Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 0.0e+00 1846.6 905 100.0
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 1.8e-152 544.3 913 37.8
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.0e-147 528.5 912 36.5
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 1.9e-130 471.1 968 34.9
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.3e-121 441.8 934 33.1
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 2.0e-119 434.5 970 34.4
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 3.0e-115 420.6 887 35.3
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 1.7e-110 404.8 783 35.2
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 6.5e-110 402.9 953 33.8
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 5.5e-109 399.8 978 33.0
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.6e-108 398.3 971 32.0
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 3.6e-108 397.1 924 33.8
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 1.8e-107 394.8 957 32.8
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.3e-107 394.4 835 35.9
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 2.3e-107 394.4 953 33.1
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 9.1e-104 382.5 946 32.2
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 5.9e-103 379.8 887 33.6
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 1.0e-102 379.0 966 32.5
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.3e-102 378.6 966 32.5
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.3e-102 378.6 949 32.1
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 5.0e-102 376.7 967 31.0
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 5.0e-102 376.7 965 32.5
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 8.5e-102 375.9 954 31.8
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.1e-101 375.6 954 32.3
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 1.1e-101 375.6 953 31.6
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.5e-101 374.4 963 32.4
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 3.6e-100 370.5 946 31.0
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 1.4e-99 368.6 931 32.3
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 8.8e-99 365.9 959 31.9
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 2.6e-98 364.4 955 31.8
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 2.6e-98 364.4 934 32.9
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 3.3e-98 364.0 938 30.6
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 5.7e-98 363.2 856 32.8
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 9.7e-98 362.5 945 32.3
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.3e-97 362.1 946 30.8
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.3e-97 362.1 945 32.3
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 4.8e-97 360.1 952 30.9
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 4.8e-97 360.1 946 32.3
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 8.2e-97 359.4 941 31.6
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 1.1e-96 359.0 947 32.1
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 2.0e-95 354.8 952 30.5
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 3.5e-95 354.0 952 31.3
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 7.7e-95 352.8 896 30.9
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.3e-94 352.1 980 32.0
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 2.5e-93 347.8 937 30.8
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 9.4e-93 345.9 932 30.9
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 2.1e-92 344.7 951 30.0
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 1.0e-91 342.4 948 32.0
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.4e-91 342.0 983 30.6
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 3.9e-91 340.5 949 31.9
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 3.3e-90 337.4 801 33.6
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 3.3e-90 337.4 861 31.9
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 7.4e-90 336.3 818 32.2
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 2.2e-89 334.7 906 32.1
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 3.7e-89 334.0 938 31.3
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 4.8e-89 333.6 821 32.3
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 6.3e-89 333.2 947 30.5
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 2.4e-88 331.3 980 29.9
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 2.6e-87 327.8 724 35.2
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 2.9e-86 324.3 978 30.1
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 4.7e-84 317.0 941 30.1
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 4.0e-83 313.9 953 28.9
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.6e-82 311.2 862 30.2
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 7.5e-82 309.7 923 29.6
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 9.8e-82 309.3 829 30.5
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 2.8e-81 307.8 942 28.3
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 6.3e-81 306.6 794 31.4
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 1.8e-80 305.1 932 30.6
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 5.4e-80 303.5 744 30.8
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.5e-79 300.8 967 29.2
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 2.2e-78 298.1 973 30.1
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 1.6e-76 292.0 407 42.5
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 2.1e-76 291.6 820 29.6
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 2.7e-76 291.2 786 30.3
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 3.6e-76 290.8 761 32.3
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 6.1e-76 290.0 843 28.8
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.4e-75 288.9 990 29.8
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 4.0e-75 287.3 989 28.9
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 4.1e-72 277.3 920 28.3
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.1e-72 277.3 752 30.6
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 5.4e-72 276.9 965 28.2
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.2e-71 275.8 962 28.6
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 2.0e-71 275.0 964 28.7
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 4.5e-71 273.9 914 28.7
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 5.0e-70 270.4 926 27.6
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 2.1e-68 265.0 888 27.7
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.8e-68 264.6 930 29.0
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 3.6e-68 264.2 894 28.0
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 4.7e-68 263.8 747 30.1
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 4.4e-66 257.3 654 31.7
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 4.4e-66 257.3 943 26.2
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 1.3e-65 255.8 923 27.7
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 3.2e-64 251.1 796 29.8
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 3.5e-63 247.7 880 28.1
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 7.8e-63 246.5 579 31.6
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.5e-61 242.3 751 28.8
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 4.3e-61 240.7 920 27.1
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 1.6e-60 238.8 875 27.8
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 4.7e-60 237.3 910 27.7
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.6e-58 231.5 605 31.9
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 5.8e-58 230.3 555 31.4
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.6e-55 222.2 611 30.4
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 3.0e-54 218.0 739 26.9
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-53 216.1 773 28.2
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 9.5e-53 213.0 501 31.5
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 4.9e-49 200.7 665 28.9
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.2e-48 198.0 371 35.8
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.6e-44 185.7 684 25.0
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 3.6e-44 184.5 359 35.1
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.6e-38 163.7 426 32.4
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 6.6e-38 163.7 448 32.1
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 1.5e-37 162.5 484 30.0
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 2.8e-36 158.3 577 26.9
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 3.6e-36 157.9 479 28.6
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 3.8e-33 147.9 535 28.2
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 3.9e-30 137.9 912 22.6
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.9e-29 135.6 925 24.1
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 8.1e-28 130.2 601 27.0
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 2.4e-27 128.6 687 25.2
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 9.9e-26 123.2 344 31.1
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 2.1e-23 115.5 521 25.0
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-21 109.8 456 29.4
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 1.9e-21 109.0 208 35.1
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 2.5e-21 108.6 611 22.1
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 1.4e-19 102.8 190 33.2
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 8.4e-17 93.6 287 32.1
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 3.0e-14 85.1 191 30.9
ATR0661G406 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.9e-14 84.7 219 31.1
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 5.1e-14 84.3 240 31.2
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.7e-14 84.0 216 33.8
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.5e-13 82.0 199 30.7
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 4.3e-13 81.3 324 26.9
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 8.1e-12 77.0 95 38.9
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 1.2e-10 73.2 211 28.0
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 1.5e-10 72.8 248 32.3
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.5e-10 71.2 338 26.6
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 5.8e-10 70.9 192 26.0
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 5.8e-10 70.9 192 26.0
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 9.3e-08 63.5 165 27.9
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.6e-07 62.8 165 27.9
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 1.3e-06 59.7 176 31.8


User provided reference genes

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