Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 2465.3 1309 100.0
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1498.0 1375 59.2
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 1489.2 1370 58.5
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1434.9 1387 57.3
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1429.1 1373 57.5
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 1426.4 1375 58.4
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 1409.0 1369 56.4
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1407.9 1364 57.9
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 1406.3 1301 59.3
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 1401.7 1389 57.2
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1398.3 1358 55.9
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1397.1 1362 56.7
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 1397.1 1363 57.4
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 1392.5 1358 58.0
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1392.1 1357 56.5
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1391.7 1358 57.7
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 1390.9 1371 57.6
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1389.4 1358 57.9
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1387.5 1357 57.8
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1384.4 1358 57.4
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1382.1 1372 55.6
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1380.5 1358 56.3
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1379.4 1363 55.3
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 1378.2 1358 57.5
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 1375.1 1379 55.9
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 1368.6 1370 54.4
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 1368.6 1147 60.8
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 1366.3 1147 61.2
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1362.4 1373 54.6
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1360.1 1102 63.2
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1359.0 1358 57.1
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 1358.6 1423 55.0
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1358.6 1435 55.7
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1355.9 1379 54.9
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 1354.7 1378 54.9
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1354.3 1360 55.1
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 1352.4 1381 55.2
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 1352.0 1368 55.4
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1348.6 1391 53.8
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1347.8 1362 55.2
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1347.4 1379 53.6
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 1346.6 1373 54.6
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 1345.9 1371 55.2
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 1343.9 1382 54.1
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 1340.5 1355 56.5
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 1336.6 1389 54.4
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 1333.9 1364 55.4
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 1331.2 1384 54.0
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1322.8 1341 56.4
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 1321.6 1338 54.5
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1321.2 1348 54.2
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 1317.0 1390 52.2
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 1316.6 1354 56.0
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1315.8 1398 53.1
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1314.3 1383 55.0
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 1312.0 1324 55.1
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 1306.2 1354 53.3
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1305.8 748 89.3
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1305.4 1345 52.6
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 1301.6 1373 51.5
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 1300.8 1355 53.0
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1287.7 1170 57.4
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1287.7 1391 53.3
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 1287.3 1364 52.9
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1286.6 1341 53.4
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1286.2 1376 53.7
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1286.2 1336 53.4
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 1280.4 1364 53.7
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 1278.5 1432 52.0
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1270.8 1384 52.5
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1270.0 1377 52.3
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 1267.3 1359 52.2
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1267.3 1375 53.7
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1261.5 1468 51.8
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1261.1 1383 52.9
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1259.2 1346 52.5
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1258.0 1316 53.6
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 1254.2 1358 52.1
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1250.7 1078 60.1
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1248.8 1332 52.7
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1248.4 1421 50.6
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1245.0 1374 51.2
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1244.2 1379 51.1
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1241.5 1352 50.5
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1230.3 1147 55.9
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1215.3 1324 52.1
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1206.4 1113 57.1
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1205.3 1352 52.2
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1176.8 1372 50.8
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1142.5 956 59.4
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1130.9 1368 48.4
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1124.0 959 57.9
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1095.9 1105 56.3
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1090.9 1143 50.8
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 1.5e-309 1066.6 1483 45.1
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 2.0e-309 1066.2 894 62.2
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.1e-304 1050.4 1379 44.9
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 3.0e-302 1042.3 1337 43.5
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 3.4e-301 1038.9 1334 45.6
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 1.0e-297 1027.3 1098 53.8
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 2.3e-294 1016.1 1336 44.7
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 4.1e-291 1005.4 828 58.9
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 2.8e-271 939.5 895 58.8
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 4.9e-268 928.7 1355 43.8
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 6.7e-241 838.6 526 96.8
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 4.3e-232 809.3 667 65.4
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 2.0e-221 773.9 709 56.0
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 3.3e-179 633.6 600 53.7
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 3.0e-172 610.5 844 39.0
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.1e-142 512.3 450 56.4
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 2.0e-128 464.9 454 51.8
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 1.5e-120 438.7 562 50.0
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 4.1e-113 414.1 411 50.4
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 4.1e-105 387.5 620 51.1
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 7.0e-105 386.7 660 37.9
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.6e-96 359.0 1337 26.6
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 9.7e-91 339.7 214 71.5
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 7.2e-86 323.6 279 54.1
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 3.0e-76 291.6 247 59.1
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 2.7e-72 278.5 221 63.8
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 7.3e-70 270.4 264 49.2
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 3.1e-60 238.4 153 70.6
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.7e-58 232.6 215 50.7
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 7.8e-56 223.8 211 50.7
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 7.8e-56 223.8 365 42.7
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 7.3e-54 217.2 552 29.5
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.0e-52 211.5 178 56.7
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.1e-47 194.5 169 60.4
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.7e-40 172.2 177 47.5
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 1.8e-36 159.5 132 55.3
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 4.3e-30 138.3 122 51.6
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 9.6e-30 137.1 400 40.5
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 3.4e-27 128.6 201 34.3
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 4.2e-25 121.7 83 69.9
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.3e-21 110.2 63 84.1
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 3.7e-21 108.6 88 53.4
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.5e-19 101.7 61 75.4
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 3.8e-18 98.6 92 47.8
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 4.2e-17 95.1 92 47.8
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.1e-14 87.0 91 50.5
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.5e-14 86.7 53 69.8
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.8e-12 79.7 94 47.9
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.8e-12 79.7 99 38.4
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 1.2e-11 77.0 44 75.0
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 4.5e-11 75.1 175 30.9
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 6.5e-10 71.2 256 31.6
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 4.2e-09 68.6 85 43.5
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 2.1e-08 66.2 59 44.1
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 1.8e-07 63.2 57 52.6
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 5.1e-07 61.6 66 45.5
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.5e-06 60.1 118 28.8


User provided reference genes

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