Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000849 Vanilla planifolia HOM05D006758 ORTHO05D008326 1.7e-73 279.3 140 100.0
vmacro15829 Vaccinium macrocarpon HOM05D006758 ORTHO05D008326 1.3e-25 120.2 105 63.8
Haze_06744 Corylus avellana HOM05D006758 ORTHO05D008326 9.6e-21 104.0 124 52.4
QL05p074940 Quercus lobata HOM05D006758 ORTHO05D008326 9.6e-21 104.0 100 56.0
FAN25G0357 Fragaria x ananassa HOM05D006758 ORTHO05D008326 1.6e-20 103.2 109 58.7
QL93p0073_0472 Quercus lobata HOM05D006758 ORTHO05D008326 2.4e-19 99.4 111 54.1
Ah.14g088140 Amaranthus hybridus HOM05D000097 ORTHO05D000041 6.9e-19 97.8 94 60.6
SalBow1G3298 Salvia bowleyana HOM05D006758 ORTHO05D008326 1.3e-17 93.6 114 48.2
MBI02_g21861_MAGBIO Magnolia biondii HOM05D006758 ORTHO05D008326 4.9e-17 91.7 46 95.7
Manes.17G035700 Manihot esculenta HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
Nitab4.5_0002347g0160 Nicotiana tabacum HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
Nitab4.5_0008530g0010 Nicotiana tabacum HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
Potri.004G021200 Populus trichocarpa HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
Prupe.4G025700 Prunus persica HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
PGR004G2441 Punica granatum HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
arahy.Tifrunner.gnm1.ann1.GJ8XD1 Arachis hypogaea HOM05D006758 ORTHO05D008326 1.4e-16 90.1 45 95.6
CiPaw.09G087600 Carya illinoinensis HOM05D006758 ORTHO05D008326 1.4e-16 90.1 43 100.0
Dinv20021 Davidia involucrata HOM05D006758 ORTHO05D008326 1.4e-16 90.1 43 100.0
FAN21G3907 Fragaria x ananassa HOM05D006758 ORTHO05D008326 1.4e-16 90.1 100 53.0
Glyma.10G251800 Glycine max HOM05D006758 ORTHO05D008326 1.4e-16 90.1 43 100.0
Glyma.20G141700 Glycine max HOM05D006758 ORTHO05D008326 1.4e-16 90.1 43 100.0
Lsat_1_v5_gn_4_59120 Lactuca sativa HOM05D006758 ORTHO05D008326 1.4e-16 90.1 43 100.0
Lj5g0020351 Lotus japonicus HOM05D006758 ORTHO05D008326 1.4e-16 90.1 43 100.0
unitig_61.g26114 Utricularia gibba HOM05D006758 ORTHO05D008326 1.4e-16 90.1 43 100.0
ATR0661G232 Amborella trichopoda HOM05D006758 ORTHO05D008326 1.9e-16 89.7 43 97.7
CAN.G569.41 Capsicum annuum HOM05D006758 ORTHO05D008326 2.5e-16 89.4 44 95.5
MD05G1341600 Malus domestica HOM05D006758 ORTHO05D008326 2.5e-16 89.4 44 95.5
RcHm_v2.0_Chr5g0003931 Rosa chinensis HOM05D006758 ORTHO05D008326 2.5e-16 89.4 44 95.5
Sabra04G0011700 Salix brachista HOM05D006758 ORTHO05D008326 2.5e-16 89.4 44 95.5
Solyc02g080140.4 Solanum lycopersicum HOM05D006758 ORTHO05D008326 2.5e-16 89.4 44 95.5
Sopen02g024850 Solanum pennellii HOM05D006758 ORTHO05D008326 2.5e-16 89.4 44 95.5
arahy.Tifrunner.gnm1.ann1.ND4ZK6 Arachis hypogaea HOM05D006758 ORTHO05D008326 3.2e-16 89.0 43 97.7
Ca_10997_v3 Cicer arietinum L. HOM05D006758 ORTHO05D008326 3.2e-16 89.0 43 97.7
Eucgr.D01293 Eucalyptus grandis HOM05D006758 ORTHO05D008326 3.2e-16 89.0 43 97.7
PSO210G7269 Papaver somniferum HOM05D006758 ORTHO05D008326 3.2e-16 89.0 43 97.7
PSO832G0089 Papaver somniferum HOM05D006758 ORTHO05D008326 3.2e-16 89.0 43 97.7
Phvul.007G052700 Phaseolus vulgaris HOM05D006758 ORTHO05D008326 3.2e-16 89.0 43 97.7
TPR.G5478 Trifolium pratense HOM05D006758 ORTHO05D008326 3.2e-16 89.0 43 97.7
TAR624G0544 Trochodendron aralioides HOM05D006758 ORTHO05D008326 3.2e-16 89.0 43 97.7
GSVIVG01012634001 Vitis vinifera HOM05D006758 ORTHO05D008326 3.2e-16 89.0 43 97.7
CDE05G3555 Ceratophyllum demersum HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
Lalb_Chr06g0164881 Lupinus albus HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
Rhsim02G0111700 Rhododendron simsii HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
CANSAT56G2354 Cannabis sativa HOM05D006758 ORTHO05D008326 5.5e-16 88.2 44 93.2
Cc02_g11670 Coffea canephora HOM05D006758 ORTHO05D008326 5.5e-16 88.2 43 97.7
DCAR_004197 Daucus carota HOM05D006758 ORTHO05D008326 5.5e-16 88.2 44 93.2
Ciclev10017296m.g Citrus clementina HOM05D006758 ORTHO05D008326 7.1e-16 87.8 44 93.2
Hma1.2p1_2714F.1_g327410 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 7.1e-16 87.8 43 97.7
Hma1.2p1_2726F.1_g327620 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 7.1e-16 87.8 43 97.7
Pp3c2_14210 Physcomitrium patens HOM05D006758 ORTHO05D008326 7.1e-16 87.8 43 95.3
TAR626G1807 Trochodendron aralioides HOM05D006758 ORTHO05D008326 7.1e-16 87.8 43 95.3
DCAR_008127 Daucus carota HOM05D006758 ORTHO05D008326 9.3e-16 87.4 43 95.3
FvH4_3g02640 Fragaria vesca HOM05D006758 ORTHO05D008326 9.3e-16 87.4 44 93.2
MD10G1315000 Malus domestica HOM05D006758 ORTHO05D008326 1.2e-15 87.0 44 90.9
Mapoly0102s0010 Marchantia polymorpha HOM05D006758 ORTHO05D008326 1.2e-15 87.0 44 90.9
EL10Ac8g19995 Beta vulgaris HOM05D006758 ORTHO05D008326 1.6e-15 86.7 43 95.3
CSS0030244 Camellia sinensis var. sinensis HOM05D006758 ORTHO05D008326 1.6e-15 86.7 43 95.3
COL.COLO4_31733 Corchorus olitorius HOM05D006758 ORTHO05D008326 1.6e-15 86.7 43 95.3
Duzib235G1228 Durio zibethinus HOM05D006758 ORTHO05D008326 1.6e-15 86.7 43 95.3
ECA234G0861 Erigeron canadensis HOM05D006758 ORTHO05D008326 1.6e-15 86.7 43 95.3
Psat0s2691g0120 Pisum sativum HOM05D006758 ORTHO05D008326 1.6e-15 86.7 43 95.3
Sabra11G0016800 Salix brachista HOM05D006758 ORTHO05D008326 1.6e-15 86.7 44 90.9
Gohir.A06G207900 Gossypium hirsutum HOM05D006758 ORTHO05D008326 2.1e-15 86.3 43 93.0
Gorai.010G252900 Gossypium raimondii HOM05D006758 ORTHO05D008326 2.1e-15 86.3 43 93.0
Oeu037351.1 Olea europaea HOM05D006758 ORTHO05D008326 2.1e-15 86.3 43 95.3
THA.LOC104809516 Tarenaya hassleriana HOM05D006758 ORTHO05D008326 2.1e-15 86.3 43 95.3
MELO3C007373.2 Cucumis melo HOM05D006758 ORTHO05D008326 2.7e-15 85.9 44 93.2
CsaV3_6G049220 Cucumis sativus L. HOM05D006758 ORTHO05D008326 2.7e-15 85.9 44 93.2
Migut.M01286 Erythranthe guttata HOM05D006758 ORTHO05D008326 2.7e-15 85.9 43 93.0
HanXRQChr16g0515881 Helianthus annuus HOM05D006758 ORTHO05D008326 2.7e-15 85.9 43 95.3
SGA_v2.0_scaffold7G03879 Striga asiatica HOM05D006758 ORTHO05D008326 2.7e-15 85.9 43 93.0
Duzib192G0534 Durio zibethinus HOM05D006758 ORTHO05D008326 3.5e-15 85.5 43 93.0
Gohir.A09G069700 Gossypium hirsutum HOM05D006758 ORTHO05D008326 4.6e-15 85.1 44 90.9
Gohir.D09G069600 Gossypium hirsutum HOM05D006758 ORTHO05D008326 4.6e-15 85.1 44 90.9
Nn1g03624 Nelumbo nucifera HOM05D006758 ORTHO05D008326 6.0e-15 84.7 43 93.0
Hund23506 Selenicereus undatus HOM05D006758 ORTHO05D008326 7.9e-15 84.3 43 93.0
Thecc.06G214600 Theobroma cacao HOM05D006758 ORTHO05D008326 7.9e-15 84.3 43 90.7
Aa31LG1G3210 Aethionema arabicum HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
AL2G14330 Arabidopsis lyrata HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
AT1G61780 Arabidopsis thaliana HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
BcaB04g20373 Brassica carinata HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
BcaB07g31284 Brassica carinata HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
BcaC04g22349 Brassica carinata HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
Carub.0002s0329 Capsella rubella HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
CARHR050560 Cardamine hirsuta HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
Sp2g02770 Schrenkiella parvula HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 90.7
Sed0024295 Sechium edule HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 93.0
TWI38G0518 Tripterygium wilfordii HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 93.0
Thhalv10023778m.g Eutrema salsugineum HOM05D006758 ORTHO05D008326 1.3e-14 83.6 43 90.7
Ah.09g235270 Amaranthus hybridus HOM05D006758 ORTHO05D008326 1.8e-14 83.2 43 90.7
AagrBONN_evm.TU.Sc2ySwM_344.4905 Anthoceros agrestis HOM05D006758 ORTHO05D008326 1.8e-14 83.2 43 88.4
AUR62022003 Chenopodium quinoa HOM05D006758 ORTHO05D008326 3.0e-14 82.4 43 90.7
Os08g0190800 Oryza sativa ssp. japonica HOM05D006758 ORTHO05D008326 3.9e-14 82.0 43 90.7
Zm00001eb413280 Zea mays HOM05D006758 ORTHO05D008326 3.9e-14 82.0 43 90.7
Actinidia11840 Actinidia chinensis HOM05D006758 ORTHO05D008326 6.7e-14 81.3 43 93.0
Gohir.D06G213300 Gossypium hirsutum HOM05D006758 ORTHO05D008326 6.7e-14 81.3 40 92.5
PGSC0003DMG400002083 Solanum tuberosum HOM05D006758 ORTHO05D008326 1.6e-12 76.6 100 48.0
Atru.BG.309.p Acer truncatum HOM05D006758 ORTHO05D008326 2.1e-12 76.3 38 97.4
ClCG01G022160 Citrullus lanatus HOM05D006758 ORTHO05D008326 2.8e-12 75.9 48 83.3
SHI02162 Sapria himalayana HOM05D006758 ORTHO05D008326 2.8e-12 75.9 42 88.1
Dinv17829 Davidia involucrata HOM05D006758 ORTHO05D008326 1.1e-11 73.9 37 97.3
Oeu051222.1 Olea europaea HOM05D006758 ORTHO05D008326 4.1e-11 72.0 37 91.9
CBR_g45280 Chara braunii HOM05D006758 ORTHO05D008326 5.3e-11 71.6 39 82.1
Gorai.006G083800 Gossypium raimondii HOM05D006758 ORTHO05D008326 9.0e-11 70.9 38 89.5
Sc17g0007080 Simmondsia chinensis HOM05D006758 ORTHO05D008326 1.2e-10 70.5 37 91.9
SMO351G0293 Selaginella moellendorffii HOM05D006758 ORTHO05D008326 1.1e-08 63.9 36 80.6
Peaxi162Scf00082g10217 Petunia axillaris HOM05D006758 ORTHO05D008326 4.2e-08 62.0 28 100.0
MCO09G771 Micromonas commoda HOM05D006758 ORTHO05D008326 4.6e-07 58.5 44 61.4


User provided reference genes

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