Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 0.0e+00 1101.3 586 100.0
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 2.7e-48 197.6 658 34.2
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.0e-47 195.7 677 33.2
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 2.3e-47 194.5 710 29.0
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 2.3e-47 194.5 710 29.0
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 5.0e-47 193.4 740 30.3
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.3e-46 190.7 601 31.6
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.6e-45 188.3 746 31.1
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.1e-44 185.7 689 30.3
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.1e-44 185.7 693 32.6
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 3.1e-44 184.1 660 31.4
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 5.2e-44 183.3 587 30.7
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 5.2e-44 183.3 713 29.2
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 3.4e-43 180.6 644 31.1
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 4.4e-43 180.3 577 36.0
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 1.3e-42 178.7 733 30.2
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 1.3e-42 178.7 679 31.2
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.7e-42 177.2 730 28.5
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 4.9e-42 176.8 600 30.2
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.4e-41 175.3 621 34.1
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 5.4e-41 173.3 632 33.5
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.1e-41 172.9 592 32.1
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 7.1e-41 172.9 641 34.2
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.6e-40 171.8 166 66.9
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 4.6e-40 170.2 236 50.8
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 7.8e-40 169.5 633 33.2
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 7.8e-40 169.5 287 41.5
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 1.0e-39 169.1 715 29.8
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 5.1e-39 166.8 163 58.9
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.1e-38 165.6 591 30.6
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 1.1e-38 165.6 639 30.0
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 2.5e-38 164.5 166 53.0
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 4.3e-38 163.7 691 27.9
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.2e-37 162.2 691 31.4
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 2.8e-37 161.0 163 56.4
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 3.6e-37 160.6 683 28.6
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 4.7e-37 160.2 627 31.4
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 6.2e-37 159.8 453 33.8
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 6.2e-37 159.8 177 61.0
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 8.1e-37 159.5 166 62.7
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 1.1e-36 159.1 608 31.2
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 1.4e-36 158.7 163 55.8
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 2.4e-36 157.9 577 30.8
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 4.0e-36 157.1 592 29.1
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 6.8e-36 156.4 578 34.4
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.2e-35 155.6 187 51.3
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 2.0e-35 154.8 217 45.6
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 2.6e-35 154.5 642 31.8
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 2.6e-35 154.5 556 29.0
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 5.8e-35 153.3 176 50.6
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 7.6e-35 152.9 461 30.2
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.7e-34 151.8 724 29.8
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 2.2e-34 151.4 803 26.5
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.9e-34 151.0 731 26.9
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.1e-33 149.1 167 52.7
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.4e-33 148.7 586 28.2
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.9e-33 148.3 515 34.6
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 3.2e-33 147.5 673 28.7
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 3.2e-33 147.5 196 49.0
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 3.2e-33 147.5 217 51.6
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 9.2e-33 146.0 611 32.7
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 4.6e-32 143.7 481 29.3
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 4.6e-32 143.7 695 30.4
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 7.8e-32 142.9 759 27.3
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.7e-31 141.7 256 39.8
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.7e-31 141.7 637 27.9
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 2.3e-31 141.4 594 32.5
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 3.0e-31 141.0 168 51.8
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 3.0e-31 141.0 620 31.0
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 6.6e-31 139.8 625 30.4
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.1e-30 139.0 161 52.2
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.5e-30 138.7 174 53.4
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 5.6e-30 136.7 604 30.6
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 5.6e-30 136.7 682 31.1
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.2e-29 135.6 620 30.8
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 4.7e-29 133.7 161 59.6
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 6.2e-29 133.3 226 49.1
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 6.2e-29 133.3 173 45.1
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 8.1e-29 132.9 647 28.0
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 8.1e-29 132.9 620 30.8
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.1e-28 132.5 580 30.9
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.4e-28 132.1 717 27.5
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.1e-28 131.0 741 28.9
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 4.4e-27 127.1 694 29.7
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 9.9e-27 125.9 467 34.3
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 9.9e-27 125.9 129 55.0
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 2.2e-26 124.8 267 39.7
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 2.2e-26 124.8 622 29.4
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 4.9e-26 123.6 633 29.2
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 4.9e-26 123.6 627 30.3
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 4.9e-26 123.6 209 41.1
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 8.4e-26 122.9 627 30.3
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-25 122.5 170 48.2
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.9e-25 121.7 162 55.6
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.9e-25 121.7 627 30.8
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.2e-25 120.9 204 44.6
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 3.2e-25 120.9 575 25.2
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 7.1e-25 119.8 175 44.6
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 7.1e-25 119.8 619 28.4
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 6.0e-24 116.7 674 27.9
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 6.0e-24 116.7 150 48.7
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 7.8e-24 116.3 165 43.0
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.0e-23 115.9 168 53.0
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 3.0e-23 114.4 652 27.0
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 5.1e-23 113.6 219 42.0
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 6.6e-23 113.2 147 47.6
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 6.6e-23 113.2 585 29.6
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 2.5e-22 111.3 209 39.2
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 3.3e-22 110.9 613 28.4
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 9.6e-22 109.4 92 59.8
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 9.6e-22 109.4 130 60.8
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.6e-21 108.6 218 41.7
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 2.1e-21 108.2 639 24.4
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.8e-21 107.1 539 32.3
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 4.8e-21 107.1 540 26.5
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 8.1e-21 106.3 280 39.6
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 1.1e-20 105.9 142 44.4
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 4.0e-20 104.0 174 48.9
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 5.3e-20 103.6 92 60.9
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.2e-19 102.4 419 33.2
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.5e-19 102.1 129 53.5
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.5e-19 102.1 545 30.8
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.0e-19 101.7 460 27.4
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.3e-18 99.0 94 53.2
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.7e-18 98.6 86 60.5
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.2e-18 98.2 86 60.5
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 4.9e-18 97.1 538 31.4
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 4.9e-18 97.1 86 59.3
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 4.2e-17 94.0 631 26.6
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.2e-17 94.0 540 31.5
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.2e-16 92.4 156 40.4
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 1.6e-16 92.0 674 26.4
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 2.7e-16 91.3 157 49.0
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.8e-15 88.6 662 25.8
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 5.1e-15 87.0 64 68.8
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 5.6e-14 83.6 663 28.1
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 5.6e-14 83.6 666 26.1
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 3.1e-12 77.8 88 48.9
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 2.0e-11 75.1 670 26.0
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 2.4e-09 68.2 179 31.3
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 2.7e-08 64.7 480 24.4
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 3.5e-08 64.3 501 25.3
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 3.5e-08 64.3 585 24.1


User provided reference genes

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