299.3 223 65.9
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 3.3e-79 298.9 223 66.4
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 7.4e-79 297.7 213 67.6
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 7.4e-79 297.7 229 66.8
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 1.3e-78 297.0 214 69.2
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.2e-78 296.2 226 68.1
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.8e-78 295.0 226 67.7
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 6.3e-78 294.7 226 67.3
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.1e-77 292.4 228 63.6
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 5.3e-77 291.6 228 65.4
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 5.3e-77 291.6 223 63.2
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 5.3e-77 291.6 232 64.7
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 5.3e-77 291.6 214 65.0
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 9.1e-77 290.8 230 64.3
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.2e-76 290.4 225 64.9
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.2e-76 290.4 224 65.2
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 1.5e-76 290.0 227 65.2
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 2.6e-76 289.3 224 63.8
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 2.6e-76 289.3 213 67.1
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 7.7e-76 287.7 227 65.6
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 7.7e-76 287.7 221 67.0
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 7.7e-76 287.7 223 61.4
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.0e-75 287.3 221 65.2
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.3e-75 287.0 215 68.8
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.3e-75 287.0 214 67.8
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.3e-75 287.0 232 63.4
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 1.3e-75 287.0 227 64.8
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.7e-75 286.6 234 63.2
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 2.2e-75 286.2 227 63.9
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 2.9e-75 285.8 221 64.3
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.9e-75 285.8 225 63.6
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 3.8e-75 285.4 221 63.3
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 5.0e-75 285.0 210 68.1
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 6.5e-75 284.6 233 63.5
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 8.5e-75 284.3 221 62.0
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 8.5e-75 284.3 225 63.1
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.1e-74 283.9 226 63.3
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.1e-74 283.9 221 65.6
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 1.1e-74 283.9 228 61.0
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.1e-74 283.9 225 64.4
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.1e-74 283.9 233 62.2
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-74 283.5 226 62.8
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.9e-74 283.1 226 62.8
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.2e-74 282.3 216 64.8
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.2e-74 282.3 227 64.8
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 3.2e-74 282.3 227 62.1
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 4.2e-74 282.0 226 60.6
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 5.5e-74 281.6 227 61.2
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 5.5e-74 281.6 223 62.3
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 7.2e-74 281.2 216 67.6
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 7.2e-74 281.2 227 63.0
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 9.4e-74 280.8 230 60.0
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.2e-73 280.4 211 65.9
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 2.1e-73 279.6 227 61.7
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 2.1e-73 279.6 232 62.5
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 2.1e-73 279.6 213 62.9
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 2.1e-73 279.6 207 67.6
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 2.1e-73 279.6 223 62.8
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 2.1e-73 279.6 224 63.4
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 2.1e-73 279.6 217 63.6
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 3.6e-73 278.9 221 62.0
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 3.6e-73 278.9 208 64.4
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.6e-73 278.9 227 63.9
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 3.6e-73 278.9 241 58.1
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 4.7e-73 278.5 217 62.7
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 4.7e-73 278.5 228 61.0
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 6.1e-73 278.1 221 63.3
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 6.1e-73 278.1 221 61.1
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 6.1e-73 278.1 224 61.2
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 6.1e-73 278.1 207 66.7
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 8.0e-73 277.7 221 60.6
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.0e-72 277.3 239 62.3
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 1.8e-72 276.6 221 61.5
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.8e-72 276.6 222 62.6
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-72 276.2 187 71.1
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-72 276.2 187 71.1
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 2.3e-72 276.2 212 63.2
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 2.3e-72 276.2 219 63.0
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 3.0e-72 275.8 245 59.6
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.0e-72 275.8 227 64.3
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 3.0e-72 275.8 223 63.2
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 3.9e-72 275.4 223 61.9
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.1e-71 273.9 221 60.6
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.1e-71 273.9 223 61.0
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-71 273.9 223 62.8
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.5e-71 273.5 215 62.3
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.5e-71 273.5 218 62.8
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 2.0e-71 273.1 221 60.2
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 2.0e-71 273.1 221 60.2
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.0e-71 273.1 219 60.3
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.0e-71 273.1 225 60.4
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 2.6e-71 272.7 238 61.8
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 3.3e-71 272.3 258 56.2
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.4e-71 271.9 223 61.0
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 7.4e-71 271.2 223 62.3
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 7.4e-71 271.2 223 61.0
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 9.7e-71 270.8 221 62.9
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.3e-70 270.4 219 62.6
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 1.3e-70 270.4 218 60.6
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.7e-70 270.0 223 59.6
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 2.2e-70 269.6 220 61.8
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 4.8e-70 268.5 283 53.7
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 8.2e-70 267.7 211 62.6
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.4e-69 266.9 205 63.4
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 3.1e-69 265.8 227 61.7
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 3.1e-69 265.8 214 62.6
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 4.1e-69 265.4 219 61.2
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 7.7e-68 261.2 229 60.3
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.7e-67 260.0 207 61.4
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 5.0e-67 258.5 216 60.2
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 8.5e-67 257.7 222 57.2
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 2.5e-66 256.1 223 60.5
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 3.6e-65 252.3 202 63.4
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 1.8e-64 250.0 221 60.6
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 3.0e-64 249.2 221 60.2
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 3.0e-64 249.2 226 60.2
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 5.2e-64 248.4 172 70.3
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.2e-63 247.3 172 72.1
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.2e-62 243.0 225 56.9
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.1e-61 239.2 166 69.9
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.5e-60 235.3 312 44.6
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 3.8e-59 232.3 223 57.4
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 6.8e-56 221.5 213 54.9
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 3.4e-55 219.2 223 53.4
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 3.4e-55 219.2 212 56.6
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 9.8e-55 217.6 211 53.1
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 9.8e-55 217.6 227 48.0
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 4.8e-54 215.3 252 45.2
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.4e-53 213.0 232 54.3
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 3.1e-53 212.6 225 54.2
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 3.5e-52 209.1 179 55.3
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.7e-51 206.8 124 75.8
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.3e-51 206.5 212 51.9
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 1.1e-50 204.1 125 75.2
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 7.2e-50 201.4 176 56.8
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.6e-49 200.3 147 66.7
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.0e-48 196.1 116 76.7
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.1e-45 187.6 120 70.8
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 1.4e-45 187.2 171 57.3
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 2.3e-43 179.9 168 58.3
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 2.9e-43 179.5 168 55.4
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 3.3e-42 176.0 220 45.9
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 3.1e-40 169.5 104 71.2
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.4e-37 160.6 215 42.3
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 4.6e-36 155.6 288 34.7
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.3e-35 154.1 145 54.5
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 7.3e-34 148.3 186 42.5
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.0e-31 140.2 181 45.9
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 5.8e-31 138.7 167 50.3
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.3e-27 127.5 81 72.8
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.8e-23 112.1 114 52.6
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 3.7e-22 109.4 74 67.6
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.6e-20 104.0 82 61.0
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 3.5e-20 102.8 152 42.1
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 3.0e-19 99.8 67 67.2
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 3.0e-19 99.8 59 76.3
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 2.5e-18 96.7 81 58.0
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 4.3e-18 95.9 72 62.5
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 4.3e-18 95.9 170 36.5
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.2e-17 94.4 59 78.0
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 3.6e-17 92.8 204 35.3
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.1e-16 91.3 91 54.9
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.5e-15 87.4 173 36.4
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 3.4e-15 86.3 91 51.6
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 4.9e-14 82.4 81 53.1
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.9e-13 80.5 142 35.9
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.6e-12 77.4 102 44.1
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 4.8e-09 65.9 58 55.2
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 2.6e-07 60.1 178 29.8
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 3.4e-07 59.7 51 54.9
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 2.9e-06 56.6 41 63.4


User provided reference genes

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