Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 8.8e-290 999.6 511 100.0
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.2e-163 579.7 512 57.4
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 1.6e-161 573.5 512 57.8
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 4.3e-159 565.5 512 56.1
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 6.2e-158 561.6 514 55.4
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 6.2e-158 561.6 511 55.8
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 4.0e-157 558.9 513 55.4
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 5.2e-157 558.5 512 55.1
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 5.8e-156 555.1 527 54.8
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 2.4e-154 549.7 512 53.9
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 9.2e-154 547.7 512 53.7
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 1.2e-153 547.4 513 53.4
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 2.7e-153 546.2 514 53.7
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 2.7e-153 546.2 516 53.7
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 4.6e-153 545.4 512 54.3
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 6.0e-153 545.0 512 54.3
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 1.3e-152 543.9 517 54.4
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 1.7e-152 543.5 516 53.5
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 3.0e-152 542.7 514 54.3
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 6.6e-152 541.6 514 52.7
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 1.5e-151 540.4 514 53.3
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 1.5e-151 540.4 514 53.3
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 2.5e-151 539.7 521 53.6
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 2.5e-151 539.7 516 54.5
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 3.3e-151 539.3 514 54.7
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 4.3e-151 538.9 515 54.0
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 1.6e-150 537.0 515 53.4
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 2.8e-150 536.2 516 52.3
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 4.7e-150 535.4 516 53.5
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 4.7e-150 535.4 516 52.7
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 6.2e-150 535.0 514 52.7
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 6.2e-150 535.0 553 50.5
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.1e-149 534.3 512 53.3
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 1.1e-149 534.3 512 52.7
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 1.1e-149 534.3 513 54.0
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 1.4e-149 533.9 515 54.2
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 1.8e-149 533.5 516 54.7
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 1.8e-149 533.5 537 52.5
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 2.3e-149 533.1 512 53.5
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 2.3e-149 533.1 516 53.3
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 2.3e-149 533.1 513 51.7
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 3.1e-149 532.7 513 53.2
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 8.9e-149 531.2 515 53.2
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 8.9e-149 531.2 518 54.1
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 1.2e-148 530.8 512 52.5
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 2.0e-148 530.0 512 53.7
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 2.6e-148 529.6 519 53.4
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 4.4e-148 528.9 513 50.9
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 7.5e-148 528.1 522 53.6
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 1.7e-147 526.9 513 53.6
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 1.7e-147 526.9 513 53.6
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 2.2e-147 526.6 511 51.7
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 4.9e-147 525.4 518 51.9
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 1.4e-146 523.9 517 53.0
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 1.4e-146 523.9 515 52.2
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 1.4e-146 523.9 512 52.9
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 1.9e-146 523.5 515 50.9
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 2.4e-146 523.1 513 53.2
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 4.1e-146 522.3 513 51.5
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 4.1e-146 522.3 550 49.3
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 1.2e-145 520.8 514 51.6
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 1.6e-145 520.4 517 52.2
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 2.1e-145 520.0 513 52.4
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 2.1e-145 520.0 515 52.4
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 2.7e-145 519.6 523 51.6
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 2.7e-145 519.6 514 51.9
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 3.5e-145 519.2 517 52.4
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 6.0e-145 518.5 515 52.4
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 6.0e-145 518.5 513 50.7
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 1.7e-144 516.9 499 53.7
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 1.7e-144 516.9 517 51.1
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 1.7e-144 516.9 514 52.7
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 3.9e-144 515.8 513 52.0
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 6.6e-144 515.0 516 51.2
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 7.3e-143 511.5 513 51.3
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 1.6e-142 510.4 507 51.1
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 3.6e-142 509.2 515 50.5
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.2e-140 504.2 543 50.1
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 7.6e-140 501.5 488 52.7
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 6.4e-139 498.4 484 53.5
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 4.6e-137 492.3 496 52.2
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 1.0e-136 491.1 586 47.4
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.9e-135 486.9 524 50.6
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 2.1e-134 483.4 555 46.8
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 2.4e-133 479.9 469 53.5
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 7.6e-132 474.9 513 50.9
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.3e-128 464.2 592 44.4
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 3.0e-128 463.0 462 52.8
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 6.6e-128 461.8 441 53.7
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 5.3e-125 452.2 464 50.9
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 3.8e-123 446.0 430 53.0
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 3.2e-122 443.0 541 44.9
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 4.2e-122 442.6 512 47.5
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 5.1e-120 435.6 459 51.2
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 1.1e-119 434.5 455 50.3
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 1.6e-118 430.6 545 46.1
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 2.4e-114 416.8 527 44.8
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 4.3e-111 406.0 528 44.5
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 6.3e-102 375.6 391 51.4
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 7.2e-98 362.1 529 41.2
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 8.7e-96 355.1 377 49.6
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 1.1e-90 338.2 382 49.0
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 8.2e-86 322.0 349 49.0
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 2.0e-84 317.4 381 48.0
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 3.4e-84 316.6 345 48.4
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 1.1e-79 301.6 451 41.0
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 4.4e-79 299.7 515 39.0
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 7.5e-71 272.3 460 38.3
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 2.7e-68 263.8 321 45.5
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 3.6e-65 253.4 195 66.2
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 1.8e-64 251.1 324 44.4
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 5.2e-64 249.6 240 53.3
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 3.7e-62 243.4 428 37.6
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 1.3e-54 218.4 542 30.6
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 2.4e-53 214.2 373 37.8
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 2.5e-50 204.1 356 37.6
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.8e-48 198.0 163 60.7
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 4.7e-41 173.3 135 60.7
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 8.9e-40 169.1 136 60.3
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.0e-35 154.1 124 59.7
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.0e-35 154.1 124 59.7
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 6.8e-24 116.3 505 25.7
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 5.8e-23 113.2 116 49.1
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 2.4e-21 107.8 192 35.9
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 2.1e-20 104.8 60 76.7
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 3.6e-17 94.0 53 73.6
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.4e-16 92.0 79 60.8
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 1.2e-15 89.0 52 71.2
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 9.9e-15 85.9 62 58.1
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 9.9e-15 85.9 62 58.1
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.2e-12 79.0 65 58.5
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 2.5e-10 71.2 223 30.0
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 3.6e-09 67.4 65 44.6
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 4.0e-08 63.9 75 48.0


User provided reference genes

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